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Expression Template: AB040410_at

Template Basic Information

Template name:	AB040410_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U443595
External db links:	GenBank: AB040410

Annotations for unigene SGN-U443595 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|10241935\|dbj\|BAB13711.1\|	210	1e-52	97.14	315 bp (38.9%)	3
Description:	elicitor inducible protein [Nicotiana tabacum]
arabidopsis	blastx	At3G10985.1	120	1e-27	53.64	315 bp (38.9%)	3
Description:	wound-responsive protein-related \| chr3:3442782-3443114 FORWARD
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
AB040410_at_probe_01	PM	data not available	data not available	1
AB040410_at_probe_02	PM	data not available	data not available	1
AB040410_at_probe_03	PM	data not available	data not available	1
AB040410_at_probe_04	PM	data not available	data not available	1
AB040410_at_probe_05	PM	data not available	data not available	1
AB040410_at_probe_06	PM	data not available	data not available	1
AB040410_at_probe_07	PM	data not available	data not available	1
AB040410_at_probe_08	PM	data not available	data not available	1
AB040410_at_probe_09	PM	data not available	data not available	1
AB040410_at_probe_10	PM	data not available	data not available	1
AB040410_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	9.94	10.00	0.18	0.02
	TobEA vegetative shoot apex	shoot apex	8	8	9.98	10.05	0.26	0.03
	TobEA closed bud	flower bud	5	5	9.29	9.26	0.11	0.01
	TobEA open bud	flower bud	5	5	9.19	9.21	0.10	0.01
	TobEA cotyledons	cotyledon	5	5	10.29	10.60	1.33	0.13
	TobEA flower	flower	5	5	10.45	10.54	0.33	0.03
	TobEA lower stem	stem internode	5	5	10.43	10.36	0.28	0.03
	TobEA upper stem	stem internode	5	5	9.83	9.93	0.42	0.04
	TobEA cauline leaf	cauline leaf	5	5	11.33	11.28	0.36	0.03
	TobEA early senescent leaf	adult vascular leaf	5	5	11.37	11.24	0.38	0.03
	TobEA late senescent leaf	adult vascular leaf	5	5	12.22	12.39	0.31	0.03
	TobEA mature leaf	adult vascular leaf	5	5	11.48	11.46	0.16	0.01
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	11.69	11.61	0.31	0.03
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	12.04	11.95	0.51	0.04
	TobEA young leaf	juvenile vascular leaf	5	5	10.00	9.97	0.18	0.02
	TobEA mature root	root	5	5	11.30	11.36	0.12	0.01
	TobEA young root	root	6	6	11.36	11.34	0.31	0.03
	TobEA seed	seed	6	6	10.06	10.31	0.54	0.05
	TobEA young shoot	shoot system	5	5	9.91	9.85	0.27	0.03

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 143.CEL	9.997399	2e-4	P
	Atlas 147.CEL	10.009233	2e-4	P
	Atlas 145.CEL	9.650218	0.001	P
	Atlas 146.CEL	10.136661	2e-4	P
	Atlas 144.CEL	9.887924	2e-4	P
TobEA vegetative shoot apex	Atlas 246.CEL	9.48694	2e-4	P
	Atlas 61.CEL	10.151778	2e-4	P
	Atlas 247.CEL	9.894388	7e-4	P
	Atlas 248.CEL	10.15216	7e-4	P
	Atlas 249.CEL	9.954334	2e-4	P
	Atlas 58.CEL	10.244238	2e-4	P
	Atlas 250.CEL	9.755813	7e-4	P
	Atlas 59.CEL	10.170369	2e-4	P
TobEA closed bud	Atlas 199.CEL	9.226441	7e-4	P
	Atlas 161.CEL	9.469467	2e-4	P
	Atlas 195.CEL	9.25699	7e-4	P
	Atlas 163.CEL	9.17394	2e-4	P
	Atlas 173.CEL	9.323705	2e-4	P
TobEA open bud	Atlas 167.CEL	9.119465	2e-4	P
	Atlas 244.CEL	9.3228245	2e-4	P
	Atlas 171.CEL	9.077604	2e-4	P
	Atlas 159.CEL	9.218115	2e-4	P
	Atlas 169.CEL	9.211049	2e-4	P
TobEA cotyledons	Atlas 69.CEL	10.604836	2e-4	P
	Atlas 74.CEL	8.901223	2e-4	P
	Atlas 75.CEL	8.89584	2e-4	P
	Atlas 70.CEL	11.726702	2e-4	P
	Atlas 71.CEL	11.319389	2e-4	P
TobEA flower	Atlas 165.CEL	10.877726	2e-4	P
	Atlas 197.CEL	10.107166	7e-4	P
	Atlas 158.CEL	10.587529	2e-4	P
	Atlas 166.CEL	10.538938	7e-4	P
	Atlas 198.CEL	10.115781	7e-4	P
TobEA lower stem	Atlas 200.CEL	10.33458	2e-4	P
	Atlas 164.CEL	10.918412	2e-4	P
	Atlas 174.CEL	10.362816	2e-4	P
	Atlas 245.CEL	10.364244	2e-4	P
	Atlas 172.CEL	10.171798	2e-4	P
TobEA upper stem	Atlas 170.CEL	10.106119	2e-4	P
	Atlas 196.CEL	9.166866	2e-4	P
	Atlas 162.CEL	10.254764	2e-4	P
	Atlas 160.CEL	9.711449	2e-4	P
	Atlas 168.CEL	9.929442	2e-4	P
TobEA cauline leaf	Atlas 235.CEL	11.181094	2e-4	P
	Atlas 237.CEL	11.83247	2e-4	P
	Atlas 229.CEL	11.282887	2e-4	P
	Atlas 231.CEL	11.481593	2e-4	P
	Atlas 233.CEL	10.852462	2e-4	P
TobEA early senescent leaf	Atlas 182.CEL	11.243435	2e-4	P
	Atlas 187.CEL	11.658061	7e-4	P
	Atlas 191.CEL	11.091051	2e-4	P
	Atlas 175.CEL	11.872346	2e-4	P
	Atlas 183.CEL	10.966648	7e-4	P
TobEA late senescent leaf	Atlas 178.CEL	12.386943	2e-4	P
	Atlas 190.CEL	12.429633	7e-4	P
	Atlas 194.CEL	11.984128	2e-4	P
	Atlas 179.CEL	11.798859	2e-4	P
	Atlas 186.CEL	12.492036	7e-4	P
TobEA mature leaf	Atlas 93.CEL	11.463914	2e-4	P
	Atlas 95.CEL	11.536525	2e-4	P
	Atlas 96.CEL	11.706336	2e-4	P
	Atlas 97.CEL	11.273513	2e-4	P
	Atlas 94.CEL	11.424879	2e-4	P
TobEA mid/early senescent leaf	Atlas 181.CEL	12.044966	7e-4	P
	Atlas 184.CEL	11.287039	2e-4	P
	Atlas 188.CEL	11.976026	2e-4	P
	Atlas 192.CEL	11.611973	2e-4	P
	Atlas 176.CEL	11.54892	2e-4	P
TobEA mid/late senescent leaf	Atlas 177.CEL	12.479665	2e-4	P
	Atlas 193.CEL	11.552267	2e-4	P
	Atlas 180.CEL	12.647603	2e-4	P
	Atlas 185.CEL	11.554163	7e-4	P
	Atlas 189.CEL	11.953149	2e-4	P
TobEA young leaf	Atlas 53.CEL	10.312244	2e-4	P
	Atlas 56.CEL	9.980016	2e-4	P
	Atlas 57.CEL	9.974015	2e-4	P
	Atlas 54.CEL	9.847848	2e-4	P
	Atlas 55.CEL	9.877684	2e-4	P
TobEA mature root	Atlas 64.CEL	11.122424	2e-4	P
	Atlas 65.CEL	11.389762	2e-4	P
	Atlas 63.CEL	11.229598	2e-4	P
	Atlas 66.CEL	11.39055	2e-4	P
	Atlas 67.CEL	11.362803	2e-4	P
TobEA young root	Atlas 39.CEL	11.654881	2e-4	P
	Atlas 40.CEL	11.529851	2e-4	P
	Atlas 42.CEL	11.050083	2e-4	P
	Atlas 41.CEL	11.049743	2e-4	P
	Atlas 43.CEL	11.156099	2e-4	P
	Atlas 44.CEL	11.722285	2e-4	P
TobEA seed	Atlas 78.CEL	9.475045	2e-4	P
	Atlas 79.CEL	9.284107	2e-4	P
	Atlas 99.CEL	10.55656	2e-4	P
	Atlas 76.CEL	10.434051	2e-4	P
	Atlas 77.CEL	10.268321	2e-4	P
	Atlas 98.CEL	10.348222	2e-4	P
TobEA young shoot	Atlas 88.CEL	10.079304	2e-4	P
	Atlas 89.CEL	9.577476	7e-4	P
	Atlas 86.CEL	9.853892	2e-4	P
	Atlas 90.CEL	9.765809	2e-4	P
	Atlas 87.CEL	10.281795	2e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (55 templates correlated)

Template	Pearson	Internal Mapping
C5347_s_at	0.8891068	SGN-U447575
C10315_s_at	0.8884518	SGN-U434021
DW005103_x_at	0.8849718	SGN-U424714
EB682949_s_at	0.8790252	SGN-U424714
EB443629_x_at	0.8667822	SGN-U461143
C2471_s_at	0.8657819	SGN-U424714
EB443897_at	0.8609272	SGN-U436068
C7016_s_at	0.8529057	SGN-U440573
C4283_at	0.8475193	SGN-U445294
EB432642_at	0.8471475	SGN-U421259
C2989_s_at	0.8439733	SGN-U425552
C4904_at	0.843041	SGN-U428778
TT16_D19_at	0.8408533	SGN-U448065
C640_x_at	0.8386855	SGN-U425551
C2736_s_at	0.8364462	SGN-U446625
EB443629_at	0.8355448	SGN-U461143
C2332_at	0.831723	SGN-U439061
BC4M4328_s_at	0.8295941	No available
EB444850_s_at	0.8291539	SGN-U455277
EB430774_s_at	0.8290836	SGN-U441567
C4543_at	0.8287231	SGN-U432117
EB436205_x_at	0.8272746	SGN-U446551
C11410_at	0.826476	No available
TT34_L23_at	0.8233431	SGN-U465304
EB443094_at	0.8205026	SGN-U445419
U90214_at	0.8204527	SGN-U448525
C10857_at	0.819126	SGN-U430785
C11335_at	0.8190851	SGN-U430071
C2103_at	0.8190764	SGN-U434234
C7495_at	0.8175155	SGN-U431475
C9351_at	0.8172762	SGN-U424693
C9519_at	0.8169916	No available
TT36_I15_at	0.8132109	SGN-U439267
BP532920_at	0.8110412	SGN-U449307
EB683099_at	0.8105242	SGN-U424777
C9373_at	0.8104614	SGN-U441835
C5378_at	0.8072004	SGN-U425552
C11470_at	0.8070145	SGN-U455637
EB445491_at	0.8066101	SGN-U438152
EB444345_at	0.8060382	No available
TT34_N01_at	0.8049236	SGN-U472541
C1911_at	0.8043559	SGN-U425968
C5369_at	0.8041897	SGN-U448763
BP531765_s_at	0.8038073	SGN-U425552
C6798_at	0.8029417	SGN-U426845
DV999436_x_at	0.8027482	SGN-U440802
AY971376_s_at	0.8027397	No available
C600_s_at	0.8027053	SGN-U451237
EB431225_at	0.8025991	SGN-U439732
BP134734_s_at	0.8024302	SGN-U447653
C6912_at	0.8020808	SGN-U433685
C10658_at	0.8016563	SGN-U429141
C10580_s_at	0.801008	SGN-U451237
DW002853_at	0.8002151	SGN-U463952
CV019550_s_at	0.8000048	SGN-U450542

Correlation Type:

Negative correlations (18 templates correlated)

Template	Pearson	Internal Mapping
C2287_at	-0.8475107	SGN-U451225
C11147_at	-0.8437347	No available
BP530860_at	-0.8413592	SGN-U451227
DW001196_at	-0.833974	SGN-U425135
BP530286_at	-0.8313104	SGN-U449764
EB438765_at	-0.8234789	SGN-U482105
C6756_at	-0.819575	SGN-U423449
TT18_K19_at	-0.818537	SGN-U437488
C802_at	-0.8128798	SGN-U434809
C5383_at	-0.8114751	SGN-U426746
EB428960_at	-0.8113884	SGN-U436892
TT30_F22_at	-0.8108041	SGN-U441930
EB681684_at	-0.8104323	SGN-U434493
TT30_K08_at	-0.8084506	SGN-U433292
EB428971_at	-0.8079864	SGN-U449765
C704_at	-0.804014	SGN-U441496
C11577_at	-0.8009691	SGN-U437946
EB682347_at	-0.800519	SGN-U495318

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