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Expression Template: LesAffx.56734.1.S1_at

Template Basic Information

Template name:	LesAffx.56734.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U566921 SGN-U566921 SGN-U566921
External db links:	GenBank: AW032753

Annotations for unigene SGN-U566921 (manual: 2 | blast: 3 | go: 2 )

Manual annotations

Based on clone cLEX-11-A17, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "phospho-2-dehydro-3-deoxyheptonate aldolase 1, DAHP synthase" Annotation Keywords: other; enzyme; aldolase

Blast Annotations [Show All]

Database	Program	Best Match	Score	Identity	Alignment Length	Frame
genbank	blastx	gi\|584778\|sp\|P37216\|AROG_SOLLC	975	100	1533 bp (78.4%)	2
Description:	Phospho-2-dehydro-3-deoxyheptonate
arabidopsis	blastx	At1G22410.1	823	88.86	1347 bp (68.9%)	2
Description:	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosp&hellip
swissprot	blastx	P37216	975	100	1533 bp (78.4%)	2
Description:	Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum lycopersicum PE=2 SV=1

GO Terms Annotations

GO:0009073aromatic amino acid family biosynthesis
GO:00038493-deoxy-7-phosphoheptulonate synthase activity

Annotations for unigene SGN-U566921 (manual: 2 | blast: 3 | go: 2 )

Manual annotations

Based on clone cLEX-11-A17, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "phospho-2-dehydro-3-deoxyheptonate aldolase 1, DAHP synthase" Annotation Keywords: other; enzyme; aldolase

Blast Annotations [Show All]

Database	Program	Best Match	Score	Identity	Alignment Length	Frame
genbank	blastx	gi\|584778\|sp\|P37216\|AROG_SOLLC	975	100	1533 bp (78.4%)	2
Description:	Phospho-2-dehydro-3-deoxyheptonate
arabidopsis	blastx	At1G22410.1	823	88.86	1347 bp (68.9%)	2
Description:	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosp&hellip
swissprot	blastx	P37216	975	100	1533 bp (78.4%)	2
Description:	Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum lycopersicum PE=2 SV=1

GO Terms Annotations

GO:0009073aromatic amino acid family biosynthesis
GO:00038493-deoxy-7-phosphoheptulonate synthase activity

Annotations for unigene SGN-U566921 (manual: 2 | blast: 3 | go: 2 )

Manual annotations

Based on clone cLEX-11-A17, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "phospho-2-dehydro-3-deoxyheptonate aldolase 1, DAHP synthase" Annotation Keywords: other; enzyme; aldolase

Blast Annotations [Show All]

Database	Program	Best Match	Score	Identity	Alignment Length	Frame
genbank	blastx	gi\|584778\|sp\|P37216\|AROG_SOLLC	975	100	1533 bp (78.4%)	2
Description:	Phospho-2-dehydro-3-deoxyheptonate
arabidopsis	blastx	At1G22410.1	823	88.86	1347 bp (68.9%)	2
Description:	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosp&hellip
swissprot	blastx	P37216	975	100	1533 bp (78.4%)	2
Description:	Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum lycopersicum PE=2 SV=1

GO Terms Annotations

GO:0009073aromatic amino acid family biosynthesis
GO:00038493-deoxy-7-phosphoheptulonate synthase activity

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.56734.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.56734.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.56734.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.56734.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.56734.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.56734.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.56734.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.56734.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.56734.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.56734.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.56734.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	22.28	22.28	2.61	0.12
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	3.37	2.88	1.60	0.47
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	0.79	0.78	0.28	0.35
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	7.62	6.45	3.32	0.43
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	2.75	2.12	1.63	0.59
	Gene expression data from Aft red fruit peel	exocarp	3	3	9.58	6.91	6.63	0.69
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	3.52	1.15	4.41	1.25
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	4.52	3.90	2.82	0.62
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	2.20	1.05	2.01	0.91
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1.29	1.29	0.85	0.66
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	3.09	1.51	2.92	0.95
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1.71	1.71	0.66	0.39
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	1.09	0.89	0.52	0.48
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	4.05	4.05	0.44	0.11
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	13.42	13.42	3.31	0.25
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	32.93	33.26	10.39	0.32
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	16.15	17.69	11.97	0.74
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	6.73	6.75	0.18	0.03
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	8.60	9.27	2.81	0.33
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	2.29	1.91	0.76	0.33
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	3.63	3.73	2.29	0.63
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	3.07	3.07	2.98	0.97
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	8.10	8.10	3.74	0.46
	Gene expression data from Micro-Tom root	root	3	3	219.68	225.26	16.54	0.08

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	24.1267	0.019	P
	GSM480171 extract 1	20.4309	0.019	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	2.88382	0.754	A
	GSM480214 extract 1	5.1536	0.366	A
	GSM480213 extract 1	2.0708	0.696	A
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	1.07572	0.634	A
	GSM480188 extract 1	0.525616	0.719	A
	GSM480187 extract 1	0.775407	0.805	A
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	12.4119	0.274	A
	GSM480227 extract 1	5.18845	0.246	A
	GSM480225 extract 1	7.26963	0.466	A
	GSM480226 extract 1	5.62255	0.466	A
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	2.11954	0.534	A
	GSM480207 extract 1	4.60136	0.568	A
	GSM480208 extract 1	1.53221	0.634	A
Gene expression data from Aft red fruit peel	GSM480211 extract 1	4.70091	0.399	A
	GSM480210 extract 1	17.1227	0.038	P
	GSM480209 extract 1	6.91337	0.171	A
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	1.15008	0.850	A
	GSM480218 extract 1	0.810547	0.726	A
	GSM480219 extract 1	8.61434	0.399	A
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	7.59551	0.466	A
	GSM480223 extract 1	3.89737	0.500	A
	GSM480221 extract 1	2.05928	0.534	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	4.51397	0.568	A
	GSM480192 extract 1	1.05395	0.696	A
	GSM480191 extract 1	1.01889	0.781	A
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	1.89256	0.754	A
	GSM480195 extract 1	0.690346	0.919	A
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	6.46321	0.246	A
	GSM480198 extract 1	1.29276	0.666	A
	GSM480199 extract 1	1.51201	0.666	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	2.17834	0.696	A
	GSM480194 extract 1	1.23897	0.696	A
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	0.723784	0.888	A
	GSM480231 extract 1	0.840378	0.829	A
	GSM480229 extract 1	1.8623	0.634	A
	GSM480230 extract 1	0.938663	0.781	A
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	3.73958	0.424	A
	GSM480169 extract 1	4.36238	0.666	A
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	15.7664	0.095	A
	GSM480173 extract 1	11.0798	0.150	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	43.1627	0.046	P
	GSM480175 extract 1	33.2577	0.019	P
	GSM480176 extract 1	22.3834	0.068	A
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	27.2667	0.056	M
	GSM480177 extract 1	3.47858	0.432	A
	GSM480178 extract 1	17.694	0.068	A
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	6.74646	0.399	A
	GSM480200 extract 1	6.53495	0.500	A
	GSM480201 extract 1	6.89544	0.366	A
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	11.0095	0.095	A
	GSM480205 extract 1	5.50422	0.334	A
	GSM480203 extract 1	9.27292	0.500	A
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	1.79927	0.696	A
	GSM480215 extract 1	1.91045	0.304	A
	GSM480217 extract 1	3.16892	0.601	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	1.28995	0.850	A
	GSM480180 extract 1	3.72987	0.696	A
	GSM480182 extract 1	5.87029	0.466	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	0.960469	0.805	A
	GSM480186 extract 1	5.17649	0.399	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	10.7489	0.304	A
	GSM480183 extract 1	5.45598	0.568	A
Gene expression data from Micro-Tom root	GSM480167 extract 1	225.256	0.001	P
	GSM480166 extract 1	232.709	0.001	P
	GSM480165 extract 1	201.076	0.002	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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