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Expression Template: LesAffx.60898.1.S1_at

Template Basic Information

Template name:	LesAffx.60898.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U596882
External db links:	GenBank: BM535294

Annotations for unigene SGN-U596882 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|125546144\|gb\|EAY92283.1\|	187	5e-46	81.48	297 bp (51.8%)	2
Description:	hypothetical protein OsI_14005 [Oryza sativa Indica Group]
arabidopsis	blastx	At3G57520.1	184	3e-47	79.63	297 bp (51.8%)	2
Description:	Symbols: ATSIP2 \| ATSIP2 (ARABIDOPSIS THALIANA SEED IMBIBITION 2); hydrolase, hydrolyzing O-gl&hellip
swissprot	blastx	Q84VX0	163	6e-40	70.37	297 bp (51.8%)	2
Description:	Uncharacterized glycosyltransferase At1g55740 OS=Arabidopsis thaliana GN=At1g55740

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.60898.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.60898.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.60898.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.60898.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.60898.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.60898.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.60898.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.60898.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.60898.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.60898.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.60898.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	27.28	27.28	2.55	0.09
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	32.04	47.04	27.76	0.87
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	50.77	50.77	17.94	0.35
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	30.44	28.71	8.72	0.29
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	37.31	37.71	21.07	0.56
	Gene expression data from Aft red fruit peel	exocarp	3	3	32.75	30.11	7.74	0.24
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	29.64	26.22	6.02	0.20
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	30.66	32.17	3.87	0.13
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	30.61	30.10	2.09	0.07
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	43.94	43.94	5.42	0.12
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	34.18	31.76	8.08	0.24
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	46.18	46.18	12.80	0.28
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	33.92	35.62	5.47	0.16
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	23.80	23.80	7.04	0.30
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	19.92	19.92	1.20	0.06
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	28.23	24.67	6.35	0.22
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	15.04	13.32	4.36	0.29
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	44.77	38.22	11.84	0.26
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	52.11	53.34	7.30	0.14
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	44.51	41.51	10.39	0.23
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	50.38	53.82	15.63	0.31
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	38.48	39.50	4.75	0.12
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	72.59	72.59	28.41	0.39
	Gene expression data from Micro-Tom root	root	3	3	19.77	20.70	2.04	0.10

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	25.4771	0.008	P
	GSM480171 extract 1	29.0803	0.014	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1		0e+0	P
	GSM480215 extract 1	47.0361	0.008	P
	GSM480217 extract 1	49.0779	0.046	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	63.4544	0.014	P
	GSM480186 extract 1	38.0789	0.006	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	41.27	0.038	P
	GSM480225 extract 1	23.679	0.003	P
	GSM480226 extract 1	23.0691	0.014	P
	GSM480227 extract 1	33.7447	0.024	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	16.0384	0.001	P
	GSM480208 extract 1	37.7084	0.004	P
	GSM480207 extract 1	58.1701	0.022	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	30.1051	0.014	P
	GSM480209 extract 1	41.4727	0.008	P
	GSM480211 extract 1	26.677	0.024	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	26.1033	0.008	P
	GSM480220 extract 1	36.5925	0.030	P
	GSM480219 extract 1	26.2172	0.014	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	32.167	0.014	P
	GSM480222 extract 1	33.5605	0.056	M
	GSM480223 extract 1	26.2617	0.024	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	30.1032	0.150	A
	GSM480191 extract 1	32.8992	0.046	P
	GSM480192 extract 1	28.8193	0.030	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	47.7721	0.002	P
	GSM480196 extract 1	40.1037	0.003	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	31.7605	0.004	P
	GSM480199 extract 1	27.5852	0.056	M
	GSM480197 extract 1	43.2008	0.008	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	55.2248	0.011	P
	GSM480193 extract 1	37.1283	0.011	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	38.4354	0.004	P
	GSM480229 extract 1	34.895	0.001	P
	GSM480230 extract 1	26.0207	0.019	P
	GSM480231 extract 1	36.3486	0.004	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	18.8184	0.056	M
	GSM480168 extract 1	28.7746	0.024	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	19.0774	0.014	P
	GSM480172 extract 1	20.7699	0.024	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	24.6657	0.056	M
	GSM480175 extract 1	35.5655	0.046	P
	GSM480176 extract 1	24.4705	0.019	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	13.3193	0.038	P
	GSM480178 extract 1	11.8032	0.038	P
	GSM480179 extract 1	20.003	0.014	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	38.2207	0.019	P
	GSM480200 extract 1	58.4363	0.019	P
	GSM480201 extract 1	37.6638	0.019	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	58.7243	0.006	P
	GSM480204 extract 1	53.3373	0.024	P
	GSM480205 extract 1	44.2771	0.024	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	41.5106	0.056	M
	GSM480212 extract 1	56.066	0.024	P
	GSM480213 extract 1	35.9563	0.046	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	63.9995	0.019	P
	GSM480182 extract 1	33.3164	0.019	P
	GSM480180 extract 1	53.8249	0.038	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	42.6416	0.068	A
	GSM480188 extract 1	33.3131	0.006	P
	GSM480189 extract 1	39.495	0.046	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	92.6766	0.006	P
	GSM480184 extract 1	52.5039	0.008	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	17.4368	0.095	A
	GSM480166 extract 1	21.1744	0.046	P
	GSM480167 extract 1	20.7016	0.019	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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