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Expression Template: LesAffx.52435.3.A1_at

Template Basic Information

Template name:	LesAffx.52435.3.A1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U576835
External db links:	GenBank: AA824761

Annotations for unigene SGN-U576835 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLEI-16-I2, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: clathrin-associated protein Annotation Keywords: transport; intracellular transport; vesicle formation; vesicle transport; protein transport

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157347018\|emb\|CAO17400.1\|	725		82.89	1245 bp (79.2%)	1
Description:	unnamed
arabidopsis	blastx	At1G56590.1	699		80.19	1242 bp (79.1%)	1
Description:	clathrin adaptor complexes medium subunit family protein \| chr1:21205915-21208362 REVERSE
swissprot	blastx	P53678	351	6e-96	43.03	1245 bp (79.2%)	1
Description:	AP-3 complex subunit mu-2 OS=Rattus norvegicus GN=Ap3m2 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.52435.3.A1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.52435.3.A1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.52435.3.A1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.52435.3.A1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.52435.3.A1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.52435.3.A1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.52435.3.A1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.52435.3.A1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.52435.3.A1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.52435.3.A1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.52435.3.A1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	4.32	4.32	1.29	0.30
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	8.80	8.94	4.43	0.50
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	3.77	4.42	3.49	0.93
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	6.72	6.72	1.36	0.20
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	5.14	4.15	2.20	0.43
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	10.97	11.57	2.92	0.27
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	6.68	6.89	0.61	0.09
	Gene expression data from Aft red fruit peel	exocarp	3	3	6.70	6.34	1.12	0.17
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	6.67	7.11	1.16	0.17
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	7.04	9.24	3.94	0.56
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	10.35	10.89	3.97	0.38
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	6.91	6.91	2.73	0.39
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	10.72	11.19	0.96	0.09
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	7.74	7.74	0.08	0.01
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	5.91	5.03	4.48	0.76
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	8.04	8.04	0.63	0.08
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	4.92	4.92	1.73	0.35
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	11.48	11.30	1.43	0.12
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	8.44	8.44	0.27	0.03
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	7.52	8.39	2.68	0.36
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	5.00	5.53	1.05	0.21
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	11.02	14.56	6.22	0.56
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	7.09	7.09	2.25	0.32
	Gene expression data from Micro-Tom root	root	3	3	8.63	8.39	1.32	0.15

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	3.41181	0.246	A
	GSM480171 extract 1	5.22921	0.246	A
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	13.1561	0.014	P
	GSM480213 extract 1	8.9383	0.038	P
	GSM480214 extract 1	4.29181	0.046	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	6.88618	0.046	P
	GSM480216 extract 1		0e+0	P
	GSM480217 extract 1	4.41823	0.399	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	7.67701	0.095	A
	GSM480186 extract 1	5.75809	0.014	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	7.6543	0.004	P
	GSM480189 extract 1	4.14707	0.038	P
	GSM480187 extract 1	3.61166	0.366	A
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	13.2332	7e-4	P
	GSM480225 extract 1	13.4222	0.219	A
	GSM480227 extract 1	7.3219	7e-4	P
	GSM480226 extract 1	9.91264	0.056	M
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	6.88868	0.081	A
	GSM480206 extract 1	5.9971	0.095	A
	GSM480207 extract 1	7.16439	0.046	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	5.79505	0.130	A
	GSM480209 extract 1	7.95494	0.130	A
	GSM480210 extract 1	6.34298	0.019	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	7.53453	0.019	P
	GSM480220 extract 1	7.11464	0.171	A
	GSM480218 extract 1	5.35112	0.056	M
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	9.24313	0.056	M
	GSM480223 extract 1	2.4949	0.366	A
	GSM480222 extract 1	9.38032	0.024	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	6.14293	0.030	P
	GSM480192 extract 1	10.8874	0.028	P
	GSM480190 extract 1	14.018	0.014	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	8.8335	0.024	P
	GSM480196 extract 1	4.97959	0.219	A
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	11.3467	0.006	P
	GSM480199 extract 1	9.61754	0.004	P
	GSM480198 extract 1	11.1854	0.030	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	7.79665	0.112	A
	GSM480194 extract 1	7.68717	0.003	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	5.74409	0.432	A
	GSM480228 extract 1	1.51053	0.399	A
	GSM480231 extract 1	12.0886	0.002	P
	GSM480230 extract 1	4.31379	0.366	A
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	7.58975	0.011	P
	GSM480168 extract 1	8.48487	0.003	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	3.69407	0.095	A
	GSM480172 extract 1	6.14014	0.112	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	12.9911	0.112	A
	GSM480176 extract 1	11.2953	0.171	A
	GSM480175 extract 1	10.1415	0.095	A
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	8.71622	0.068	A
	GSM480177 extract 1	8.43954	0.130	A
	GSM480178 extract 1	8.16687	0.246	A
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	8.38604	0.004	P
	GSM480200 extract 1	9.65973	0.095	A
	GSM480202 extract 1	4.51226	0.044	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	3.79177	0.171	A
	GSM480204 extract 1	5.69206	0.024	P
	GSM480203 extract 1	5.52696	0.011	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	14.5618	2e-4	P
	GSM480181 extract 1	14.6654	0.011	P
	GSM480182 extract 1	3.84432	0.171	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	8.68135	0.068	A
	GSM480184 extract 1	5.49698	0.081	A
Gene expression data from Micro-Tom root	GSM480165 extract 1	7.44497	0.213	A
	GSM480166 extract 1	8.38525	0.056	M
	GSM480167 extract 1	10.0475	0.011	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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