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Expression Template: LesAffx.55310.1.S1_at

Template Basic Information

Template name:	LesAffx.55310.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U584232
External db links:	GenBank: AW928357

Annotations for unigene SGN-U584232 (manual: 0 | blast: 2 | go: 1 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147772655\|emb\|CAN62851.1\|	383	1e-104	64.81	792 bp (97.2%)	2
Description:	hypothetical protein [Vitis vinifera]
arabidopsis	blastx	At3G06080.2	362	1e-100	61.36	792 bp (97.2%)	2
Description:	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19160.1); similar to expressed pro&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

GO:0005554molecular_function unknown

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.55310.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.55310.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.55310.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.55310.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.55310.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.55310.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.55310.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.55310.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.55310.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.55310.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.55310.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	89.32	89.32	23.19	0.26
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	186.28	208.48	39.69	0.21
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	129.25	133.84	19.15	0.15
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	196.67	232.52	66.30	0.34
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	133.71	134.84	16.94	0.13
	Gene expression data from Aft red fruit peel	exocarp	3	3	44.79	45.46	6.74	0.15
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	102.79	101.98	4.34	0.04
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	23.18	22.53	1.65	0.07
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	106.49	107.19	21.86	0.21
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	72.01	72.01	62.75	0.87
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	34.34	31.44	7.12	0.21
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	63.84	63.84	12.73	0.20
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	29.77	22.09	16.31	0.55
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	77.36	77.36	26.36	0.34
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	60.32	60.32	10.04	0.17
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	138.03	134.61	19.01	0.14
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	117.83	97.74	35.02	0.30
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	87.58	86.94	13.49	0.15
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	33.84	45.69	29.75	0.88
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	128.16	128.16	89.07	0.69
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	52.83	56.20	6.84	0.13
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	114.84	114.84	36.67	0.32
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	62.99	52.27	39.62	0.63
	Gene expression data from Micro-Tom root	root	3	3	84.68	88.85	13.17	0.16

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	105.711	2e-4	P
	GSM480170 extract 1	72.92	7e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	208.475	2e-4	P
	GSM480201 extract 1	209.906	0.001	P
	GSM480202 extract 1	140.462	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	145.676	0.001	P
	GSM480213 extract 1	133.843	7e-4	P
	GSM480214 extract 1	108.217	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	120.161	7e-4	P
	GSM480180 extract 1	237.33	2e-4	P
	GSM480181 extract 1	232.518	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	134.839	7e-4	P
	GSM480207 extract 1	150.053	2e-4	P
	GSM480206 extract 1	116.227	0.002	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	51.1701	0.002	P
	GSM480211 extract 1	37.746	0.001	P
	GSM480210 extract 1	45.4589	7e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	101.979	0.001	P
	GSM480220 extract 1	107.482	2e-4	P
	GSM480218 extract 1	98.9096	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	22.5302	0.095	A
	GSM480223 extract 1	21.9602	0.014	P
	GSM480222 extract 1	25.0602	0.019	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	84.2877	2e-4	P
	GSM480190 extract 1	107.193	0.001	P
	GSM480191 extract 1	127.986	7e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	27.6413	0.011	P
	GSM480195 extract 1	116.382	0.002	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	29.126	0.006	P
	GSM480199 extract 1	31.4408	0.003	P
	GSM480197 extract 1	42.4462	0.006	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	72.8383	0.001	P
	GSM480193 extract 1	54.8359	7e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	21.9298	0.112	A
	GSM480228 extract 1	20.6885	0.024	P
	GSM480230 extract 1	22.2438	0.095	A
	GSM480231 extract 1	54.2054	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	95.9971	7e-4	P
	GSM480168 extract 1	58.7234	7e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	67.419	7e-4	P
	GSM480173 extract 1	53.2228	0.002	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	134.607	7e-4	P
	GSM480174 extract 1	158.513	7e-4	P
	GSM480176 extract 1	120.962	7e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	158.27	7e-4	P
	GSM480178 extract 1	97.739	0.001	P
	GSM480177 extract 1	97.4895	0.001	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	86.9448	0.002	P
	GSM480203 extract 1	74.4172	0.002	P
	GSM480205 extract 1	101.377	7e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	55.8416	0.008	P
	GSM480215 extract 1	45.6897	0.001	P
	GSM480216 extract 1		0e+0	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	65.184	0.001	P
	GSM480185 extract 1	191.144	7e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	56.1997	7e-4	P
	GSM480188 extract 1	57.3267	2e-4	P
	GSM480189 extract 1	44.9575	0.002	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	88.9143	2e-4	P
	GSM480184 extract 1	140.77	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	46.3323	0.004	P
	GSM480224 extract 1	27.9901	0.011	P
	GSM480226 extract 1	58.2079	7e-4	P
	GSM480227 extract 1	119.415	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	95.2675	2e-4	P
	GSM480165 extract 1	69.9306	0.003	P
	GSM480166 extract 1	88.8495	7e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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