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Expression Template: BP527516_at

Template Basic Information

Template name:	BP527516_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U449502
External db links:	GenBank: BP527516

Annotations for unigene SGN-U449502 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157329523\|emb\|CAO40492.1\|	667		86.55	1227 bp (65.6%)	2
Description:	unnamed
arabidopsis	blastx	At5G60990.1	608	4e-174	77.91	1227 bp (65.6%)	2
Description:	DEAD/DEAH box helicase, putative (RH10) \| chr5:24563827-24566374 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
BP527516_at_probe_01	PM	data not available	data not available	1
BP527516_at_probe_02	PM	data not available	data not available	1
BP527516_at_probe_03	PM	data not available	data not available	1
BP527516_at_probe_04	PM	data not available	data not available	1
BP527516_at_probe_05	PM	data not available	data not available	1
BP527516_at_probe_06	PM	data not available	data not available	1
BP527516_at_probe_07	PM	data not available	data not available	1
BP527516_at_probe_08	PM	data not available	data not available	1
BP527516_at_probe_09	PM	data not available	data not available	1
BP527516_at_probe_10	PM	data not available	data not available	1
BP527516_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	4.58	4.56	0.09	0.02
	TobEA vegetative shoot apex	shoot apex	8	8	4.25	4.39	0.59	0.14
	TobEA closed bud	flower bud	5	5	3.78	4.24	1.39	0.37
	TobEA open bud	flower bud	5	5	3.92	4.30	0.76	0.19
	TobEA cotyledons	cotyledon	5	5	4.34	4.14	0.77	0.18
	TobEA flower	flower	5	5	3.82	4.25	1.08	0.28
	TobEA lower stem	stem internode	5	5	4.96	5.09	0.31	0.06
	TobEA upper stem	stem internode	5	5	4.54	4.52	0.71	0.16
	TobEA cauline leaf	cauline leaf	5	5	4.35	4.45	0.40	0.09
	TobEA early senescent leaf	adult vascular leaf	5	5	4.03	4.38	0.89	0.22
	TobEA late senescent leaf	adult vascular leaf	5	5	4.02	3.60	1.39	0.35
	TobEA mature leaf	adult vascular leaf	5	5	4.35	4.73	1.23	0.28
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	3.97	4.56	2.32	0.58
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	3.83	4.63	1.27	0.33
	TobEA young leaf	juvenile vascular leaf	5	5	3.72	4.63	1.60	0.43
	TobEA mature root	root	5	5	2.42	3.25	1.65	0.68
	TobEA young root	root	6	6	4.68	4.39	0.62	0.13
	TobEA seed	seed	6	6	5.49	5.53	0.38	0.07
	TobEA young shoot	shoot system	5	5	4.32	4.62	1.35	0.31

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 145.CEL	4.6736484	0.334	A
	Atlas 143.CEL	4.675083	0.095	A
	Atlas 146.CEL	4.555368	0.334	A
	Atlas 147.CEL	4.5182257	0.081	A
	Atlas 144.CEL	4.4724097	0.081	A
TobEA vegetative shoot apex	Atlas 248.CEL	3.8061047	0.334	A
	Atlas 58.CEL	4.8828793	0.130	A
	Atlas 59.CEL	4.314772	0.150	A
	Atlas 61.CEL	4.5985265	0.038	P
	Atlas 246.CEL	3.154944	0.246	A
	Atlas 249.CEL	3.9155922	0.432	A
	Atlas 250.CEL	4.459866	0.095	A
	Atlas 247.CEL	4.878089	0.014	P
TobEA closed bud	Atlas 163.CEL	1.7422037	0.500	A
	Atlas 195.CEL	3.147487	0.466	A
	Atlas 161.CEL	4.243824	0.246	A
	Atlas 173.CEL	5.385361	0.081	A
	Atlas 199.CEL	4.3813086	0.068	A
TobEA open bud	Atlas 159.CEL	3.515116	0.334	A
	Atlas 167.CEL	2.7741532	0.274	A
	Atlas 169.CEL	4.3045225	0.112	A
	Atlas 171.CEL	4.4364123	0.274	A
	Atlas 244.CEL	4.583356	0.056	M
TobEA cotyledons	Atlas 71.CEL	3.2913256	0.432	A
	Atlas 69.CEL	4.0694323	0.304	A
	Atlas 70.CEL	5.133712	0.432	A
	Atlas 74.CEL	4.1373053	0.274	A
	Atlas 75.CEL	5.061837	0.219	A
TobEA flower	Atlas 165.CEL	1.9454669	0.334	A
	Atlas 197.CEL	4.2491765	0.246	A
	Atlas 158.CEL	4.3137336	0.130	A
	Atlas 166.CEL	4.6308866	0.150	A
	Atlas 198.CEL	3.9837875	0.399	A
TobEA lower stem	Atlas 164.CEL	4.607415	0.068	A
	Atlas 172.CEL	4.635529	0.246	A
	Atlas 174.CEL	5.086326	0.030	P
	Atlas 200.CEL	5.289525	0.150	A
	Atlas 245.CEL	5.1647716	0.081	A
TobEA upper stem	Atlas 168.CEL	5.032449	0.056	M
	Atlas 196.CEL	5.3393908	0.068	A
	Atlas 160.CEL	4.5249414	0.246	A
	Atlas 170.CEL	3.5001502	0.399	A
	Atlas 162.CEL	4.3198104	0.056	M
TobEA cauline leaf	Atlas 229.CEL	4.2631583	0.068	A
	Atlas 237.CEL	4.4497375	0.112	A
	Atlas 233.CEL	4.5100794	0.046	P
	Atlas 235.CEL	3.7361887	0.130	A
	Atlas 231.CEL	4.8059144	0.038	P
TobEA early senescent leaf	Atlas 175.CEL	4.834609	0.112	A
	Atlas 182.CEL	4.784389	0.002	P
	Atlas 183.CEL	3.2431157	0.805	A
	Atlas 187.CEL	4.376864	0.399	A
	Atlas 191.CEL	2.9128385	0.534	A
TobEA late senescent leaf	Atlas 178.CEL	3.5953426	0.046	P
	Atlas 179.CEL	2.4878156	0.666	A
	Atlas 186.CEL	6.179998	0.046	P
	Atlas 190.CEL	4.4208436	0.304	A
	Atlas 194.CEL	3.3928769	0.081	A
TobEA mature leaf	Atlas 94.CEL	4.7272453	0.011	P
	Atlas 95.CEL	5.3280296	0.019	P
	Atlas 96.CEL	2.2127447	0.334	A
	Atlas 93.CEL	4.919652	0.006	P
	Atlas 97.CEL	4.583497	0.038	P
TobEA mid/early senescent leaf	Atlas 176.CEL	4.563958	0.081	A
	Atlas 184.CEL	4.1076937	0.024	P
	Atlas 188.CEL	5.9577775	0.024	P
	Atlas 192.CEL	0.02032213	0.666	A
	Atlas 181.CEL	5.2069197	0.432	A
TobEA mid/late senescent leaf	Atlas 180.CEL	4.748532	0.366	A
	Atlas 185.CEL	3.3058016	0.634	A
	Atlas 189.CEL	1.8167126	0.905	A
	Atlas 193.CEL	4.6267385	0.003	P
	Atlas 177.CEL	4.631695	0.399	A
TobEA young leaf	Atlas 53.CEL	1.5841922	0.500	A
	Atlas 54.CEL	4.862698	0.068	A
	Atlas 55.CEL	2.4336042	0.500	A
	Atlas 56.CEL	5.087714	0.130	A
	Atlas 57.CEL	4.6323795	0.304	A
TobEA mature root	Atlas 64.CEL	4.075861	0.219	A
	Atlas 67.CEL		0.870	A
	Atlas 63.CEL	3.2819335	0.500	A
	Atlas 66.CEL	3.2516072	0.334	A
	Atlas 65.CEL	1.4718188	0.219	A
TobEA young root	Atlas 41.CEL	5.7805805	0.056	M
	Atlas 40.CEL	4.317659	0.081	A
	Atlas 43.CEL	4.429587	0.150	A
	Atlas 42.CEL	4.350606	0.038	P
	Atlas 44.CEL	4.1727333	0.068	A
	Atlas 39.CEL	5.055563	0.130	A
TobEA seed	Atlas 77.CEL	5.581059	0.081	A
	Atlas 98.CEL	5.480796	0.006	P
	Atlas 76.CEL	4.798303	0.095	A
	Atlas 79.CEL	5.6196437	0.046	P
	Atlas 99.CEL	5.972902	0.004	P
	Atlas 78.CEL	5.45979	0.038	P
TobEA young shoot	Atlas 87.CEL	5.2163234	0.274	A
	Atlas 88.CEL	4.2671356	0.366	A
	Atlas 86.CEL	2.06035	0.534	A
	Atlas 89.CEL	4.616985	0.334	A
	Atlas 90.CEL	5.440687	0.112	A

Correlation analysis (0)

No correlation analysis was found associated to this template

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