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Expression Template: LesAffx.16952.2.S1_at

Template Basic Information

Template name:	LesAffx.16952.2.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U568424
External db links:	GenBank: AA824982

Annotations for unigene SGN-U568424 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLEM-1-O17, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: divalent cation tolerance protein Annotation Keywords: other

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157335801\|emb\|CAO61631.1\|	259	3e-67	74.72	525 bp (57.8%)	3
Description:	unnamed
arabidopsis	blastx	At2G33740.2	223	1e-58	70.76	504 bp (55.5%)	3
Description:	Symbols: CUTA \| CUTA \| chr2:14276666-14278599 FORWARD
swissprot	blastx	P93009	223	9e-58	70.76	504 bp (55.5%)	3
Description:	Protein CutA, chloroplastic OS=Arabidopsis thaliana GN=CUTA PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.16952.2.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.16952.2.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.16952.2.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.16952.2.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.16952.2.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.16952.2.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.16952.2.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.16952.2.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.16952.2.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.16952.2.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.16952.2.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	17.59	17.59	3.14	0.18
	Gene expression data from Aft red fruit flesh	endocarp	3	3	26.57	25.03	5.69	0.21
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	34.01	33.59	0.99	0.03
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	34.59	50.01	30.02	0.87
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	20.03	20.03	9.39	0.47
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	17.04	17.04	2.69	0.16
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	28.66	26.56	3.80	0.13
	Gene expression data from Aft red fruit peel	exocarp	3	3	39.49	37.77	8.14	0.21
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	25.94	29.82	7.32	0.28
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	61.12	57.39	11.61	0.19
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	13.14	13.33	1.68	0.13
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	27.41	27.41	4.63	0.17
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	25.91	27.13	8.34	0.32
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	18.79	18.79	1.85	0.10
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	70.96	75.29	31.31	0.44
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	19.48	19.48	2.58	0.13
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	13.36	13.36	3.81	0.29
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	18.26	19.23	3.52	0.19
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	11.17	10.86	2.63	0.24
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	26.31	25.19	7.87	0.30
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	14.74	14.73	1.18	0.08
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	23.13	21.62	4.47	0.19
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	57.66	59.14	22.94	0.40
	Gene expression data from Micro-Tom root	root	3	3	8.75	8.19	1.67	0.19

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	15.3696	0.068	A
	GSM480170 extract 1	19.8052	0.068	A
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	32.8685	0.006	P
	GSM480205 extract 1	25.0264	7e-4	P
	GSM480203 extract 1	21.8112	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	33.5889	2e-4	P
	GSM480213 extract 1	33.3019	2e-4	P
	GSM480214 extract 1	35.1398	7e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	50.0125	7e-4	P
	GSM480215 extract 1	53.7711	2e-4	P
	GSM480216 extract 1		0e+0	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	13.392	0.246	A
	GSM480186 extract 1	26.6778	0.006	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	15.1389	0.046	P
	GSM480184 extract 1	18.9381	0.008	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	26.557	2e-4	P
	GSM480206 extract 1	33.0456	0.001	P
	GSM480207 extract 1	26.3759	0.003	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	32.3506	7e-4	P
	GSM480210 extract 1	48.3528	2e-4	P
	GSM480211 extract 1	37.7724	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	30.4905	2e-4	P
	GSM480219 extract 1	17.4941	0.004	P
	GSM480220 extract 1	29.8226	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	57.3918	2e-4	P
	GSM480223 extract 1	51.8343	0.003	P
	GSM480221 extract 1	74.1407	7e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	14.7219	0.030	P
	GSM480190 extract 1	13.3314	0.038	P
	GSM480191 extract 1	11.3783	0.081	A
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	24.1361	0.003	P
	GSM480195 extract 1	30.6807	0.002	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	33.576	0.006	P
	GSM480198 extract 1	17.0212	0.030	P
	GSM480199 extract 1	27.1306	0.002	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	20.0928	0.030	P
	GSM480194 extract 1	17.4818	0.002	P
Gene expression data from Momotaro8 red fruit peel	GSM480231 extract 1	33.2447	2e-4	P
	GSM480229 extract 1	93.1405	2e-4	P
	GSM480230 extract 1	100.009	2e-4	P
	GSM480228 extract 1	57.4412	7e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	21.308	0.011	P
	GSM480169 extract 1	17.6545	0.019	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	10.6661	0.068	A
	GSM480173 extract 1	16.0527	0.068	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	21.1883	0.112	A
	GSM480176 extract 1	14.361	0.068	A
	GSM480174 extract 1	19.2332	0.171	A
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	8.69978	0.112	A
	GSM480179 extract 1	13.9354	0.002	P
	GSM480178 extract 1	10.8638	0.081	A
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	34.682	0.004	P
	GSM480201 extract 1	25.1891	0.006	P
	GSM480202 extract 1	19.0671	0.001	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	15.9265	0.130	A
	GSM480180 extract 1	14.7307	0.150	A
	GSM480182 extract 1	13.5568	0.056	M
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	21.6195	0.038	P
	GSM480188 extract 1	19.6142	0.030	P
	GSM480187 extract 1	28.16	0.056	M
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	56.441	7e-4	P
	GSM480227 extract 1	28.293	7e-4	P
	GSM480225 extract 1	84.0569	2e-4	P
	GSM480224 extract 1	61.8429	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	8.1867	0.246	A
	GSM480165 extract 1	7.43807	0.219	A
	GSM480166 extract 1	10.6379	0.150	A

Correlation analysis (0)

No correlation analysis was found associated to this template

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