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Expression Template: LesAffx.286.3.S1_a_at

Template Basic Information

Template name:	LesAffx.286.3.S1_a_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U578696
External db links:	GenBank: BE435725

Annotations for unigene SGN-U578696 (manual: 0 | blast: 3 | go: 2 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|217072906\|gb\|ACJ84813.1\|	388	7e-106	66.67	876 bp (66.7%)	3
Description:	unknown [Medicago truncatula]
arabidopsis	blastx	At4G02860.1	336	2e-92	58.5	870 bp (66.3%)	3
Description:	catalytic \| chr4:1268952-1270508 REVERSE
swissprot	blastx	Q9KG32	209	3e-53	43.51	849 bp (64.7%)	3
Description:	Uncharacterized isomerase BH0283 OS=Bacillus halodurans GN=BH0283 PE=3 SV=1

GO Terms Annotations

GO:0003824catalytic activity
GO:0009058biosynthesis

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.286.3.S1_a_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.286.3.S1_a_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.286.3.S1_a_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.286.3.S1_a_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.286.3.S1_a_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.286.3.S1_a_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.286.3.S1_a_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.286.3.S1_a_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.286.3.S1_a_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.286.3.S1_a_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.286.3.S1_a_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	204.49	204.49	21.60	0.11
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	798.56	802.46	59.36	0.07
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	1513.67	1691.36	696.43	0.46
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	360.79	392.72	72.35	0.20
	Gene expression data from Aft red fruit peel	exocarp	3	3	6300.92	6053.04	577.28	0.09
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	408.88	397.03	65.56	0.16
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	4478.23	5030.62	1035.28	0.23
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	1125.14	1390.64	695.67	0.62
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	3525.88	3525.88	116.98	0.03
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	2855.44	2669.83	1177.43	0.41
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	3456.46	3456.46	22.54	0.01
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	2866.12	2028.76	1886.63	0.66
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	362.09	362.09	7.26	0.02
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	324.35	324.35	8.36	0.03
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	422.47	344.72	149.78	0.35
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	499.22	502.98	16.42	0.03
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	634.96	668.33	98.68	0.16
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	3678.38	3678.88	213.37	0.06
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	3651.85	3667.01	314.84	0.09
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	2184.32	2184.32	690.44	0.32
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	3551.36	3553.99	231.50	0.07
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	2774.14	2774.14	690.91	0.25
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	2662.89	1971.85	1677.61	0.63
	Gene expression data from Micro-Tom root	root	3	3	1281.36	1353.76	155.23	0.12

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	189.224	2e-4	P
	GSM480171 extract 1	219.765	7e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	802.461	2e-4	P
	GSM480213 extract 1	855.867	2e-4	P
	GSM480214 extract 1	737.339	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	745.61	2e-4	P
	GSM480181 extract 1	2104.05	2e-4	P
	GSM480182 extract 1	1691.36	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	392.715	2e-4	P
	GSM480207 extract 1	277.967	2e-4	P
	GSM480206 extract 1	411.675	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	6053.04	2e-4	P
	GSM480210 extract 1	6960.74	2e-4	P
	GSM480211 extract 1	5888.99	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	350.048	2e-4	P
	GSM480219 extract 1	397.031	2e-4	P
	GSM480220 extract 1	479.556	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	5030.62	2e-4	P
	GSM480222 extract 1	3283.91	2e-4	P
	GSM480223 extract 1	5120.16	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	1648.96	2e-4	P
	GSM480190 extract 1	335.815	2e-4	P
	GSM480192 extract 1	1390.64	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	3443.16	2e-4	P
	GSM480196 extract 1	3608.6	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	1781.84	2e-4	P
	GSM480199 extract 1	2669.83	2e-4	P
	GSM480197 extract 1	4114.66	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	3472.4	2e-4	P
	GSM480194 extract 1	3440.52	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	1853.4	2e-4	P
	GSM480228 extract 1	2204.13	2e-4	P
	GSM480231 extract 1	5679.83	2e-4	P
	GSM480229 extract 1	1727.1	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	367.226	2e-4	P
	GSM480168 extract 1	356.954	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	318.436	2e-4	P
	GSM480173 extract 1	330.26	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	327.562	2e-4	P
	GSM480175 extract 1	344.716	2e-4	P
	GSM480176 extract 1	595.133	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	513.439	2e-4	P
	GSM480179 extract 1	481.243	2e-4	P
	GSM480177 extract 1	502.984	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	668.332	2e-4	P
	GSM480201 extract 1	712.632	2e-4	P
	GSM480202 extract 1	523.927	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	3464.76	2e-4	P
	GSM480204 extract 1	3678.88	2e-4	P
	GSM480205 extract 1	3891.49	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	3667.01	2e-4	P
	GSM480216 extract 1	3329.7	2e-4	P
	GSM480217 extract 1	3958.83	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	1696.11	2e-4	P
	GSM480186 extract 1	2672.54	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	3318.56	2e-4	P
	GSM480189 extract 1	3781.53	2e-4	P
	GSM480187 extract 1	3553.99	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	2285.6	2e-4	P
	GSM480184 extract 1	3262.69	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	1643.68	2e-4	P
	GSM480227 extract 1	5131.23	2e-4	P
	GSM480224 extract 1	2300.02	2e-4	P
	GSM480225 extract 1	1576.64	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	1387.17	2e-4	P
	GSM480166 extract 1	1103.16	2e-4	P
	GSM480167 extract 1	1353.76	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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