Sol Genomics Network

clone(s) in cart (order)

Old browser version detected

This site is optimized for modern web browsers

Please upgrade your browser

Sorry!, some features may not work in outdated browsers

Sol Genomics Network

Search
- Organisms
- Loci & Genes
- Genome features
- Expression
- Accessions and Plots
- QTLs
- Markers
- BACs
- Unigenes
- ESTs and libraries
- Gene Families
- Insitu database
- Images
- People
- FAQ
Maps
- All Maps
- The New Comparative Viewer
- Comparative Viewer
- Submit a map
- Tomato
- Tomato-EXPEN 2000
- Tomato-Kazusa/SolCAP
- Tomato QTLs
- Tomato physical map
- Tomato FPC contig map
- Tomato IL map
- Tomato FISH map
- Tomato AGP map
- Pepper
- Pepper COSII map
- Pepper-AC99
- Pepper-FA03
- Eggplant
- Eggplant COSII map
- Eggplant-LXM 2002
- More Maps
- Potato-TXB 1992
- Tobacco SSR 2007
- Arabidopsis COSII
Genomes
- Sequenced Accessions
- Completed Genomes
- Tomato
- Potato
- Pepper
- Eggplant
- Solanum pennellii
- Solanum lycopersicoides
- Solanum pimpinellifolium
- Solanum lycopersicum var. cerasiforme
- Iochroma cyaneum
- Draft Genomes
- Nicotiana attenuata
- Nicotiana benthamiana
- Nicotiana tabacum
- Petunia axillaris
- Petunia inflata
- Solanum chilense
- Coffea humblotiana
- Resequencing projects
- Solanum lycopersicum inbreds
- 150 Tomato Genome Resequencing Project
- BGI Tomato 360 genomes
- Varitome Project
Projects
Tools
- Sequence Analysis
- BLAST
- VIGS Tool
- Alignment Analyzer
- Tree Browser
- Motif Finder
- Mapping
- Genome Browser (Jbrowse)
- SolBrowse Comparative genome viewer
- Comparative Map Viewer
- CAPS Designer
- solQTL: QTL Mapping
- Molecular Biology
- In Silico PCR
- Tomato Expression Atlas (TEA)
- Tomato Expression Database (TED)
- Systems Biology
- SolCyc Biochemical Pathways
- Coffee Interactomic Data
- SGN Ontology Browser
- Breeder Tools
- Breeders Toolbox
- Bulk Query
- FTP Site
- Download Genome Sequences
- Download Gene Sequences
- Clones, Arrays, Unigenes and BACs
- Unigene Converter
About
- About
- Contact
- Cite SGN
- Links
- Help
- FAQ
- Become SGN Editor
- Forum
- FTP data
- SlideShare
- Twitter
- Facebook

Advanced

This site uses cookies to provide logins and other features. Please accept the use of cookies by clicking Accept.

Expression Template: BP192634_at

Template Basic Information

Template name:	BP192634_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U425379
External db links:	GenBank: BP192634

Annotations for unigene SGN-U425379 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157350051\|emb\|CAO39989.1\|	243	2e-62	55.14	834 bp (88.3%)	3
Description:	unnamed
arabidopsis	blastx	At1G02890.1	165	4e-41	40.26	834 bp (88.3%)	3
Description:	AAA-type ATPase family protein \| chr1:645372-651797 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
BP192634_at_probe_01	PM	data not available	data not available	1
BP192634_at_probe_02	PM	data not available	data not available	1
BP192634_at_probe_03	PM	data not available	data not available	1
BP192634_at_probe_04	PM	data not available	data not available	1
BP192634_at_probe_05	PM	data not available	data not available	1
BP192634_at_probe_06	PM	data not available	data not available	1
BP192634_at_probe_07	PM	data not available	data not available	1
BP192634_at_probe_08	PM	data not available	data not available	1
BP192634_at_probe_09	PM	data not available	data not available	1
BP192634_at_probe_10	PM	data not available	data not available	1
BP192634_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	8.17	8.19	0.14	0.02
	TobEA vegetative shoot apex	shoot apex	8	8	7.20	7.57	1.11	0.15
	TobEA closed bud	flower bud	5	5	8.25	8.30	0.23	0.03
	TobEA open bud	flower bud	5	5	7.81	7.86	0.21	0.03
	TobEA cotyledons	cotyledon	5	5	6.95	6.91	0.30	0.04
	TobEA flower	flower	5	5	8.01	7.98	0.25	0.03
	TobEA lower stem	stem internode	5	5	7.53	7.60	0.14	0.02
	TobEA upper stem	stem internode	5	5	7.63	7.50	0.27	0.04
	TobEA cauline leaf	cauline leaf	5	5	7.47	7.57	0.28	0.04
	TobEA early senescent leaf	adult vascular leaf	5	5	6.87	7.29	0.65	0.09
	TobEA late senescent leaf	adult vascular leaf	5	5	7.24	7.55	0.77	0.11
	TobEA mature leaf	adult vascular leaf	5	5	7.28	7.06	0.35	0.05
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	6.32	6.38	1.09	0.17
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	7.27	7.33	0.72	0.10
	TobEA young leaf	juvenile vascular leaf	5	5	7.17	7.74	1.42	0.20
	TobEA mature root	root	5	5	7.41	7.43	0.13	0.02
	TobEA young root	root	6	6	6.31	6.17	0.43	0.07
	TobEA seed	seed	6	6	7.18	7.06	0.31	0.04
	TobEA young shoot	shoot system	5	5	7.21	7.54	0.56	0.08

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 143.CEL	8.015113	0.004	P
	Atlas 144.CEL	8.037865	7e-4	P
	Atlas 145.CEL	8.262682	0.002	P
	Atlas 147.CEL	8.337396	0.002	P
	Atlas 146.CEL	8.186816	0.001	P
TobEA vegetative shoot apex	Atlas 246.CEL	8.190385	2e-4	P
	Atlas 247.CEL	7.9142227	7e-4	P
	Atlas 249.CEL	8.06922	0.001	P
	Atlas 61.CEL	7.2324286	0.004	P
	Atlas 248.CEL	6.361032	0.014	P
	Atlas 250.CEL	8.0622225	0.001	P
	Atlas 58.CEL	6.7551193	0.046	P
	Atlas 59.CEL	5.014134	0.171	A
TobEA closed bud	Atlas 199.CEL	7.987337	0.002	P
	Atlas 163.CEL	8.480802	7e-4	P
	Atlas 161.CEL	8.440988	0.001	P
	Atlas 173.CEL	8.029964	0.004	P
	Atlas 195.CEL	8.300287	0.002	P
TobEA open bud	Atlas 159.CEL	7.474269	2e-4	P
	Atlas 171.CEL	8.051344	0.019	P
	Atlas 244.CEL	7.792703	0.001	P
	Atlas 169.CEL	7.893252	7e-4	P
	Atlas 167.CEL	7.8606143	7e-4	P
TobEA cotyledons	Atlas 69.CEL	6.905092	0.081	A
	Atlas 70.CEL	7.0240116	0.068	A
	Atlas 74.CEL	6.6820307	0.095	A
	Atlas 75.CEL	6.701912	0.150	A
	Atlas 71.CEL	7.4174104	0.024	P
TobEA flower	Atlas 165.CEL	7.984926	7e-4	P
	Atlas 198.CEL	8.166877	0.002	P
	Atlas 166.CEL	7.6233087	7e-4	P
	Atlas 158.CEL	7.973897	7e-4	P
	Atlas 197.CEL	8.288991	7e-4	P
TobEA lower stem	Atlas 164.CEL	7.4277773	0.001	P
	Atlas 172.CEL	7.341414	0.003	P
	Atlas 174.CEL	7.6205225	0.006	P
	Atlas 200.CEL	7.6638484	0.003	P
	Atlas 245.CEL	7.596169	0.002	P
TobEA upper stem	Atlas 162.CEL	7.4898148	0.006	P
	Atlas 160.CEL	7.997347	0.003	P
	Atlas 196.CEL	7.8184023	0.003	P
	Atlas 168.CEL	7.4964156	0.004	P
	Atlas 170.CEL	7.32612	0.001	P
TobEA cauline leaf	Atlas 235.CEL	7.7295547	0.002	P
	Atlas 229.CEL	7.2603936	0.006	P
	Atlas 231.CEL	7.5697174	0.002	P
	Atlas 233.CEL	7.711349	0.004	P
	Atlas 237.CEL	7.0993786	0.011	P
TobEA early senescent leaf	Atlas 183.CEL	7.391577	0.095	A
	Atlas 187.CEL	7.287904	0.002	P
	Atlas 175.CEL	6.1906285	0.068	A
	Atlas 182.CEL	6.1369085	0.081	A
	Atlas 191.CEL	7.3459477	0.019	P
TobEA late senescent leaf	Atlas 186.CEL	7.550293	0.046	P
	Atlas 178.CEL	7.648542	0.008	P
	Atlas 190.CEL	6.8759956	0.056	M
	Atlas 179.CEL	6.0844407	0.112	A
	Atlas 194.CEL	8.029373	0.002	P
TobEA mature leaf	Atlas 94.CEL	7.056881	0.011	P
	Atlas 95.CEL	7.622958	0.019	P
	Atlas 97.CEL	7.0247955	0.004	P
	Atlas 93.CEL	6.9959073	0.002	P
	Atlas 96.CEL	7.710675	0.003	P
TobEA mid/early senescent leaf	Atlas 184.CEL	4.7926536	0.095	A
	Atlas 181.CEL	7.858249	0.003	P
	Atlas 192.CEL	6.09962	0.056	M
	Atlas 176.CEL	6.3791633	0.024	P
	Atlas 188.CEL	6.493251	0.046	P
TobEA mid/late senescent leaf	Atlas 193.CEL	7.471744	0.004	P
	Atlas 180.CEL	7.005108	0.112	A
	Atlas 189.CEL	8.24423	0.008	P
	Atlas 177.CEL	6.272675	0.046	P
	Atlas 185.CEL	7.333912	0.011	P
TobEA young leaf	Atlas 55.CEL	7.736793	0.008	P
	Atlas 57.CEL	7.985756	0.001	P
	Atlas 54.CEL	4.639559	0.399	A
	Atlas 53.CEL	7.618486	0.001	P
	Atlas 56.CEL	7.8853674	0.004	P
TobEA mature root	Atlas 65.CEL	7.56128	0.003	P
	Atlas 63.CEL	7.4283295	0.002	P
	Atlas 64.CEL	7.356872	0.008	P
	Atlas 66.CEL	7.231713	0.001	P
	Atlas 67.CEL	7.49615	0.006	P
TobEA young root	Atlas 40.CEL	6.8708644	0.014	P
	Atlas 44.CEL	6.792681	0.011	P
	Atlas 42.CEL	6.2154336	0.046	P
	Atlas 39.CEL	5.837804	0.095	A
	Atlas 41.CEL	6.0117803	0.046	P
	Atlas 43.CEL	6.1182966	0.095	A
TobEA seed	Atlas 77.CEL	6.9114876	0.002	P
	Atlas 78.CEL	7.783272	0.002	P
	Atlas 76.CEL	7.0604177	0.019	P
	Atlas 79.CEL	7.058081	0.019	P
	Atlas 98.CEL	7.208515	2e-4	P
	Atlas 99.CEL	7.0487094	0.011	P
TobEA young shoot	Atlas 87.CEL	7.6895466	0.006	P
	Atlas 88.CEL	7.6207404	0.019	P
	Atlas 89.CEL	6.6231875	0.068	A
	Atlas 90.CEL	6.5621533	0.150	A
	Atlas 86.CEL	7.5382295	0.008	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (7 templates correlated)

Template	Pearson	Internal Mapping
BP133858_at	0.843015	SGN-U450746
EB427758_at	0.8406639	SGN-U430385
EB440385_at	0.8264916	SGN-U424382
AJ718050_at	0.8173663	SGN-U495932
EB424907_at	0.8170255	SGN-U446756
EB683816_at	0.81502	SGN-U440856
CTGG200_at	0.8131586	No available

Your Lists

Public Lists

List Contents

List Validation Report: Failed

Elements not found:

Optional: Add Missing Accessions to A List

Mismatched case

Click the Adjust Case button to align the case in the list with what is in the database.

Multiple mismatched case

Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.

List elements matching a synonym

Multiple synonym matches

Multiple synonym matches have to be resolved manually. Contact database administrators if necessary.

Fuzzy Search Results

Synonym Search Results

Create a New List from Unique Names:

Available Seedlots

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Create a New List from Selected Seedlots:

Manage Seedlots

Your Datasets

Public Datasets

Dataset Contents

Dataset Validation Failed

Elements not found:

Your Calendar

Having trouble viewing events on the calendar?
Are you associated with the breeding program you are interested in viewing?

Calendar Permissions

Add New Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

http://www.

Event Info

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

Edit Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

Login

Show Password

Forgot Username

If you've forgotten your username, enter your email address below. An email will be sent with any account username(s) associated with your email address.

Email Address

Reset Password

To reset your password, please enter your email address. A link will be sent to that address with a link that will enable you to reset your password.

Email Address

Create New User

Notice

Before creating a new account, please check if you already have an account using the directory search.
A link will be emailed to you. Please click on it to activate the account.
All fields are required.

First Name:

Last Name:

Organization:

Username:

Username must be at least 7 characters long.

Password:

Password must be at least 7 characters long and different from your username.

Confirm Password:

Password must be at least 7 characters long and different from your username.

Email Address:

An email will be sent to this address requiring you to confirm its receipt to activate your account.