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Expression Template: AJ717892_at

Template Basic Information

Template name:	AJ717892_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U439292
External db links:	GenBank: AJ717892

Annotations for unigene SGN-U439292 (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147845807\|emb\|CAN80099.1\|	73.6	1e-11	26.56	687 bp (89.3%)	3
Description:	hypothetical protein [Vitis vinifera]
arabidopsis	blastx	No significant hits (or none blast was used over this dataset)
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
AJ717892_at_probe_01	PM	data not available	data not available	1
AJ717892_at_probe_02	PM	data not available	data not available	1
AJ717892_at_probe_03	PM	data not available	data not available	1
AJ717892_at_probe_04	PM	data not available	data not available	1
AJ717892_at_probe_05	PM	data not available	data not available	1
AJ717892_at_probe_06	PM	data not available	data not available	1
AJ717892_at_probe_07	PM	data not available	data not available	1
AJ717892_at_probe_08	PM	data not available	data not available	1
AJ717892_at_probe_09	PM	data not available	data not available	1
AJ717892_at_probe_10	PM	data not available	data not available	1
AJ717892_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	8.74	8.77	0.11	0.01
	TobEA vegetative shoot apex	shoot apex	8	8	8.00	8.33	1.00	0.13
	TobEA closed bud	flower bud	5	5	8.85	8.77	0.17	0.02
	TobEA open bud	flower bud	5	5	8.45	8.31	0.27	0.03
	TobEA cotyledons	cotyledon	5	5	8.00	8.07	0.17	0.02
	TobEA flower	flower	5	5	8.60	8.53	0.13	0.01
	TobEA lower stem	stem internode	5	5	8.77	8.84	0.23	0.03
	TobEA upper stem	stem internode	5	5	8.33	8.16	0.33	0.04
	TobEA cauline leaf	cauline leaf	5	5	8.70	8.74	0.11	0.01
	TobEA early senescent leaf	adult vascular leaf	5	5	7.64	7.78	0.55	0.07
	TobEA late senescent leaf	adult vascular leaf	5	5	8.10	8.04	0.39	0.05
	TobEA mature leaf	adult vascular leaf	5	5	8.53	8.51	0.09	0.01
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	7.42	7.51	0.51	0.07
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	7.72	7.80	1.00	0.13
	TobEA young leaf	juvenile vascular leaf	5	5	8.04	8.32	0.62	0.08
	TobEA mature root	root	5	5	8.51	8.44	0.16	0.02
	TobEA young root	root	6	6	7.55	7.70	0.47	0.06
	TobEA seed	seed	6	6	7.10	7.12	0.33	0.05
	TobEA young shoot	shoot system	5	5	8.17	8.38	0.37	0.05

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 143.CEL	8.766619	2e-4	P
	Atlas 147.CEL	8.828368	2e-4	P
	Atlas 146.CEL	8.573856	2e-4	P
	Atlas 144.CEL	8.820091	2e-4	P
	Atlas 145.CEL	8.699645	2e-4	P
TobEA vegetative shoot apex	Atlas 246.CEL	8.743268	2e-4	P
	Atlas 250.CEL	8.843051	2e-4	P
	Atlas 58.CEL	7.360521	2e-4	P
	Atlas 248.CEL	7.3693733	2e-4	P
	Atlas 249.CEL	8.920954	2e-4	P
	Atlas 61.CEL	8.013861	2e-4	P
	Atlas 247.CEL	8.646219	2e-4	P
	Atlas 59.CEL	6.068216	2e-4	P
TobEA closed bud	Atlas 161.CEL	9.100177	2e-4	P
	Atlas 173.CEL	8.691748	2e-4	P
	Atlas 163.CEL	8.97359	2e-4	P
	Atlas 195.CEL	8.769677	2e-4	P
	Atlas 199.CEL	8.737417	2e-4	P
TobEA open bud	Atlas 169.CEL	8.702166	2e-4	P
	Atlas 167.CEL	8.783096	2e-4	P
	Atlas 171.CEL	8.31058	2e-4	P
	Atlas 244.CEL	8.263499	2e-4	P
	Atlas 159.CEL	8.183512	2e-4	P
TobEA cotyledons	Atlas 74.CEL	8.141215	7e-4	P
	Atlas 71.CEL	8.1400175	7e-4	P
	Atlas 69.CEL	7.8011246	2e-4	P
	Atlas 70.CEL	7.826353	2e-4	P
	Atlas 75.CEL	8.073988	2e-4	P
TobEA flower	Atlas 165.CEL	8.528243	2e-4	P
	Atlas 158.CEL	8.7555	2e-4	P
	Atlas 166.CEL	8.492446	2e-4	P
	Atlas 197.CEL	8.729717	2e-4	P
	Atlas 198.CEL	8.513961	2e-4	P
TobEA lower stem	Atlas 200.CEL	8.369198	2e-4	P
	Atlas 164.CEL	8.841658	2e-4	P
	Atlas 172.CEL	8.929829	2e-4	P
	Atlas 245.CEL	8.824839	2e-4	P
	Atlas 174.CEL	8.895503	2e-4	P
TobEA upper stem	Atlas 196.CEL	8.4928255	2e-4	P
	Atlas 160.CEL	8.059165	2e-4	P
	Atlas 168.CEL	8.107591	2e-4	P
	Atlas 162.CEL	8.843306	2e-4	P
	Atlas 170.CEL	8.158918	2e-4	P
TobEA cauline leaf	Atlas 235.CEL	8.737282	2e-4	P
	Atlas 231.CEL	8.754724	2e-4	P
	Atlas 233.CEL	8.801624	2e-4	P
	Atlas 229.CEL	8.705202	2e-4	P
	Atlas 237.CEL	8.513196	2e-4	P
TobEA early senescent leaf	Atlas 175.CEL	6.843132	0.001	P
	Atlas 183.CEL	7.7836323	2e-4	P
	Atlas 187.CEL	8.0118265	7e-4	P
	Atlas 191.CEL	8.212454	2e-4	P
	Atlas 182.CEL	7.328361	7e-4	P
TobEA late senescent leaf	Atlas 179.CEL	7.9307156	2e-4	P
	Atlas 178.CEL	8.079663	2e-4	P
	Atlas 186.CEL	7.684828	2e-4	P
	Atlas 190.CEL	8.036999	2e-4	P
	Atlas 194.CEL	8.746803	2e-4	P
TobEA mature leaf	Atlas 94.CEL	8.395324	2e-4	P
	Atlas 95.CEL	8.506882	7e-4	P
	Atlas 93.CEL	8.50783	2e-4	P
	Atlas 96.CEL	8.574335	2e-4	P
	Atlas 97.CEL	8.650277	2e-4	P
TobEA mid/early senescent leaf	Atlas 181.CEL	7.7667646	7e-4	P
	Atlas 184.CEL	6.997007	2e-4	P
	Atlas 188.CEL	8.014819	2e-4	P
	Atlas 192.CEL	7.506778	7e-4	P
	Atlas 176.CEL	6.794029	2e-4	P
TobEA mid/late senescent leaf	Atlas 177.CEL	6.1915827	2e-4	P
	Atlas 180.CEL	7.7985005	7e-4	P
	Atlas 185.CEL	8.317703	0.002	P
	Atlas 189.CEL	8.823963	0.001	P
	Atlas 193.CEL	7.4536123	2e-4	P
TobEA young leaf	Atlas 53.CEL	8.045474	2e-4	P
	Atlas 54.CEL	6.9605074	2e-4	P
	Atlas 57.CEL	8.44788	2e-4	P
	Atlas 56.CEL	8.320853	2e-4	P
	Atlas 55.CEL	8.42289	2e-4	P
TobEA mature root	Atlas 63.CEL	8.755236	2e-4	P
	Atlas 67.CEL	8.579633	2e-4	P
	Atlas 66.CEL	8.436985	2e-4	P
	Atlas 64.CEL	8.412485	2e-4	P
	Atlas 65.CEL	8.355476	2e-4	P
TobEA young root	Atlas 41.CEL	7.5036387	2e-4	P
	Atlas 42.CEL	7.905791	2e-4	P
	Atlas 40.CEL	8.019449	2e-4	P
	Atlas 44.CEL	7.8883686	2e-4	P
	Atlas 39.CEL	7.077078	2e-4	P
	Atlas 43.CEL	6.893108	2e-4	P
TobEA seed	Atlas 79.CEL	6.9018893	0.008	P
	Atlas 98.CEL	7.4497766	2e-4	P
	Atlas 99.CEL	6.669582	2e-4	P
	Atlas 77.CEL	7.3403597	2e-4	P
	Atlas 78.CEL	7.387165	2e-4	P
	Atlas 76.CEL	6.8570867	2e-4	P
TobEA young shoot	Atlas 90.CEL	7.5948906	2e-4	P
	Atlas 87.CEL	8.4123335	2e-4	P
	Atlas 88.CEL	8.376705	2e-4	P
	Atlas 89.CEL	7.996277	2e-4	P
	Atlas 86.CEL	8.464764	2e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (9 templates correlated)

Template	Pearson	Internal Mapping
EB441552_at	0.8325346	SGN-U500107
DV162387_at	0.829924	SGN-U434977
BP134759_s_at	0.8290349	SGN-U439220
BP129051_at	0.8277078	SGN-U490412
EB442388_at	0.8259847	SGN-U430627
BP128764_at	0.8167097	SGN-U442798
EB427758_at	0.8082488	SGN-U430385
AJ717892_s_at	0.8025718	SGN-U439292
BP133858_at	0.801401	SGN-U450746

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