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Expression Template: LesAffx.61749.1.S1_at

Template Basic Information

Template name:	LesAffx.61749.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U581167
External db links:	GenBank: BM412735

Annotations for unigene SGN-U581167 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|217071820\|gb\|ACJ84270.1\|	375	3e-102	71.15	759 bp (72.0%)	3
Description:	unknown [Medicago truncatula]
arabidopsis	blastx	At1G28120.1	354	4e-98	71.24	699 bp (66.3%)	3
Description:	Identical to Ubiquitin thioesterase otubain-like protein (EC 3.4.-.-) (Ubiquitin- specific-pro&hellip
swissprot	blastx	Q8LG98	354	4e-97	71.24	699 bp (66.3%)	3
Description:	Ubiquitin thioesterase otubain-like OS=Arabidopsis thaliana GN=At1g28120 PE=2 SV=2

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.61749.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.61749.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.61749.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.61749.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.61749.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.61749.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.61749.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.61749.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.61749.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.61749.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.61749.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	161.46	161.46	24.96	0.15
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	319.20	328.30	63.03	0.20
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	397.74	397.74	6.97	0.02
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	348.77	360.25	33.31	0.10
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	234.68	201.94	97.96	0.42
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	239.22	238.09	3.91	0.02
	Gene expression data from Aft red fruit peel	exocarp	3	3	350.27	355.90	20.06	0.06
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	236.53	232.25	12.64	0.05
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	265.38	265.75	20.51	0.08
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	309.67	327.00	37.99	0.12
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	403.78	403.78	27.52	0.07
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	348.32	334.36	55.25	0.16
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	450.21	450.21	39.08	0.09
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	213.69	198.11	69.52	0.33
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	271.79	271.79	15.49	0.06
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	109.00	109.00	7.14	0.07
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	160.42	161.86	26.07	0.16
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	179.99	178.63	16.86	0.09
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	310.71	311.80	10.14	0.03
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	347.97	345.21	9.63	0.03
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	256.59	262.89	34.59	0.13
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	270.40	394.06	234.46	0.87
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	378.16	378.16	66.94	0.18
	Gene expression data from Micro-Tom root	root	3	3	332.01	357.94	45.12	0.14

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	179.109	2e-4	P
	GSM480171 extract 1	143.808	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	328.299	2e-4	P
	GSM480181 extract 1	377.193	2e-4	P
	GSM480182 extract 1	252.117	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	392.806	2e-4	P
	GSM480186 extract 1	402.667	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	360.249	2e-4	P
	GSM480189 extract 1	311.239	2e-4	P
	GSM480187 extract 1	374.822	7e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	201.976	2e-4	P
	GSM480225 extract 1	156.745	7e-4	P
	GSM480227 extract 1	378.103	2e-4	P
	GSM480226 extract 1	201.912	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	243.571	2e-4	P
	GSM480206 extract 1	236.002	2e-4	P
	GSM480207 extract 1	238.089	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	355.904	7e-4	P
	GSM480211 extract 1	366.92	2e-4	P
	GSM480209 extract 1	327.996	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	232.25	7e-4	P
	GSM480219 extract 1	250.754	2e-4	P
	GSM480218 extract 1	226.581	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	244.683	2e-4	P
	GSM480223 extract 1	285.694	2e-4	P
	GSM480222 extract 1	265.752	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	335.911	2e-4	P
	GSM480190 extract 1	326.995	2e-4	P
	GSM480192 extract 1	266.112	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	423.237	7e-4	P
	GSM480196 extract 1	384.315	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	334.358	2e-4	P
	GSM480198 extract 1	301.391	2e-4	P
	GSM480197 extract 1	409.217	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	422.573	2e-4	P
	GSM480193 extract 1	477.839	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	188.711	2e-4	P
	GSM480229 extract 1	147.57	7e-4	P
	GSM480231 extract 1	310.972	2e-4	P
	GSM480230 extract 1	207.514	7e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	282.74	2e-4	P
	GSM480169 extract 1	260.835	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	103.953	2e-4	P
	GSM480173 extract 1	114.051	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	185.732	2e-4	P
	GSM480174 extract 1	133.656	2e-4	P
	GSM480175 extract 1	161.862	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	197.495	2e-4	P
	GSM480178 extract 1	178.628	2e-4	P
	GSM480179 extract 1	163.861	7e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	300.077	2e-4	P
	GSM480202 extract 1	311.8	7e-4	P
	GSM480201 extract 1	320.265	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	358.676	2e-4	P
	GSM480204 extract 1	345.211	2e-4	P
	GSM480205 extract 1	340.023	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	219.281	2e-4	P
	GSM480213 extract 1	287.586	2e-4	P
	GSM480214 extract 1	262.892	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1		0e+0	P
	GSM480215 extract 1	394.058	2e-4	P
	GSM480217 extract 1	417.154	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	425.5	2e-4	P
	GSM480183 extract 1	330.826	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	358.187	2e-4	P
	GSM480165 extract 1	357.939	2e-4	P
	GSM480166 extract 1	279.91	7e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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