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Expression Template: TT04_O04_at

Template Basic Information

Template name:	TT04_O04_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U459712
External db links:	data not available

Annotations for unigene SGN-U459712 (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits (or none blast was used over this dataset)
arabidopsis	blastx	No significant hits (or none blast was used over this dataset)
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
TT04_O04_at_probe_01	PM	data not available	data not available	1
TT04_O04_at_probe_02	PM	data not available	data not available	1
TT04_O04_at_probe_03	PM	data not available	data not available	1
TT04_O04_at_probe_04	PM	data not available	data not available	1
TT04_O04_at_probe_05	PM	data not available	data not available	1
TT04_O04_at_probe_06	PM	data not available	data not available	1
TT04_O04_at_probe_07	PM	data not available	data not available	1
TT04_O04_at_probe_08	PM	data not available	data not available	1
TT04_O04_at_probe_09	PM	data not available	data not available	1
TT04_O04_at_probe_10	PM	data not available	data not available	1
TT04_O04_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	8.19	8.18	0.19	0.02
	TobEA vegetative shoot apex	shoot apex	8	8	8.18	8.57	0.86	0.10
	TobEA closed bud	flower bud	5	5	7.40	7.26	0.34	0.05
	TobEA open bud	flower bud	5	5	6.98	6.88	0.86	0.12
	TobEA cotyledons	cotyledon	5	5	6.89	6.68	0.39	0.06
	TobEA flower	flower	5	5	7.17	7.33	0.43	0.06
	TobEA lower stem	stem internode	5	5	7.27	7.22	0.62	0.09
	TobEA upper stem	stem internode	5	5	6.36	6.22	0.70	0.11
	TobEA cauline leaf	cauline leaf	5	5	6.33	6.37	0.19	0.03
	TobEA early senescent leaf	adult vascular leaf	5	5	7.40	7.86	0.82	0.11
	TobEA late senescent leaf	adult vascular leaf	5	5	7.45	7.49	0.63	0.08
	TobEA mature leaf	adult vascular leaf	5	5	7.28	7.23	0.19	0.03
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	6.76	6.88	0.58	0.09
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	6.46	6.50	1.12	0.17
	TobEA young leaf	juvenile vascular leaf	5	5	7.89	7.85	0.10	0.01
	TobEA mature root	root	5	5	7.86	7.93	0.26	0.03
	TobEA young root	root	6	6	7.89	7.74	0.44	0.06
	TobEA seed	seed	6	6	9.02	9.05	0.43	0.05
	TobEA young shoot	shoot system	5	5	7.30	7.22	0.26	0.04

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 143.CEL	7.9359913	0.002	P
	Atlas 144.CEL	8.456694	2e-4	P
	Atlas 146.CEL	8.258979	0.001	P
	Atlas 145.CEL	8.112435	0.001	P
	Atlas 147.CEL	8.179845	0.002	P
TobEA vegetative shoot apex	Atlas 249.CEL	8.951169	7e-4	P
	Atlas 61.CEL	7.302752	2e-4	P
	Atlas 246.CEL	8.667023	2e-4	P
	Atlas 250.CEL	8.969193	7e-4	P
	Atlas 59.CEL	6.807612	0.003	P
	Atlas 247.CEL	8.811841	7e-4	P
	Atlas 248.CEL	8.472034	7e-4	P
	Atlas 58.CEL	7.445802	0.002	P
TobEA closed bud	Atlas 199.CEL	7.964337	0.001	P
	Atlas 173.CEL	7.1615825	0.006	P
	Atlas 195.CEL	7.4932003	7e-4	P
	Atlas 161.CEL	7.1352034	0.002	P
	Atlas 163.CEL	7.2589707	0.002	P
TobEA open bud	Atlas 159.CEL	5.883184	0.008	P
	Atlas 169.CEL	6.882915	0.001	P
	Atlas 167.CEL	7.6585207	0.002	P
	Atlas 244.CEL	6.4931493	7e-4	P
	Atlas 171.CEL	8.004944	0.006	P
TobEA cotyledons	Atlas 70.CEL	6.5610933	0.014	P
	Atlas 74.CEL	6.612894	0.001	P
	Atlas 75.CEL	7.1867313	0.002	P
	Atlas 71.CEL	6.6812162	0.008	P
	Atlas 69.CEL	7.4276423	7e-4	P
TobEA flower	Atlas 166.CEL	6.7481337	0.001	P
	Atlas 198.CEL	7.618559	0.001	P
	Atlas 158.CEL	6.6743927	2e-4	P
	Atlas 165.CEL	7.330645	2e-4	P
	Atlas 197.CEL	7.458	2e-4	P
TobEA lower stem	Atlas 174.CEL	7.220899	2e-4	P
	Atlas 245.CEL	8.270223	2e-4	P
	Atlas 164.CEL	6.717689	2e-4	P
	Atlas 172.CEL	6.8042665	7e-4	P
	Atlas 200.CEL	7.313698	7e-4	P
TobEA upper stem	Atlas 168.CEL	6.769694	0.001	P
	Atlas 162.CEL	5.4704432	0.056	M
	Atlas 170.CEL	6.2239647	7e-4	P
	Atlas 196.CEL	7.30834	0.004	P
	Atlas 160.CEL	6.039118	2e-4	P
TobEA cauline leaf	Atlas 233.CEL	6.591072	0.003	P
	Atlas 231.CEL	6.1123686	0.002	P
	Atlas 237.CEL	6.3759274	0.004	P
	Atlas 229.CEL	6.3674593	0.002	P
	Atlas 235.CEL	6.1808705	0.006	P
TobEA early senescent leaf	Atlas 183.CEL	7.858055	0.003	P
	Atlas 187.CEL	8.07208	0.019	P
	Atlas 175.CEL	6.396623	0.006	P
	Atlas 182.CEL	6.6082664	0.004	P
	Atlas 191.CEL	8.052587	2e-4	P
TobEA late senescent leaf	Atlas 179.CEL	7.9659634	7e-4	P
	Atlas 190.CEL	8.145073	2e-4	P
	Atlas 194.CEL	7.491995	7e-4	P
	Atlas 178.CEL	6.7070985	0.003	P
	Atlas 186.CEL	6.931382	0.019	P
TobEA mature leaf	Atlas 94.CEL	7.291716	2e-4	P
	Atlas 95.CEL	7.0983486	0.001	P
	Atlas 96.CEL	7.1953826	0.001	P
	Atlas 93.CEL	7.606695	0.002	P
	Atlas 97.CEL	7.2327347	0.003	P
TobEA mid/early senescent leaf	Atlas 188.CEL	7.3897576	2e-4	P
	Atlas 181.CEL	7.1604166	7e-4	P
	Atlas 192.CEL	6.883739	7e-4	P
	Atlas 176.CEL	6.4707074	7e-4	P
	Atlas 184.CEL	5.9200583	0.002	P
TobEA mid/late senescent leaf	Atlas 177.CEL	6.4982667	0.002	P
	Atlas 185.CEL	6.9762883	0.004	P
	Atlas 193.CEL	5.0164995	0.008	P
	Atlas 180.CEL	5.8306093	0.002	P
	Atlas 189.CEL	7.9684234	0.004	P
TobEA young leaf	Atlas 54.CEL	7.851466	7e-4	P
	Atlas 56.CEL	7.822786	7e-4	P
	Atlas 57.CEL	8.072894	0.002	P
	Atlas 55.CEL	7.851658	0.003	P
	Atlas 53.CEL	7.8569827	7e-4	P
TobEA mature root	Atlas 63.CEL	8.08383	2e-4	P
	Atlas 66.CEL	7.925098	7e-4	P
	Atlas 65.CEL	7.924807	2e-4	P
	Atlas 64.CEL	7.9701824	7e-4	P
	Atlas 67.CEL	7.405595	2e-4	P
TobEA young root	Atlas 39.CEL	8.604369	2e-4	P
	Atlas 42.CEL	7.5191193	2e-4	P
	Atlas 40.CEL	7.6700845	2e-4	P
	Atlas 43.CEL	7.515567	2e-4	P
	Atlas 41.CEL	8.229996	2e-4	P
	Atlas 44.CEL	7.8046064	2e-4	P
TobEA seed	Atlas 78.CEL	9.130607	2e-4	P
	Atlas 79.CEL	9.614103	2e-4	P
	Atlas 99.CEL	9.269327	2e-4	P
	Atlas 76.CEL	8.345679	7e-4	P
	Atlas 98.CEL	8.789017	7e-4	P
	Atlas 77.CEL	8.97026	2e-4	P
TobEA young shoot	Atlas 88.CEL	7.193753	7e-4	P
	Atlas 86.CEL	7.103967	0.006	P
	Atlas 89.CEL	7.230811	2e-4	P
	Atlas 90.CEL	7.7500677	2e-4	P
	Atlas 87.CEL	7.2177234	0.003	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (13 templates correlated)

Template	Pearson	Internal Mapping
BP532537_at	0.9195323	SGN-U461396
AJ717999_s_at	0.9129068	SGN-U444480
EB431055_x_at	0.8950056	SGN-U449273
DV159907_at	0.8839012	SGN-U461378
DV159657_s_at	0.8727702	SGN-U449273
C8052_x_at	0.8669284	SGN-U448429
DW001811_at	0.8614782	SGN-U460236
EB444888_at	0.8479429	SGN-U457905
DV158099_at	0.8451216	SGN-U449445
EB433013_at	0.840746	SGN-U487370
AJ717891_x_at	0.8341756	SGN-U446725
AJ632828_at	0.8188087	SGN-U434948
BP192645_at	0.8039315	SGN-U463718

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