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Expression Template: Les.321.1.S1_at

Template Basic Information

Template name:	Les.321.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U580048
External db links:	GenBank: AY368906.1

Annotations for unigene SGN-U580048 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLET-1-L22, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: heat shock protein 80 Annotation Keywords: stress responses; temperature stress; heat stress; heat shock protein

Blast Annotations [Show All]

Database	Program	Best Match	Score	Identity	Alignment Length	Frame
genbank	blastx	gi\|38154489\|gb\|AAR12195.1\|	1164	100	2097 bp (86.0%)	2
Description:	molecular chaperone Hsp90-1 [Solanum lycopersicum]
arabidopsis	blastx	At5G56030.1	1097	93.43	2097 bp (86.0%)	2
Description:	Symbols: ERD8, HSP81-2 \| HSP81-2 (EARLY-RESPONSIVE TO DEHYDRATION 8); ATP binding \| chr5:22704&hellip
swissprot	blastx	P36181	1135	95.99	2097 bp (86.0%)	2
Description:	Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.321.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.321.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.321.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.321.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.321.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.321.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.321.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.321.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.321.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.321.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.321.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	599.55	599.55	26.15	0.04
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	1518.87	1550.70	59.05	0.04
	Gene expression data from Aft red fruit flesh	endocarp	3	3	1365.06	1388.01	72.20	0.05
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	1449.97	1458.79	50.28	0.03
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	1400.87	1388.19	27.79	0.02
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	1419.47	1419.47	36.13	0.03
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	2816.30	2498.42	826.10	0.29
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	1629.80	1629.80	292.42	0.18
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	802.62	687.78	258.38	0.32
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	1361.24	1348.83	37.06	0.03
	Gene expression data from Aft red fruit peel	exocarp	3	3	1376.76	1398.97	46.15	0.03
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1256.37	1272.95	72.79	0.06
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	1329.84	1317.26	32.38	0.02
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	2141.26	1973.75	462.99	0.22
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1488.90	1488.90	164.24	0.11
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	2340.24	2119.18	479.45	0.20
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1866.60	1866.60	109.34	0.06
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	991.78	1010.94	69.20	0.07
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1185.04	1185.04	193.01	0.16
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	1404.62	1404.62	10.77	0.01
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	1947.32	2112.63	410.93	0.21
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	2016.75	1980.80	290.72	0.14
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	1394.46	1342.19	254.02	0.18
	Gene expression data from Micro-Tom root	root	3	3	2168.36	2187.42	122.42	0.06

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	581.064	2e-4	P
	GSM480171 extract 1	618.044	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	1450.74	2e-4	P
	GSM480201 extract 1	1555.18	2e-4	P
	GSM480202 extract 1	1550.7	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	1388.01	2e-4	P
	GSM480205 extract 1	1422.99	2e-4	P
	GSM480203 extract 1	1284.17	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	1495.26	2e-4	P
	GSM480212 extract 1	1458.79	2e-4	P
	GSM480213 extract 1	1395.87	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	1381.69	2e-4	P
	GSM480217 extract 1	1388.19	2e-4	P
	GSM480215 extract 1	1432.74	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	1393.92	2e-4	P
	GSM480185 extract 1	1445.02	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	2498.42	2e-4	P
	GSM480187 extract 1	3754.13	2e-4	P
	GSM480188 extract 1	2196.36	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	1836.57	2e-4	P
	GSM480184 extract 1	1423.03	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	702.767	2e-4	P
	GSM480227 extract 1	1188.65	2e-4	P
	GSM480225 extract 1	646.268	2e-4	P
	GSM480224 extract 1	672.803	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	1331.98	2e-4	P
	GSM480207 extract 1	1402.92	2e-4	P
	GSM480208 extract 1	1348.83	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	1407.61	2e-4	P
	GSM480209 extract 1	1323.71	2e-4	P
	GSM480211 extract 1	1398.97	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	1272.95	2e-4	P
	GSM480219 extract 1	1319.44	2e-4	P
	GSM480220 extract 1	1176.72	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	1317.26	2e-4	P
	GSM480221 extract 1	1366.62	2e-4	P
	GSM480223 extract 1	1305.64	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	2664.69	2e-4	P
	GSM480190 extract 1	1973.75	2e-4	P
	GSM480191 extract 1	1785.35	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	1605.04	2e-4	P
	GSM480195 extract 1	1372.77	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	2890.34	2e-4	P
	GSM480198 extract 1	2011.19	2e-4	P
	GSM480199 extract 1	2119.18	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	1789.29	2e-4	P
	GSM480194 extract 1	1943.92	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	1013.95	2e-4	P
	GSM480230 extract 1	892.378	2e-4	P
	GSM480231 extract 1	1007.92	2e-4	P
	GSM480228 extract 1	1052.88	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	1321.52	2e-4	P
	GSM480169 extract 1	1048.56	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	1397.01	2e-4	P
	GSM480173 extract 1	1412.24	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	2249.86	2e-4	P
	GSM480174 extract 1	2112.63	2e-4	P
	GSM480176 extract 1	1479.48	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	2323.77	2e-4	P
	GSM480179 extract 1	1745.68	2e-4	P
	GSM480177 extract 1	1980.8	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	1670.55	2e-4	P
	GSM480180 extract 1	1342.19	2e-4	P
	GSM480181 extract 1	1170.64	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	2187.42	2e-4	P
	GSM480166 extract 1	2037.53	2e-4	P
	GSM480167 extract 1	2280.14	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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