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Expression Template: LesAffx.46547.1.S1_at

Template Basic Information

Template name:	LesAffx.46547.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U565232
External db links:	GenBank: BG134920

Annotations for unigene SGN-U565232 (manual: 0 | blast: 3 | go: 4 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147779009\|emb\|CAN71397.1\|	263	1e-68	79.04	501 bp (72.0%)	3
Description:	hypothetical protein [Vitis vinifera]
arabidopsis	blastx	At4G16710.2	240	5e-64	68.97	522 bp (75.0%)	3
Description:	glycosyltransferase family protein 28 \| chr4:9398840-9399640 FORWARD
swissprot	blastx	Q9NP73	130	8e-30	41.72	489 bp (70.3%)	3
Description:	UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Homo sapiens GN=ALG13 PE=1 SV=1

GO Terms Annotations

GO:0030246carbohydrate binding
GO:0005975carbohydrate metabolism
GO:0016758transferase activity, transferring hexosyl groups
GO:0030259lipid glycosylation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.46547.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.46547.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.46547.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.46547.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.46547.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.46547.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.46547.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.46547.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.46547.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.46547.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.46547.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	321.55	321.55	39.44	0.12
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	519.46	482.04	107.68	0.21
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	91.36	92.40	9.36	0.10
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	225.83	226.74	97.05	0.43
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	238.80	238.80	95.08	0.40
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	376.03	372.11	10.99	0.03
	Gene expression data from Aft red fruit peel	exocarp	3	3	327.99	310.28	45.96	0.14
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	458.91	467.03	29.52	0.06
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	276.95	276.51	23.54	0.09
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	176.02	178.53	39.45	0.22
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	301.07	301.07	73.15	0.24
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	323.83	345.96	71.44	0.22
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	294.89	294.89	5.84	0.02
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	182.21	170.64	39.40	0.22
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	322.59	322.59	26.50	0.08
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	226.26	226.26	52.67	0.23
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	205.39	207.05	31.13	0.15
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	102.99	92.76	22.13	0.21
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	283.51	300.53	40.93	0.14
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	558.65	559.05	4.50	0.01
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	194.33	177.88	71.60	0.37
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	325.54	325.54	67.15	0.21
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	197.42	173.47	92.69	0.47
	Gene expression data from Micro-Tom root	root	3	3	118.23	124.74	37.89	0.32

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	349.437	0.002	P
	GSM480171 extract 1	293.663	0.002	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	482.039	7e-4	P
	GSM480202 extract 1	640.861	2e-4	P
	GSM480200 extract 1	435.489	7e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	100.151	0.002	P
	GSM480215 extract 1	92.4023	0.002	P
	GSM480217 extract 1	81.5273	0.004	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	128.318	0.004	P
	GSM480182 extract 1	322.419	2e-4	P
	GSM480180 extract 1	226.74	7e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	171.569	0.001	P
	GSM480186 extract 1	306.033	0.001	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	372.108	0.001	P
	GSM480207 extract 1	367.529	7e-4	P
	GSM480208 extract 1	388.44	7e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	380.18	0.001	P
	GSM480211 extract 1	293.523	7e-4	P
	GSM480209 extract 1	310.276	0.004	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	467.026	0.003	P
	GSM480220 extract 1	426.174	0.002	P
	GSM480219 extract 1	483.525	0.001	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	300.715	7e-4	P
	GSM480221 extract 1	253.633	0.004	P
	GSM480223 extract 1	276.507	7e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	178.529	0.003	P
	GSM480191 extract 1	135.38	2e-4	P
	GSM480192 extract 1	214.159	0.001	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	249.343	2e-4	P
	GSM480196 extract 1	352.795	0.002	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	345.964	0.002	P
	GSM480198 extract 1	243.945	7e-4	P
	GSM480199 extract 1	381.577	7e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	299.019	7e-4	P
	GSM480194 extract 1	290.766	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	186.317	0.008	P
	GSM480230 extract 1	154.961	0.001	P
	GSM480231 extract 1	236.387	2e-4	P
	GSM480228 extract 1	151.189	0.002	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	303.846	0.003	P
	GSM480169 extract 1	341.325	7e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	263.501	0.002	P
	GSM480173 extract 1	189.017	7e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	235.66	2e-4	P
	GSM480174 extract 1	173.472	0.002	P
	GSM480175 extract 1	207.048	0.002	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	92.7575	0.006	P
	GSM480178 extract 1	87.8269	0.003	P
	GSM480179 extract 1	128.386	0.006	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	300.527	0.002	P
	GSM480204 extract 1	236.816	7e-4	P
	GSM480205 extract 1	313.176	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	553.959	0.001	P
	GSM480214 extract 1	562.935	0.002	P
	GSM480213 extract 1	559.048	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	177.878	0.001	P
	GSM480187 extract 1	132.382	0.001	P
	GSM480188 extract 1	272.72	0.003	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	278.056	0.002	P
	GSM480184 extract 1	373.026	7e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	116.694	0.001	P
	GSM480225 extract 1	201.433	0.006	P
	GSM480226 extract 1	145.507	0.003	P
	GSM480227 extract 1	326.055	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	77.51	0.008	P
	GSM480166 extract 1	124.743	0.003	P
	GSM480167 extract 1	152.437	0.002	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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