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Expression Template: BP137128_at

Template Basic Information

Template name:	BP137128_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U466055
External db links:	GenBank: BP137128

Annotations for unigene SGN-U466055 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|125587922\|gb\|EAZ28586.1\|	206	1e-51	65.69	411 bp (62.5%)	3
Description:	hypothetical protein OsJ_12572 [Oryza sativa Japonica Group]
arabidopsis	blastx	At4G16440.1	202	1e-73	67.88	411 bp (62.5%)	3
Description:	iron hydrogenase family protein \| chr4:9269286-9271532 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
BP137128_at_probe_01	PM	data not available	data not available	1
BP137128_at_probe_02	PM	data not available	data not available	1
BP137128_at_probe_03	PM	data not available	data not available	1
BP137128_at_probe_04	PM	data not available	data not available	1
BP137128_at_probe_05	PM	data not available	data not available	1
BP137128_at_probe_06	PM	data not available	data not available	1
BP137128_at_probe_07	PM	data not available	data not available	1
BP137128_at_probe_08	PM	data not available	data not available	1
BP137128_at_probe_09	PM	data not available	data not available	1
BP137128_at_probe_10	PM	data not available	data not available	1
BP137128_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	7.76	7.76	0.12	0.02
	TobEA vegetative shoot apex	shoot apex	8	8	7.57	7.53	0.27	0.04
	TobEA closed bud	flower bud	5	5	7.73	7.67	0.17	0.02
	TobEA open bud	flower bud	5	5	7.43	7.52	0.23	0.03
	TobEA cotyledons	cotyledon	5	5	7.14	7.17	0.19	0.03
	TobEA flower	flower	5	5	7.90	7.92	0.06	0.01
	TobEA lower stem	stem internode	5	5	8.24	8.20	0.17	0.02
	TobEA upper stem	stem internode	5	5	7.65	7.72	0.15	0.02
	TobEA cauline leaf	cauline leaf	5	5	7.84	7.79	0.23	0.03
	TobEA early senescent leaf	adult vascular leaf	5	5	8.46	8.49	0.34	0.04
	TobEA late senescent leaf	adult vascular leaf	5	5	8.73	8.68	0.35	0.04
	TobEA mature leaf	adult vascular leaf	5	5	8.36	8.43	0.18	0.02
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	8.52	8.43	0.19	0.02
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	8.69	8.75	0.31	0.04
	TobEA young leaf	juvenile vascular leaf	5	5	7.50	7.57	0.21	0.03
	TobEA mature root	root	5	5	8.13	8.02	0.25	0.03
	TobEA young root	root	6	6	7.30	7.11	0.49	0.07
	TobEA seed	seed	6	6	8.43	8.44	0.13	0.01
	TobEA young shoot	shoot system	5	5	7.47	7.39	0.18	0.02

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 144.CEL	7.8050356	7e-4	P
	Atlas 143.CEL	7.761857	7e-4	P
	Atlas 146.CEL	7.9227552	2e-4	P
	Atlas 147.CEL	7.705466	7e-4	P
	Atlas 145.CEL	7.6038165	0.002	P
TobEA vegetative shoot apex	Atlas 247.CEL	7.535156	2e-4	P
	Atlas 250.CEL	7.8093944	2e-4	P
	Atlas 59.CEL	7.383988	2e-4	P
	Atlas 246.CEL	7.855587	2e-4	P
	Atlas 248.CEL	7.520518	2e-4	P
	Atlas 249.CEL	7.8893456	7e-4	P
	Atlas 58.CEL	7.088468	2e-4	P
	Atlas 61.CEL	7.4858565	2e-4	P
TobEA closed bud	Atlas 195.CEL	7.6691537	0.002	P
	Atlas 199.CEL	7.6431117	2e-4	P
	Atlas 161.CEL	7.9835076	2e-4	P
	Atlas 163.CEL	7.5508437	2e-4	P
	Atlas 173.CEL	7.7854786	7e-4	P
TobEA open bud	Atlas 244.CEL	7.0521646	2e-4	P
	Atlas 171.CEL	7.528208	7e-4	P
	Atlas 159.CEL	7.4238243	0.001	P
	Atlas 167.CEL	7.519369	2e-4	P
	Atlas 169.CEL	7.6416755	2e-4	P
TobEA cotyledons	Atlas 69.CEL	7.315218	0.002	P
	Atlas 70.CEL	7.1642222	0.046	P
	Atlas 75.CEL	7.168274	0.006	P
	Atlas 74.CEL	7.224683	0.006	P
	Atlas 71.CEL	6.8247848	0.004	P
TobEA flower	Atlas 197.CEL	7.8088765	2e-4	P
	Atlas 198.CEL	7.8739986	7e-4	P
	Atlas 158.CEL	7.93341	2e-4	P
	Atlas 165.CEL	7.9202805	2e-4	P
	Atlas 166.CEL	7.9478846	7e-4	P
TobEA lower stem	Atlas 245.CEL	8.154158	7e-4	P
	Atlas 174.CEL	8.055087	2e-4	P
	Atlas 200.CEL	8.516809	7e-4	P
	Atlas 164.CEL	8.276837	2e-4	P
	Atlas 172.CEL	8.202566	2e-4	P
TobEA upper stem	Atlas 196.CEL	7.534648	7e-4	P
	Atlas 162.CEL	7.454387	2e-4	P
	Atlas 160.CEL	7.728473	2e-4	P
	Atlas 168.CEL	7.8076816	7e-4	P
	Atlas 170.CEL	7.7229567	2e-4	P
TobEA cauline leaf	Atlas 231.CEL	7.5656	0.001	P
	Atlas 233.CEL	8.068367	7e-4	P
	Atlas 237.CEL	7.788511	7e-4	P
	Atlas 229.CEL	8.095179	7e-4	P
	Atlas 235.CEL	7.6985793	7e-4	P
TobEA early senescent leaf	Atlas 191.CEL	8.621264	2e-4	P
	Atlas 175.CEL	8.117754	2e-4	P
	Atlas 182.CEL	8.493822	7e-4	P
	Atlas 183.CEL	8.135855	2e-4	P
	Atlas 187.CEL	8.933548	7e-4	P
TobEA late senescent leaf	Atlas 194.CEL	8.682426	2e-4	P
	Atlas 178.CEL	8.769277	2e-4	P
	Atlas 179.CEL	8.677265	2e-4	P
	Atlas 186.CEL	8.264235	2e-4	P
	Atlas 190.CEL	9.243827	7e-4	P
TobEA mature leaf	Atlas 95.CEL	8.191557	2e-4	P
	Atlas 96.CEL	8.154147	2e-4	P
	Atlas 97.CEL	8.503113	2e-4	P
	Atlas 94.CEL	8.434008	7e-4	P
	Atlas 93.CEL	8.533764	2e-4	P
TobEA mid/early senescent leaf	Atlas 181.CEL	8.838159	7e-4	P
	Atlas 176.CEL	8.399501	7e-4	P
	Atlas 184.CEL	8.400116	7e-4	P
	Atlas 188.CEL	8.533556	7e-4	P
	Atlas 192.CEL	8.429524	7e-4	P
TobEA mid/late senescent leaf	Atlas 177.CEL	8.169367	0.001	P
	Atlas 185.CEL	8.729169	0.001	P
	Atlas 193.CEL	8.78403	0.001	P
	Atlas 180.CEL	8.747103	7e-4	P
	Atlas 189.CEL	8.99629	0.001	P
TobEA young leaf	Atlas 53.CEL	7.39058	7e-4	P
	Atlas 54.CEL	7.7493114	7e-4	P
	Atlas 56.CEL	7.5734377	0.002	P
	Atlas 55.CEL	7.1941333	2e-4	P
	Atlas 57.CEL	7.57518	7e-4	P
TobEA mature root	Atlas 65.CEL	8.284951	7e-4	P
	Atlas 63.CEL	7.882154	2e-4	P
	Atlas 64.CEL	8.484073	0.001	P
	Atlas 67.CEL	8.023494	2e-4	P
	Atlas 66.CEL	7.983388	7e-4	P
TobEA young root	Atlas 42.CEL	6.844756	7e-4	P
	Atlas 40.CEL	6.932532	2e-4	P
	Atlas 41.CEL	8.013642	0.001	P
	Atlas 44.CEL	7.092198	7e-4	P
	Atlas 39.CEL	7.8129826	0.001	P
	Atlas 43.CEL	7.1299767	0.001	P
TobEA seed	Atlas 76.CEL	8.307852	2e-4	P
	Atlas 79.CEL	8.630757	2e-4	P
	Atlas 78.CEL	8.290548	2e-4	P
	Atlas 98.CEL	8.410447	2e-4	P
	Atlas 77.CEL	8.474915	7e-4	P
	Atlas 99.CEL	8.466397	2e-4	P
TobEA young shoot	Atlas 86.CEL	7.3698707	2e-4	P
	Atlas 89.CEL	7.7624254	0.002	P
	Atlas 88.CEL	7.311428	0.004	P
	Atlas 87.CEL	7.5123067	7e-4	P
	Atlas 90.CEL	7.3935323	0.004	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (22 templates correlated)

Template	Pearson	Internal Mapping
EB444116_at	0.8536749	SGN-U448151
CV020141_s_at	0.8514685	SGN-U441575
C187_at	0.8342758	SGN-U438575
EB447061_at	0.8330611	SGN-U451291
C8915_at	0.8309508	SGN-U450146
C1066_x_at	0.8295958	SGN-U431787
C8761_s_at	0.8267	SGN-U423114
DV158493_at	0.8266897	SGN-U422488
TT23_D20_at	0.8209213	SGN-U432888
C2856_at	0.8158338	SGN-U439421
DW001942_at	0.8143173	SGN-U459921
EB447894_at	0.8102657	SGN-U435762
C10633_at	0.8085399	No available
TT04_L04_at	0.8084518	SGN-U440153
TT23_L03_at	0.8075927	SGN-U444844
C10964_at	0.8063857	No available
EB439586_at	0.805881	SGN-U450430
BP533497_at	0.8055473	SGN-U439079
C11221_at	0.8012882	No available
EB449275_at	0.8003943	SGN-U441604
TT17_C16_at	0.800295	SGN-U462686
C2726_at	0.80006	SGN-U443997

Correlation Type:

Negative correlations (8 templates correlated)

Template	Pearson	Internal Mapping
EB426797_s_at	-0.8305494	SGN-U467518
C44_at	-0.8175863	SGN-U447267
BP532666_at	-0.8172961	SGN-U446384
BP532666_s_at	-0.8078569	SGN-U446384
C11039_at	-0.8075162	No available
C5458_at	-0.8033714	SGN-U427163
C8596_x_at	-0.8032603	SGN-U423832
TT14_E14_at	-0.8007462	SGN-U458874

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