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Expression Template: TT19_N18_at

Template Basic Information

Template name:	TT19_N18_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U460396
External db links:	data not available

Annotations for unigene SGN-U460396 (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits (or none blast was used over this dataset)
arabidopsis	blastx	No significant hits (or none blast was used over this dataset)
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
TT19_N18_at_probe_01	PM	data not available	data not available	1
TT19_N18_at_probe_02	PM	data not available	data not available	1
TT19_N18_at_probe_03	PM	data not available	data not available	1
TT19_N18_at_probe_04	PM	data not available	data not available	1
TT19_N18_at_probe_05	PM	data not available	data not available	1
TT19_N18_at_probe_06	PM	data not available	data not available	1
TT19_N18_at_probe_07	PM	data not available	data not available	1
TT19_N18_at_probe_08	PM	data not available	data not available	1
TT19_N18_at_probe_09	PM	data not available	data not available	1
TT19_N18_at_probe_10	PM	data not available	data not available	1
TT19_N18_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	8.76	8.71	0.16	0.02
	TobEA vegetative shoot apex	shoot apex	8	8	8.32	8.30	0.26	0.03
	TobEA closed bud	flower bud	5	5	8.16	8.17	0.13	0.02
	TobEA open bud	flower bud	5	5	8.16	8.21	0.12	0.01
	TobEA cotyledons	cotyledon	5	5	7.75	7.73	0.36	0.05
	TobEA flower	flower	5	5	8.75	8.73	0.16	0.02
	TobEA lower stem	stem internode	5	5	8.36	8.30	0.14	0.02
	TobEA upper stem	stem internode	5	5	7.83	7.94	0.18	0.02
	TobEA cauline leaf	cauline leaf	5	5	8.36	8.36	0.28	0.03
	TobEA early senescent leaf	adult vascular leaf	5	5	8.73	8.72	0.31	0.04
	TobEA late senescent leaf	adult vascular leaf	5	5	9.20	9.16	0.32	0.04
	TobEA mature leaf	adult vascular leaf	5	5	8.88	8.91	0.13	0.01
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	8.83	8.98	0.38	0.04
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	8.93	8.94	0.25	0.03
	TobEA young leaf	juvenile vascular leaf	5	5	8.41	8.40	0.23	0.03
	TobEA mature root	root	5	5	8.38	8.44	0.12	0.01
	TobEA young root	root	6	6	8.13	8.12	0.19	0.02
	TobEA seed	seed	6	6	8.85	8.79	0.17	0.02
	TobEA young shoot	shoot system	5	5	7.70	7.65	0.27	0.04

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 143.CEL	8.658355	2e-4	P
	Atlas 144.CEL	8.578881	2e-4	P
	Atlas 145.CEL	8.914169	7e-4	P
	Atlas 146.CEL	8.706005	2e-4	P
	Atlas 147.CEL	8.929816	2e-4	P
TobEA vegetative shoot apex	Atlas 247.CEL	8.251424	2e-4	P
	Atlas 248.CEL	8.094524	2e-4	P
	Atlas 61.CEL	8.167647	2e-4	P
	Atlas 246.CEL	8.508409	2e-4	P
	Atlas 249.CEL	8.395918	2e-4	P
	Atlas 250.CEL	8.794377	2e-4	P
	Atlas 58.CEL	7.9588513	0.001	P
	Atlas 59.CEL	8.358469	2e-4	P
TobEA closed bud	Atlas 173.CEL	8.36884	0.001	P
	Atlas 163.CEL	8.173083	2e-4	P
	Atlas 161.CEL	8.007757	2e-4	P
	Atlas 195.CEL	8.103116	2e-4	P
	Atlas 199.CEL	8.165922	2e-4	P
TobEA open bud	Atlas 169.CEL	7.966803	2e-4	P
	Atlas 159.CEL	8.127478	2e-4	P
	Atlas 167.CEL	8.231497	2e-4	P
	Atlas 244.CEL	8.212823	2e-4	P
	Atlas 171.CEL	8.252589	2e-4	P
TobEA cotyledons	Atlas 74.CEL	7.7796674	7e-4	P
	Atlas 70.CEL	7.2681203	2e-4	P
	Atlas 71.CEL	7.6773367	2e-4	P
	Atlas 69.CEL	8.273769	2e-4	P
	Atlas 75.CEL	7.726832	0.004	P
TobEA flower	Atlas 158.CEL	8.584918	2e-4	P
	Atlas 165.CEL	8.733942	2e-4	P
	Atlas 197.CEL	8.614284	2e-4	P
	Atlas 166.CEL	8.839612	7e-4	P
	Atlas 198.CEL	8.978538	2e-4	P
TobEA lower stem	Atlas 172.CEL	8.295898	2e-4	P
	Atlas 164.CEL	8.284109	7e-4	P
	Atlas 174.CEL	8.216233	2e-4	P
	Atlas 200.CEL	8.531447	7e-4	P
	Atlas 245.CEL	8.484451	2e-4	P
TobEA upper stem	Atlas 162.CEL	7.965137	2e-4	P
	Atlas 168.CEL	7.9390693	2e-4	P
	Atlas 160.CEL	7.7763467	2e-4	P
	Atlas 170.CEL	7.545005	2e-4	P
	Atlas 196.CEL	7.9415493	2e-4	P
TobEA cauline leaf	Atlas 229.CEL	8.527823	2e-4	P
	Atlas 237.CEL	8.281474	2e-4	P
	Atlas 231.CEL	8.363879	2e-4	P
	Atlas 233.CEL	8.693745	2e-4	P
	Atlas 235.CEL	7.941591	2e-4	P
TobEA early senescent leaf	Atlas 182.CEL	8.49503	2e-4	P
	Atlas 175.CEL	8.3923025	2e-4	P
	Atlas 183.CEL	8.722967	2e-4	P
	Atlas 187.CEL	9.182279	7e-4	P
	Atlas 191.CEL	8.84453	2e-4	P
TobEA late senescent leaf	Atlas 186.CEL	9.057433	2e-4	P
	Atlas 178.CEL	8.770506	2e-4	P
	Atlas 179.CEL	9.376608	2e-4	P
	Atlas 190.CEL	9.625606	2e-4	P
	Atlas 194.CEL	9.159677	7e-4	P
TobEA mature leaf	Atlas 93.CEL	8.7479105	2e-4	P
	Atlas 94.CEL	8.955673	2e-4	P
	Atlas 96.CEL	8.90844	2e-4	P
	Atlas 97.CEL	8.752295	2e-4	P
	Atlas 95.CEL	9.033241	2e-4	P
TobEA mid/early senescent leaf	Atlas 176.CEL	8.515423	2e-4	P
	Atlas 181.CEL	8.983532	0.002	P
	Atlas 184.CEL	8.376622	2e-4	P
	Atlas 188.CEL	9.312074	7e-4	P
	Atlas 192.CEL	8.985134	2e-4	P
TobEA mid/late senescent leaf	Atlas 185.CEL	8.937647	2e-4	P
	Atlas 189.CEL	9.29363	7e-4	P
	Atlas 193.CEL	8.77654	2e-4	P
	Atlas 177.CEL	8.6329975	7e-4	P
	Atlas 180.CEL	9.009395	2e-4	P
TobEA young leaf	Atlas 53.CEL	8.559543	2e-4	P
	Atlas 57.CEL	8.669815	2e-4	P
	Atlas 56.CEL	8.31738	2e-4	P
	Atlas 54.CEL	8.080932	2e-4	P
	Atlas 55.CEL	8.400239	2e-4	P
TobEA mature root	Atlas 63.CEL	8.471238	7e-4	P
	Atlas 67.CEL	8.190085	2e-4	P
	Atlas 65.CEL	8.445312	2e-4	P
	Atlas 66.CEL	8.440656	2e-4	P
	Atlas 64.CEL	8.34759	7e-4	P
TobEA young root	Atlas 41.CEL	8.26719	2e-4	P
	Atlas 40.CEL	7.8428545	2e-4	P
	Atlas 44.CEL	8.009851	2e-4	P
	Atlas 39.CEL	8.400279	2e-4	P
	Atlas 42.CEL	8.122648	2e-4	P
	Atlas 43.CEL	8.114603	2e-4	P
TobEA seed	Atlas 78.CEL	8.754388	7e-4	P
	Atlas 76.CEL	8.68856	2e-4	P
	Atlas 77.CEL	8.718378	7e-4	P
	Atlas 98.CEL	8.996819	2e-4	P
	Atlas 99.CEL	9.129879	2e-4	P
	Atlas 79.CEL	8.829723	7e-4	P
TobEA young shoot	Atlas 87.CEL	7.545089	2e-4	P
	Atlas 88.CEL	8.050508	0.002	P
	Atlas 86.CEL	7.878953	2e-4	P
	Atlas 90.CEL	7.3668494	0.002	P
	Atlas 89.CEL	7.6524115	2e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (18 templates correlated)

Template	Pearson	Internal Mapping
BP531457_at	0.8457933	SGN-U421130
EB679481_at	0.8447906	SGN-U426041
BP531457_s_at	0.8368428	SGN-U421130
C10576_at	0.8356974	SGN-U451419
EB435581_at	0.8356649	SGN-U448946
C5502_s_at	0.8350001	SGN-U425394
EB432312_at	0.8272817	SGN-U440801
TT11_H07_at	0.8260547	SGN-U433858
C187_at	0.8238091	SGN-U438575
EB443206_at	0.819057	SGN-U454774
C4234_at	0.818271	SGN-U436459
BP128420_at	0.8155828	SGN-U471309
TT04_E08_at	0.8129263	SGN-U456683
TT03_J17_at	0.8112129	SGN-U442150
TT40_F05_at	0.8109998	SGN-U448167
C7925_at	0.806764	SGN-U430651
DW002611_at	0.8017047	SGN-U432384
BP532579_at	0.800151	SGN-U421130

Correlation Type:

Negative correlations (7 templates correlated)

Template	Pearson	Internal Mapping
EB447074_at	-0.8432712	SGN-U465563
C1352_s_at	-0.8298428	SGN-U447466
C6244_at	-0.822253	SGN-U447156
C3546_s_at	-0.8175415	SGN-U451793
C4885_at	-0.8100981	SGN-U439464
C6639_at	-0.8038273	SGN-U446220
C1809_at	-0.8037318	SGN-U439518

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