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Expression Template: BP192645_at

Template Basic Information

Template name:	BP192645_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U463718
External db links:	GenBank: BP192645

Annotations for unigene SGN-U463718 (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits (or none blast was used over this dataset)
arabidopsis	blastx	No significant hits (or none blast was used over this dataset)
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
BP192645_at_probe_01	PM	data not available	data not available	1
BP192645_at_probe_02	PM	data not available	data not available	1
BP192645_at_probe_03	PM	data not available	data not available	1
BP192645_at_probe_04	PM	data not available	data not available	1
BP192645_at_probe_05	PM	data not available	data not available	1
BP192645_at_probe_06	PM	data not available	data not available	1
BP192645_at_probe_07	PM	data not available	data not available	1
BP192645_at_probe_08	PM	data not available	data not available	1
BP192645_at_probe_09	PM	data not available	data not available	1
BP192645_at_probe_10	PM	data not available	data not available	1
BP192645_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	9.14	9.08	0.14	0.02
	TobEA vegetative shoot apex	shoot apex	8	8	8.52	8.85	1.11	0.13
	TobEA closed bud	flower bud	5	5	8.67	8.71	0.30	0.03
	TobEA open bud	flower bud	5	5	8.23	8.26	0.46	0.06
	TobEA cotyledons	cotyledon	5	5	8.10	8.13	0.23	0.03
	TobEA flower	flower	5	5	8.53	8.53	0.33	0.04
	TobEA lower stem	stem internode	5	5	8.22	7.98	0.79	0.10
	TobEA upper stem	stem internode	5	5	7.44	7.62	0.54	0.07
	TobEA cauline leaf	cauline leaf	5	5	7.70	7.62	0.50	0.07
	TobEA early senescent leaf	adult vascular leaf	5	5	8.22	8.48	1.01	0.12
	TobEA late senescent leaf	adult vascular leaf	5	5	8.36	8.47	0.36	0.04
	TobEA mature leaf	adult vascular leaf	5	5	8.65	8.56	0.46	0.05
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	8.24	8.20	0.73	0.09
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	7.85	7.73	0.65	0.08
	TobEA young leaf	juvenile vascular leaf	5	5	8.87	8.93	0.34	0.04
	TobEA mature root	root	5	5	9.06	9.12	0.24	0.03
	TobEA young root	root	6	6	8.38	8.53	0.73	0.09
	TobEA seed	seed	6	6	10.41	10.38	0.17	0.02
	TobEA young shoot	shoot system	5	5	8.44	8.57	0.35	0.04

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 143.CEL	9.029232	0.038	P
	Atlas 146.CEL	9.075178	0.024	P
	Atlas 147.CEL	9.244284	0.030	P
	Atlas 144.CEL	9.323923	0.024	P
	Atlas 145.CEL	9.006963	0.024	P
TobEA vegetative shoot apex	Atlas 249.CEL	9.560517	0.011	P
	Atlas 59.CEL	6.598256	0.046	P
	Atlas 247.CEL	9.388191	0.014	P
	Atlas 248.CEL	8.252695	0.030	P
	Atlas 61.CEL	8.415573	0.014	P
	Atlas 246.CEL	9.276738	0.019	P
	Atlas 250.CEL	9.390999	0.014	P
	Atlas 58.CEL	7.2455196	0.024	P
TobEA closed bud	Atlas 161.CEL	8.795875	0.024	P
	Atlas 173.CEL	8.191204	0.030	P
	Atlas 195.CEL	8.641712	0.014	P
	Atlas 199.CEL	8.989339	0.024	P
	Atlas 163.CEL	8.712055	0.024	P
TobEA open bud	Atlas 169.CEL	7.8349123	0.030	P
	Atlas 244.CEL	8.359685	0.024	P
	Atlas 159.CEL	7.7895875	0.038	P
	Atlas 167.CEL	8.911663	0.024	P
	Atlas 171.CEL	8.261232	0.014	P
TobEA cotyledons	Atlas 69.CEL	8.188468	0.046	P
	Atlas 74.CEL	8.12562	0.056	M
	Atlas 75.CEL	8.110707	0.068	A
	Atlas 70.CEL	7.7266107	0.024	P
	Atlas 71.CEL	8.360108	0.056	M
TobEA flower	Atlas 158.CEL	8.142301	0.024	P
	Atlas 165.CEL	8.531971	0.024	P
	Atlas 166.CEL	8.274573	0.014	P
	Atlas 198.CEL	8.915881	0.030	P
	Atlas 197.CEL	8.771349	0.019	P
TobEA lower stem	Atlas 172.CEL	7.508192	0.056	M
	Atlas 245.CEL	9.564423	0.019	P
	Atlas 164.CEL	7.9777274	0.024	P
	Atlas 174.CEL	7.857085	0.019	P
	Atlas 200.CEL	8.189668	0.014	P
TobEA upper stem	Atlas 162.CEL	6.655029	0.038	P
	Atlas 168.CEL	7.820728	0.068	A
	Atlas 196.CEL	7.9672985	0.030	P
	Atlas 160.CEL	7.616033	0.056	M
	Atlas 170.CEL	7.14474	0.081	A
TobEA cauline leaf	Atlas 233.CEL	8.359988	0.024	P
	Atlas 231.CEL	7.435963	0.019	P
	Atlas 229.CEL	8.018372	0.019	P
	Atlas 235.CEL	7.620624	0.014	P
	Atlas 237.CEL	7.0648003	0.030	P
TobEA early senescent leaf	Atlas 182.CEL	7.65287	0.068	A
	Atlas 183.CEL	8.479401	0.068	A
	Atlas 175.CEL	6.814653	0.038	P
	Atlas 187.CEL	8.737828	0.030	P
	Atlas 191.CEL	9.4272995	0.014	P
TobEA late senescent leaf	Atlas 178.CEL	8.11556	0.014	P
	Atlas 179.CEL	8.467155	0.038	P
	Atlas 186.CEL	7.8780823	0.056	M
	Atlas 190.CEL	8.763209	0.014	P
	Atlas 194.CEL	8.55757	0.038	P
TobEA mature leaf	Atlas 95.CEL	8.557754	0.024	P
	Atlas 93.CEL	8.594508	0.019	P
	Atlas 94.CEL	8.549751	0.024	P
	Atlas 96.CEL	8.136566	0.024	P
	Atlas 97.CEL	9.397542	0.030	P
TobEA mid/early senescent leaf	Atlas 181.CEL	7.9025416	0.056	M
	Atlas 188.CEL	8.794713	0.019	P
	Atlas 176.CEL	8.2008	0.068	A
	Atlas 184.CEL	7.2367835	0.014	P
	Atlas 192.CEL	9.08076	0.030	P
TobEA mid/late senescent leaf	Atlas 177.CEL	7.001352	0.081	A
	Atlas 185.CEL	8.31504	0.068	A
	Atlas 180.CEL	7.546173	0.030	P
	Atlas 189.CEL	8.646529	0.046	P
	Atlas 193.CEL	7.7290425	0.046	P
TobEA young leaf	Atlas 55.CEL	9.115833	0.024	P
	Atlas 53.CEL	8.894418	0.019	P
	Atlas 56.CEL	8.930557	0.030	P
	Atlas 57.CEL	9.114674	0.014	P
	Atlas 54.CEL	8.285806	0.056	M
TobEA mature root	Atlas 64.CEL	8.819729	0.030	P
	Atlas 63.CEL	9.216818	0.024	P
	Atlas 65.CEL	9.327019	0.014	P
	Atlas 66.CEL	9.121598	0.030	P
	Atlas 67.CEL	8.803153	0.030	P
TobEA young root	Atlas 43.CEL	7.204248	0.056	M
	Atlas 44.CEL	8.68685	0.024	P
	Atlas 39.CEL	7.9830804	0.081	A
	Atlas 40.CEL	8.396732	0.024	P
	Atlas 41.CEL	9.349385	0.030	P
	Atlas 42.CEL	8.668929	0.011	P
TobEA seed	Atlas 99.CEL	10.640511	0.024	P
	Atlas 78.CEL	10.577563	0.019	P
	Atlas 79.CEL	10.236439	0.014	P
	Atlas 76.CEL	10.382809	0.019	P
	Atlas 98.CEL	10.220068	0.038	P
	Atlas 77.CEL	10.385519	0.030	P
TobEA young shoot	Atlas 88.CEL	8.566372	0.038	P
	Atlas 86.CEL	7.8846154	0.024	P
	Atlas 89.CEL	8.3375225	0.046	P
	Atlas 87.CEL	8.605218	0.068	A
	Atlas 90.CEL	8.8016815	0.019	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (9 templates correlated)

Template	Pearson	Internal Mapping
AJ717999_s_at	0.8440298	SGN-U444480
BP532537_at	0.841076	SGN-U461396
GC207_at	0.826466	No available
DV159907_at	0.8146443	SGN-U461378
BP132883_at	0.8064722	SGN-U459758
EB444888_at	0.8053719	SGN-U457905
TT04_O04_at	0.8039315	SGN-U459712
EB682856_at	0.801816	SGN-U456759
DV159657_s_at	0.8007963	SGN-U449273

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