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Expression Template: TT34_H24_at

Template Basic Information

Template name:	TT34_H24_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U429452
External db links:	data not available

Annotations for unigene SGN-U429452 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157346836\|emb\|CAO17075.1\|	247	2e-63	50.2	735 bp (53.6%)	-3
Description:	unnamed
arabidopsis	blastx	At5G37930.1	193	2e-49	38.55	738 bp (53.8%)	-3
Description:	seven in absentia (SINA) family protein \| chr5:15119469-15120881 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
TT34_H24_at_probe_01	PM	data not available	data not available	1
TT34_H24_at_probe_02	PM	data not available	data not available	1
TT34_H24_at_probe_03	PM	data not available	data not available	1
TT34_H24_at_probe_04	PM	data not available	data not available	1
TT34_H24_at_probe_05	PM	data not available	data not available	1
TT34_H24_at_probe_06	PM	data not available	data not available	1
TT34_H24_at_probe_07	PM	data not available	data not available	1
TT34_H24_at_probe_08	PM	data not available	data not available	1
TT34_H24_at_probe_09	PM	data not available	data not available	1
TT34_H24_at_probe_10	PM	data not available	data not available	1
TT34_H24_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	10.29	10.33	0.11	0.01
	TobEA vegetative shoot apex	shoot apex	8	8	10.37	10.26	0.18	0.02
	TobEA closed bud	flower bud	5	5	10.10	10.15	0.12	0.01
	TobEA open bud	flower bud	5	5	10.07	10.07	0.20	0.02
	TobEA cotyledons	cotyledon	5	5	9.91	9.86	0.17	0.02
	TobEA flower	flower	5	5	10.44	10.54	0.26	0.02
	TobEA lower stem	stem internode	5	5	10.41	10.39	0.08	0.01
	TobEA upper stem	stem internode	5	5	10.18	10.18	0.19	0.02
	TobEA cauline leaf	cauline leaf	5	5	10.68	10.75	0.12	0.01
	TobEA early senescent leaf	adult vascular leaf	5	5	10.85	10.84	0.20	0.02
	TobEA late senescent leaf	adult vascular leaf	5	5	10.78	10.73	0.23	0.02
	TobEA mature leaf	adult vascular leaf	5	5	10.82	10.83	0.11	0.01
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	10.94	10.96	0.08	0.01
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	10.76	10.71	0.18	0.02
	TobEA young leaf	juvenile vascular leaf	5	5	10.07	10.03	0.12	0.01
	TobEA mature root	root	5	5	9.99	10.03	0.13	0.01
	TobEA young root	root	6	6	10.24	10.15	0.16	0.02
	TobEA seed	seed	6	6	10.25	10.24	0.24	0.02
	TobEA young shoot	shoot system	5	5	10.10	10.10	0.16	0.02

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 146.CEL	10.314025	2e-4	P
	Atlas 143.CEL	10.371851	2e-4	P
	Atlas 144.CEL	10.328005	2e-4	P
	Atlas 147.CEL	10.089182	0.002	P
	Atlas 145.CEL	10.34833	2e-4	P
TobEA vegetative shoot apex	Atlas 246.CEL	10.242845	2e-4	P
	Atlas 249.CEL	10.198838	2e-4	P
	Atlas 250.CEL	10.267136	2e-4	P
	Atlas 247.CEL	10.258655	7e-4	P
	Atlas 61.CEL	10.58936	2e-4	P
	Atlas 248.CEL	10.261687	2e-4	P
	Atlas 58.CEL	10.600019	2e-4	P
	Atlas 59.CEL	10.553444	2e-4	P
TobEA closed bud	Atlas 173.CEL	10.172127	2e-4	P
	Atlas 195.CEL	9.911195	2e-4	P
	Atlas 199.CEL	10.150594	2e-4	P
	Atlas 163.CEL	10.203074	7e-4	P
	Atlas 161.CEL	10.06661	2e-4	P
TobEA open bud	Atlas 169.CEL	9.765877	7e-4	P
	Atlas 171.CEL	10.248149	2e-4	P
	Atlas 159.CEL	10.004621	2e-4	P
	Atlas 167.CEL	10.067333	2e-4	P
	Atlas 244.CEL	10.251564	2e-4	P
TobEA cotyledons	Atlas 74.CEL	9.79776	7e-4	P
	Atlas 70.CEL	9.860026	0.001	P
	Atlas 71.CEL	9.781648	0.001	P
	Atlas 69.CEL	10.207028	2e-4	P
	Atlas 75.CEL	9.911704	7e-4	P
TobEA flower	Atlas 166.CEL	10.536251	2e-4	P
	Atlas 198.CEL	10.288342	2e-4	P
	Atlas 197.CEL	10.059568	7e-4	P
	Atlas 158.CEL	10.64965	2e-4	P
	Atlas 165.CEL	10.655148	2e-4	P
TobEA lower stem	Atlas 172.CEL	10.490263	2e-4	P
	Atlas 245.CEL	10.292246	2e-4	P
	Atlas 164.CEL	10.393579	2e-4	P
	Atlas 174.CEL	10.487681	2e-4	P
	Atlas 200.CEL	10.366689	7e-4	P
TobEA upper stem	Atlas 162.CEL	10.45335	2e-4	P
	Atlas 160.CEL	9.930924	2e-4	P
	Atlas 168.CEL	10.193909	7e-4	P
	Atlas 170.CEL	10.142654	7e-4	P
	Atlas 196.CEL	10.17788	0.001	P
TobEA cauline leaf	Atlas 231.CEL	10.62159	2e-4	P
	Atlas 235.CEL	10.490311	2e-4	P
	Atlas 229.CEL	10.782642	2e-4	P
	Atlas 237.CEL	10.751107	2e-4	P
	Atlas 233.CEL	10.7658	2e-4	P
TobEA early senescent leaf	Atlas 182.CEL	10.992971	2e-4	P
	Atlas 187.CEL	10.601791	7e-4	P
	Atlas 191.CEL	10.844819	2e-4	P
	Atlas 175.CEL	11.093015	2e-4	P
	Atlas 183.CEL	10.735905	0.002	P
TobEA late senescent leaf	Atlas 190.CEL	10.921664	2e-4	P
	Atlas 194.CEL	10.642516	2e-4	P
	Atlas 178.CEL	10.53103	2e-4	P
	Atlas 179.CEL	11.096035	7e-4	P
	Atlas 186.CEL	10.733144	0.001	P
TobEA mature leaf	Atlas 93.CEL	10.712611	2e-4	P
	Atlas 94.CEL	10.832324	2e-4	P
	Atlas 97.CEL	10.98477	2e-4	P
	Atlas 96.CEL	10.735901	2e-4	P
	Atlas 95.CEL	10.852968	2e-4	P
TobEA mid/early senescent leaf	Atlas 184.CEL	10.979439	2e-4	P
	Atlas 176.CEL	10.928202	2e-4	P
	Atlas 181.CEL	10.815639	0.001	P
	Atlas 188.CEL	10.962774	7e-4	P
	Atlas 192.CEL	11.024899	2e-4	P
TobEA mid/late senescent leaf	Atlas 180.CEL	10.926252	0.001	P
	Atlas 177.CEL	10.968283	2e-4	P
	Atlas 185.CEL	10.549862	0.001	P
	Atlas 189.CEL	10.643089	0.002	P
	Atlas 193.CEL	10.709185	2e-4	P
TobEA young leaf	Atlas 53.CEL	10.025228	2e-4	P
	Atlas 57.CEL	9.947833	2e-4	P
	Atlas 54.CEL	10.191813	2e-4	P
	Atlas 55.CEL	9.987371	2e-4	P
	Atlas 56.CEL	10.204029	2e-4	P
TobEA mature root	Atlas 63.CEL	10.164041	2e-4	P
	Atlas 67.CEL	10.029625	2e-4	P
	Atlas 65.CEL	10.035414	2e-4	P
	Atlas 66.CEL	9.80716	2e-4	P
	Atlas 64.CEL	9.924673	2e-4	P
TobEA young root	Atlas 41.CEL	10.141912	2e-4	P
	Atlas 39.CEL	10.479824	2e-4	P
	Atlas 42.CEL	10.400084	2e-4	P
	Atlas 43.CEL	10.151845	7e-4	P
	Atlas 40.CEL	10.149905	2e-4	P
	Atlas 44.CEL	10.101506	2e-4	P
TobEA seed	Atlas 78.CEL	10.273635	2e-4	P
	Atlas 98.CEL	10.215447	2e-4	P
	Atlas 76.CEL	9.933233	2e-4	P
	Atlas 77.CEL	10.084866	2e-4	P
	Atlas 79.CEL	10.625082	2e-4	P
	Atlas 99.CEL	10.348844	2e-4	P
TobEA young shoot	Atlas 87.CEL	10.100015	7e-4	P
	Atlas 88.CEL	9.847264	2e-4	P
	Atlas 86.CEL	10.240781	7e-4	P
	Atlas 90.CEL	10.088201	2e-4	P
	Atlas 89.CEL	10.247468	2e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (30 templates correlated)

Template	Pearson	Internal Mapping
C3338_at	0.8702974	SGN-U447834
C10727_at	0.8560733	No available
C10624_at	0.8539394	SGN-U444243
EB446380_at	0.8481807	SGN-U437067
C9662_at	0.8416294	SGN-U433737
C253_at	0.840926	SGN-U444237
EB425527_at	0.838723	SGN-U465269
C3531_at	0.8339893	SGN-U447710
C4791_s_at	0.8324188	SGN-U438915
EB434957_at	0.8314596	SGN-U431772
TT14_L13_at	0.8263649	SGN-U461708
TT29_M10_at	0.8248434	SGN-U447818
TT29_J14_at	0.8244756	SGN-U424666
C3258_at	0.8219582	SGN-U422978
C3954_at	0.8208138	SGN-U449000
EB445533_at	0.8186735	SGN-U426205
C3620_x_at	0.818338	SGN-U449532
C5252_at	0.8144575	SGN-U421775
CV020092_at	0.814075	SGN-U449511
C11326_at	0.8130994	SGN-U448839
C3181_at	0.8105357	SGN-U423362
C1680_s_at	0.8078248	SGN-U447834
EB446757_at	0.8061193	SGN-U440323
C8395_at	0.804363	SGN-U438642
TT36_E16_at	0.803424	SGN-U470889
TT23_L03_at	0.8033003	SGN-U444844
BP533602_at	0.8031625	SGN-U448756
C11080_s_at	0.8030365	No available
EB445545_at	0.8023093	SGN-U469447
C6133_x_at	0.8014724	SGN-U447771

Correlation Type:

Negative correlations (32 templates correlated)

Template	Pearson	Internal Mapping
DW003891_at	-0.8502415	SGN-U440497
TT16_D03_at	-0.831165	SGN-U437090
C7763_at	-0.8280735	SGN-U422735
C6504_at	-0.8265773	SGN-U468075
AJ718848_at	-0.82545	SGN-U492540
EB428958_at	-0.8252435	SGN-U429295
BP530528_at	-0.8241945	SGN-U501923
C10989_at	-0.8236804	SGN-U444580
C5551_s_at	-0.8222002	SGN-U446460
C5098_at	-0.8218189	SGN-U422735
C3297_s_at	-0.8210995	SGN-U444580
C9076_s_at	-0.820391	SGN-U429298
C4084_at	-0.8191148	SGN-U423270
C2666_at	-0.8165802	SGN-U440474
C5845_at	-0.8161843	SGN-U452913
C3314_at	-0.8161183	SGN-U445715
DV159505_at	-0.8152012	SGN-U436856
BP531909_at	-0.8149174	SGN-U505681
C3831_at	-0.8139288	SGN-U449369
C2470_at	-0.81333	SGN-U445316
EB680433_at	-0.809503	SGN-U433494
C3675_at	-0.8091465	SGN-U433667
BP533958_at	-0.8084607	SGN-U437844
C3297_at	-0.8077073	SGN-U444580
C1813_s_at	-0.8056664	SGN-U444180
C6865_at	-0.8049712	SGN-U444604
CV018526_s_at	-0.8049217	SGN-U448016
C465_at	-0.804033	SGN-U444180
C9324_at	-0.8040083	SGN-U449340
C4202_at	-0.8028586	SGN-U436858
C8930_at	-0.8028104	SGN-U448808
BP533879_at	-0.800351	SGN-U470711

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