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Expression Template: LesAffx.31317.17.A1_at

Template Basic Information

Template name:	LesAffx.31317.17.A1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U578650
External db links:	GenBank: AI483639

Annotations for unigene SGN-U578650 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLEC-6-K12, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "proteasome, regulatory subunit" Annotation Keywords: protein degredation; proteasome; proteasome regulatory subunit

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|77745499\|gb\|ABB02648.1\|	595	3e-168	98.06	930 bp (69.0%)	1
Description:	unknown [Solanum tuberosum]
arabidopsis	blastx	At5G05780.1	549	2e-156	88.64	924 bp (68.5%)	1
Description:	Symbols: AE3, ATHMOV34 \| ATHMOV34 (ASYMMETRIC LEAVES ENHANCER3) \| chr5:1735863-1738177 FORWARD
swissprot	blastx	O24412	549	2e-155	88.64	924 bp (68.5%)	1
Description:	Probable 26S proteasome non-ATPase regulatory subunit 7 OS=Arabidopsis thaliana GN=RPN8 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.31317.17.A1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.31317.17.A1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.31317.17.A1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.31317.17.A1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.31317.17.A1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.31317.17.A1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.31317.17.A1_at:ProbePair9	PM	data not available	data not available	data not available
LesAffx.31317.17.A1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.31317.17.A1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.31317.17.A1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.31317.17.A1_at:ProbePair2	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	14.89	14.89	17.78	1.19
	Gene expression data from Aft red fruit flesh	endocarp	3	3	67.93	73.72	12.49	0.18
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	16.93	15.32	4.31	0.25
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	213.87	251.27	97.66	0.46
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	303.16	293.25	48.15	0.16
	Gene expression data from Aft red fruit peel	exocarp	3	3	350.35	369.73	72.16	0.21
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	126.97	124.30	20.19	0.16
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	210.68	212.87	5.85	0.03
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	22.12	20.35	4.45	0.20
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	24.63	24.63	0.37	0.02
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	28.07	29.99	5.19	0.18
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	20.27	20.27	8.10	0.40
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	209.80	240.70	96.94	0.46
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	14.31	14.31	9.34	0.65
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	12.82	12.82	1.18	0.09
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	8.33	5.47	6.41	0.77
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	9.40	10.63	5.87	0.62
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	225.95	249.11	45.96	0.20
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	119.21	112.15	13.32	0.11
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	86.05	124.92	74.64	0.87
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	17.39	17.17	2.99	0.17
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	16.18	16.18	3.70	0.23
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	12.16	12.16	5.94	0.49
	Gene expression data from Micro-Tom root	root	3	3	24.92	25.54	7.09	0.28

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	2.31818	0.601	A
	GSM480170 extract 1	27.4592	0.001	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	76.4677	7e-4	P
	GSM480205 extract 1	53.5854	7e-4	P
	GSM480204 extract 1	73.7226	7e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	15.3197	0.081	A
	GSM480187 extract 1	21.8112	0.038	P
	GSM480188 extract 1	13.6627	0.019	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	283.63	2e-4	P
	GSM480224 extract 1	256.58	2e-4	P
	GSM480226 extract 1	245.952	2e-4	P
	GSM480227 extract 1	69.326	7e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	293.248	2e-4	P
	GSM480206 extract 1	355.493	2e-4	P
	GSM480208 extract 1	260.726	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	410.839	2e-4	P
	GSM480211 extract 1	369.73	2e-4	P
	GSM480209 extract 1	270.486	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	108.255	2e-4	P
	GSM480220 extract 1	148.366	2e-4	P
	GSM480218 extract 1	124.298	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	215.114	2e-4	P
	GSM480223 extract 1	204.049	2e-4	P
	GSM480222 extract 1	212.871	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	18.8223	0.008	P
	GSM480190 extract 1	27.1745	0.030	P
	GSM480191 extract 1	20.3507	0.004	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	24.8932	0.008	P
	GSM480195 extract 1	24.3671	0.011	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	32.0345	0.002	P
	GSM480198 extract 1	29.987	0.014	P
	GSM480199 extract 1	22.2	0.006	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	14.5431	0.003	P
	GSM480194 extract 1	25.9989	0.024	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	210.596	2e-4	P
	GSM480229 extract 1	270.8	2e-4	P
	GSM480230 extract 1	285.113	2e-4	P
	GSM480231 extract 1	72.6922	7e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	20.9173	0.006	P
	GSM480169 extract 1	7.70625	0.030	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	13.6566	0.112	A
	GSM480172 extract 1	11.9853	0.171	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	5.47219	0.466	A
	GSM480174 extract 1	3.85299	0.568	A
	GSM480176 extract 1	15.6695	0.219	A
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	10.6295	0.068	A
	GSM480178 extract 1	3.01089	0.399	A
	GSM480177 extract 1	14.56	0.001	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	249.11	2e-4	P
	GSM480202 extract 1	255.724	2e-4	P
	GSM480200 extract 1	173.024	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	110.903	2e-4	P
	GSM480212 extract 1	134.574	2e-4	P
	GSM480213 extract 1	112.148	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1		0e+0	P
	GSM480217 extract 1	124.921	2e-4	P
	GSM480215 extract 1	133.238	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	17.1664	0.004	P
	GSM480181 extract 1	14.5241	0.044	P
	GSM480182 extract 1	20.4939	0.038	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	13.558	0.038	P
	GSM480186 extract 1	18.793	0.046	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	7.9585	0.081	A
	GSM480184 extract 1	16.3537	0.095	A
Gene expression data from Micro-Tom root	GSM480165 extract 1	25.5429	0.003	P
	GSM480166 extract 1	31.6742	0.006	P
	GSM480167 extract 1	17.5316	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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