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Expression Template: Les.4902.1.A1_at

Template Basic Information

Template name:	Les.4902.1.A1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U577421
External db links:	GenBank: BT012867.1

Annotations for unigene SGN-U577421 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|56393011\|gb\|AAV87156.1\|	524	5e-147	99.62	795 bp (65.9%)	2
Description:	MKS1 [Lycopersicon hirsutum f. glabratum]
arabidopsis	blastx	At2G23610.1	213	1e-55	45.74	765 bp (63.4%)	2
Description:	esterase, putative \| chr2:10051490-10053483 REVERSE
swissprot	blastx	Q9SE93	221	5e-57	44.71	759 bp (62.9%)	2
Description:	Polyneuridine-aldehyde esterase OS=Rauvolfia serpentina GN=PNAE PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4902.1.A1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4902.1.A1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4902.1.A1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4902.1.A1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4902.1.A1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4902.1.A1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4902.1.A1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4902.1.A1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4902.1.A1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4902.1.A1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4902.1.A1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	5.61	5.61	7.40	1.32
	Gene expression data from Aft red fruit flesh	endocarp	3	3	1.32	0.42	1.63	1.23
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	3.85	3.76	1.26	0.33
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	4.85	3.30	5.40	1.11
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	2.79	2.70	1.98	0.71
	Gene expression data from Aft red fruit peel	exocarp	3	3	2.65	0.55	3.95	1.49
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1.17	0.52	1.35	1.15
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	2.41	1.53	1.57	0.65
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	2.81	2.30	1.72	0.61
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	7.14	7.14	0.01	0.00
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	2.60	2.48	2.19	0.84
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	2.44	2.44	0.94	0.39
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	1.09	0.92	0.65	0.60
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	0.43	0.43	0.30	0.70
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	1.43	1.43	1.08	0.76
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	4.35	4.95	1.21	0.28
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	5.65	5.49	2.30	0.41
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	1.56	2.02	0.87	0.56
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	0.59	0.60	0.22	0.36
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	4.09	0.44	6.39	1.56
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	3.72	1.42	4.85	1.30
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	1.14	1.14	1.24	1.09
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	0.87	0.87	0.23	0.27
	Gene expression data from Micro-Tom root	root	3	3	4.99	4.70	1.66	0.33

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	10.8454	0.304	A
	GSM480170 extract 1	0.384036	0.726	A
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	3.20978	0.399	A
	GSM480203 extract 1	0.418566	0.850	A
	GSM480204 extract 1	0.34479	0.696	A
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	3.75798	0.634	A
	GSM480189 extract 1	2.62977	0.634	A
	GSM480187 extract 1	5.15294	0.666	A
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	0.508004	0.870	A
	GSM480227 extract 1	1.25296	0.850	A
	GSM480225 extract 1	12.2935	0.593	A
	GSM480226 extract 1	5.3392	0.500	A
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	2.69667	0.274	A
	GSM480207 extract 1	0.852342	0.805	A
	GSM480208 extract 1	4.80681	0.534	A
Gene expression data from Aft red fruit peel	GSM480209 extract 1	7.20735	0.304	A
	GSM480210 extract 1	0.546699	0.726	A
	GSM480211 extract 1	0.200087	0.870	A
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	0.270718	0.996	A
	GSM480219 extract 1	0.524498	0.726	A
	GSM480220 extract 1	2.7296	0.634	A
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	1.53261	0.634	A
	GSM480221 extract 1	1.4693	0.634	A
	GSM480222 extract 1	4.22585	0.634	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	2.30299	0.296	A
	GSM480190 extract 1	1.4037	0.726	A
	GSM480191 extract 1	4.73235	0.432	A
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	7.13477	0.046	P
	GSM480195 extract 1	7.14193	0.150	A
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	0.476882	0.970	A
	GSM480198 extract 1	2.47841	0.500	A
	GSM480199 extract 1	4.8576	0.366	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	3.10495	0.500	A
	GSM480194 extract 1	1.77466	0.246	A
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	1.99262	0.568	A
	GSM480229 extract 1	0.527943	0.754	A
	GSM480231 extract 1	0.701878	0.781	A
	GSM480230 extract 1	1.13725	0.944	A
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	0.217189	0.970	A
	GSM480168 extract 1	0.64183	0.432	A
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	0.662249	0.919	A
	GSM480172 extract 1	2.1946	0.634	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	2.95752	0.696	A
	GSM480176 extract 1	4.95269	0.274	A
	GSM480174 extract 1	5.14225	0.500	A
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	5.49142	0.219	A
	GSM480178 extract 1	3.43554	0.534	A
	GSM480179 extract 1	8.02419	0.195	A
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	2.01834	0.850	A
	GSM480201 extract 1	0.554189	0.888	A
	GSM480202 extract 1	2.097	0.304	A
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	0.375356	0.805	A
	GSM480214 extract 1	0.60004	0.829	A
	GSM480212 extract 1	0.807608	0.829	A
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	11.4646	0.399	A
	GSM480215 extract 1	0.368055	0.992	A
	GSM480216 extract 1	0.438278	0.726	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	0.454092	0.944	A
	GSM480180 extract 1	1.41696	0.696	A
	GSM480182 extract 1	9.2986	0.112	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	2.01462	0.781	A
	GSM480186 extract 1	0.26117	0.996	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	0.701525	0.754	A
	GSM480183 extract 1	1.03307	0.754	A
Gene expression data from Micro-Tom root	GSM480165 extract 1	3.49523	0.432	A
	GSM480167 extract 1	4.69707	0.666	A
	GSM480166 extract 1	6.78358	0.304	A

Correlation analysis (0)

No correlation analysis was found associated to this template

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