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Expression Template: BP133101_at

Template Basic Information

Template name:	BP133101_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U445235
External db links:	GenBank: BP133101

Annotations for unigene SGN-U445235 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	Identity	Alignment Length	Frame
genbank	blastx	gi\|83284007\|gb\|ABC01911.1\|	771	97.78	1215 bp (76.0%)	1
Description:	succinyl CoA ligase beta subunit-like protein [Solanum tuberosum]
arabidopsis	blastx	At2G20420.1	699	86.63	1212 bp (75.8%)	1
Description:	succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetas&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
BP133101_at_probe_01	PM	data not available	data not available	1
BP133101_at_probe_02	PM	data not available	data not available	1
BP133101_at_probe_03	PM	data not available	data not available	1
BP133101_at_probe_04	PM	data not available	data not available	1
BP133101_at_probe_05	PM	data not available	data not available	1
BP133101_at_probe_06	PM	data not available	data not available	1
BP133101_at_probe_07	PM	data not available	data not available	1
BP133101_at_probe_08	PM	data not available	data not available	1
BP133101_at_probe_09	PM	data not available	data not available	1
BP133101_at_probe_10	PM	data not available	data not available	1
BP133101_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	6.73	6.68	0.59	0.09
	TobEA vegetative shoot apex	shoot apex	8	8	6.72	6.73	0.87	0.13
	TobEA closed bud	flower bud	5	5	6.89	7.03	0.38	0.06
	TobEA open bud	flower bud	5	5	6.90	6.90	0.30	0.04
	TobEA cotyledons	cotyledon	5	5	6.98	6.94	0.45	0.06
	TobEA flower	flower	5	5	6.74	6.91	0.48	0.07
	TobEA lower stem	stem internode	5	5	6.89	7.06	0.40	0.06
	TobEA upper stem	stem internode	5	5	6.95	6.95	0.48	0.07
	TobEA cauline leaf	cauline leaf	5	5	6.84	6.96	0.27	0.04
	TobEA early senescent leaf	adult vascular leaf	5	5	6.70	6.78	0.47	0.07
	TobEA late senescent leaf	adult vascular leaf	5	5	6.70	6.68	0.30	0.05
	TobEA mature leaf	adult vascular leaf	5	5	6.69	6.75	0.26	0.04
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	6.59	6.76	0.34	0.05
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	6.63	6.54	0.21	0.03
	TobEA young leaf	juvenile vascular leaf	5	5	6.96	7.06	0.31	0.04
	TobEA mature root	root	5	5	7.01	7.11	0.25	0.04
	TobEA young root	root	6	6	7.44	7.42	0.15	0.02
	TobEA seed	seed	6	6	8.01	8.02	0.30	0.04
	TobEA young shoot	shoot system	5	5	7.33	7.34	0.16	0.02

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 144.CEL	7.059234	0.001	P
	Atlas 143.CEL	7.5173907	0.004	P
	Atlas 147.CEL	6.3768916	2e-4	P
	Atlas 145.CEL	6.682346	0.006	P
	Atlas 146.CEL	6.009523	0.003	P
TobEA vegetative shoot apex	Atlas 246.CEL	6.7902513	0.001	P
	Atlas 247.CEL	6.497528	0.001	P
	Atlas 248.CEL	6.1965466	0.002	P
	Atlas 58.CEL	7.8972087	0.002	P
	Atlas 249.CEL	5.0661235	2e-4	P
	Atlas 59.CEL	7.065364	0.006	P
	Atlas 250.CEL	6.672049	0.002	P
	Atlas 61.CEL	7.592545	0.002	P
TobEA closed bud	Atlas 195.CEL	6.2914953	7e-4	P
	Atlas 199.CEL	6.724184	0.002	P
	Atlas 163.CEL	7.0319123	0.014	P
	Atlas 173.CEL	7.1822047	7e-4	P
	Atlas 161.CEL	7.2037253	0.002	P
TobEA open bud	Atlas 159.CEL	6.919631	0.008	P
	Atlas 169.CEL	6.794765	7e-4	P
	Atlas 167.CEL	6.899109	0.011	P
	Atlas 171.CEL	6.521591	0.004	P
	Atlas 244.CEL	7.340798	0.006	P
TobEA cotyledons	Atlas 70.CEL	6.9432507	0.011	P
	Atlas 69.CEL	6.8192368	0.014	P
	Atlas 74.CEL	6.3887935	0.006	P
	Atlas 75.CEL	7.6342974	2e-4	P
	Atlas 71.CEL	7.1130123	0.011	P
TobEA flower	Atlas 197.CEL	6.0055447	2e-4	P
	Atlas 158.CEL	6.909693	0.006	P
	Atlas 165.CEL	7.0010867	0.004	P
	Atlas 198.CEL	6.5364733	0.004	P
	Atlas 166.CEL	7.2428823	0.006	P
TobEA lower stem	Atlas 164.CEL	7.0586495	0.004	P
	Atlas 172.CEL	6.7135024	7e-4	P
	Atlas 200.CEL	7.134792	7e-4	P
	Atlas 245.CEL	6.279845	0.004	P
	Atlas 174.CEL	7.257963	0.004	P
TobEA upper stem	Atlas 196.CEL	7.072654	0.004	P
	Atlas 160.CEL	6.954685	0.002	P
	Atlas 168.CEL	6.786807	2e-4	P
	Atlas 162.CEL	7.629735	0.004	P
	Atlas 170.CEL	6.313895	0.008	P
TobEA cauline leaf	Atlas 235.CEL	6.388742	0.001	P
	Atlas 229.CEL	6.8310413	0.004	P
	Atlas 231.CEL	6.9635825	0.006	P
	Atlas 233.CEL	6.963944	0.004	P
	Atlas 237.CEL	7.076045	0.003	P
TobEA early senescent leaf	Atlas 187.CEL	6.776168	0.024	P
	Atlas 191.CEL	5.9348655	0.130	A
	Atlas 182.CEL	7.049354	0.004	P
	Atlas 175.CEL	7.0852365	0.008	P
	Atlas 183.CEL	6.6395774	0.056	M
TobEA late senescent leaf	Atlas 190.CEL	6.6790423	0.006	P
	Atlas 194.CEL	6.329655	0.001	P
	Atlas 179.CEL	6.945689	0.002	P
	Atlas 186.CEL	6.5095177	0.004	P
	Atlas 178.CEL	7.0606103	0.011	P
TobEA mature leaf	Atlas 93.CEL	6.2754936	0.011	P
	Atlas 97.CEL	6.894616	0.014	P
	Atlas 94.CEL	6.9021997	0.008	P
	Atlas 95.CEL	6.752757	0.006	P
	Atlas 96.CEL	6.62987	0.004	P
TobEA mid/early senescent leaf	Atlas 176.CEL	6.7577996	2e-4	P
	Atlas 188.CEL	6.8320646	0.002	P
	Atlas 181.CEL	6.8599024	0.008	P
	Atlas 184.CEL	6.429253	0.046	P
	Atlas 192.CEL	6.0603447	0.011	P
TobEA mid/late senescent leaf	Atlas 193.CEL	6.4376373	0.008	P
	Atlas 180.CEL	6.5371757	0.001	P
	Atlas 189.CEL	6.9792566	2e-4	P
	Atlas 177.CEL	6.644079	0.002	P
	Atlas 185.CEL	6.537591	0.038	P
TobEA young leaf	Atlas 53.CEL	7.2040143	7e-4	P
	Atlas 55.CEL	7.0577235	0.002	P
	Atlas 54.CEL	7.115739	0.004	P
	Atlas 56.CEL	6.418477	0.003	P
	Atlas 57.CEL	6.9887404	0.008	P
TobEA mature root	Atlas 64.CEL	6.616901	0.003	P
	Atlas 65.CEL	6.8965826	7e-4	P
	Atlas 63.CEL	7.1776752	0.003	P
	Atlas 66.CEL	7.1096783	0.002	P
	Atlas 67.CEL	7.2347937	0.011	P
TobEA young root	Atlas 39.CEL	7.4006453	0.006	P
	Atlas 40.CEL	7.2645483	0.004	P
	Atlas 43.CEL	7.4455986	0.004	P
	Atlas 41.CEL	7.4868546	0.008	P
	Atlas 44.CEL	7.703165	7e-4	P
	Atlas 42.CEL	7.329134	7e-4	P
TobEA seed	Atlas 76.CEL	7.805281	0.003	P
	Atlas 78.CEL	7.958635	0.002	P
	Atlas 79.CEL	7.578819	2e-4	P
	Atlas 98.CEL	8.410456	0.006	P
	Atlas 77.CEL	8.215491	0.008	P
	Atlas 99.CEL	8.084863	0.001	P
TobEA young shoot	Atlas 86.CEL	7.2157907	0.008	P
	Atlas 88.CEL	7.156728	0.003	P
	Atlas 89.CEL	7.3382697	0.006	P
	Atlas 87.CEL	7.380991	0.006	P
	Atlas 90.CEL	7.559196	7e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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