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Expression Template: EB682184_at

Template Basic Information

Template name:	EB682184_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U499875
External db links:	GenBank: EB682184

Annotations for unigene SGN-U499875 (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157359529\|emb\|CAO67730.1\|	295	2e-78	75.37	603 bp (83.5%)	3
Description:	unnamed
arabidopsis	blastx	No significant hits (or none blast was used over this dataset)
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
EB682184_at_probe_01	PM	data not available	data not available	1
EB682184_at_probe_02	PM	data not available	data not available	1
EB682184_at_probe_03	PM	data not available	data not available	1
EB682184_at_probe_04	PM	data not available	data not available	1
EB682184_at_probe_05	PM	data not available	data not available	1
EB682184_at_probe_06	PM	data not available	data not available	1
EB682184_at_probe_07	PM	data not available	data not available	1
EB682184_at_probe_08	PM	data not available	data not available	1
EB682184_at_probe_09	PM	data not available	data not available	1
EB682184_at_probe_10	PM	data not available	data not available	1
EB682184_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	8.19	8.26	0.21	0.03
	TobEA vegetative shoot apex	shoot apex	8	8	6.61	6.42	0.62	0.09
	TobEA closed bud	flower bud	5	5	7.02	6.97	0.35	0.05
	TobEA open bud	flower bud	5	5	5.98	6.10	0.44	0.07
	TobEA cotyledons	cotyledon	5	5	3.94	2.91	2.59	0.66
	TobEA flower	flower	5	5	1.77	2.20	1.75	0.99
	TobEA lower stem	stem internode	5	5	3.52	3.57	0.99	0.28
	TobEA upper stem	stem internode	5	5	5.56	5.45	0.61	0.11
	TobEA cauline leaf	cauline leaf	5	5	0.88	0.80	0.28	0.32
	TobEA early senescent leaf	adult vascular leaf	5	5	2.63	1.25	2.49	0.95
	TobEA late senescent leaf	adult vascular leaf	5	5	2.57	2.28	1.56	0.61
	TobEA mature leaf	adult vascular leaf	5	5	2.43	2.24	1.27	0.52
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	2.77	2.22	1.93	0.70
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	1.39	1.03	0.85	0.61
	TobEA young leaf	juvenile vascular leaf	5	5	7.38	7.68	0.84	0.11
	TobEA mature root	root	5	5	5.74	5.75	0.28	0.05
	TobEA young root	root	6	6	5.33	5.40	0.62	0.12
	TobEA seed	seed	6	6	2.87	2.85	1.54	0.54
	TobEA young shoot	shoot system	5	5	6.47	6.59	0.38	0.06

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 143.CEL	8.260752	2e-4	P
	Atlas 147.CEL	8.310047	2e-4	P
	Atlas 146.CEL	8.359971	2e-4	P
	Atlas 144.CEL	7.841207	2e-4	P
	Atlas 145.CEL	8.153543	2e-4	P
TobEA vegetative shoot apex	Atlas 248.CEL	5.816087	2e-4	P
	Atlas 59.CEL	6.450395	7e-4	P
	Atlas 61.CEL	7.2442355	2e-4	P
	Atlas 246.CEL	6.114373	0.003	P
	Atlas 249.CEL	6.379774	2e-4	P
	Atlas 247.CEL	7.6631217	2e-4	P
	Atlas 250.CEL	6.244164	0.004	P
	Atlas 58.CEL	6.966329	7e-4	P
TobEA closed bud	Atlas 195.CEL	6.967023	2e-4	P
	Atlas 199.CEL	6.596177	7e-4	P
	Atlas 161.CEL	7.381466	2e-4	P
	Atlas 173.CEL	6.7767158	0.002	P
	Atlas 163.CEL	7.37936	2e-4	P
TobEA open bud	Atlas 244.CEL	5.210949	0.014	P
	Atlas 169.CEL	6.1011224	2e-4	P
	Atlas 167.CEL	6.285891	0.004	P
	Atlas 171.CEL	6.22258	0.002	P
	Atlas 159.CEL	6.0983796	7e-4	P
TobEA cotyledons	Atlas 70.CEL	1.2928214	0.781	A
	Atlas 71.CEL	6.8104515	0.112	A
	Atlas 69.CEL	6.5979576	0.024	P
	Atlas 75.CEL	2.0791686	0.805	A
	Atlas 74.CEL	2.906384	0.696	A
TobEA flower	Atlas 198.CEL	0.058687568	0.994	A
	Atlas 165.CEL	2.2043507	0.805	A
	Atlas 197.CEL	2.4027503	0.726	A
	Atlas 158.CEL	4.163213	0.432	A
	Atlas 166.CEL	0.032519482	0.799	A
TobEA lower stem	Atlas 200.CEL	2.1790175	0.696	A
	Atlas 245.CEL	3.0621123	0.534	A
	Atlas 164.CEL	3.942144	0.046	P
	Atlas 172.CEL	3.571125	0.500	A
	Atlas 174.CEL	4.822269	2e-4	P
TobEA upper stem	Atlas 196.CEL	6.5449324	2e-4	P
	Atlas 160.CEL	5.4524593	0.002	P
	Atlas 168.CEL	4.9662676	0.150	A
	Atlas 162.CEL	5.197263	0.019	P
	Atlas 170.CEL	5.643207	0.001	P
TobEA cauline leaf	Atlas 231.CEL	0.5326919	0.850	A
	Atlas 233.CEL	0.8039607	0.829	A
	Atlas 235.CEL	1.1000946	0.805	A
	Atlas 229.CEL	1.2239001	0.781	A
	Atlas 237.CEL	0.72173166	0.888	A
TobEA early senescent leaf	Atlas 187.CEL	4.7853537	0.334	A
	Atlas 191.CEL	0.15579426	0.954	A
	Atlas 182.CEL	1.161995	0.829	A
	Atlas 175.CEL	1.2514237	0.781	A
	Atlas 183.CEL	5.798201	0.195	A
TobEA late senescent leaf	Atlas 190.CEL	1.8826065	0.805	A
	Atlas 194.CEL	4.1425447	0.304	A
	Atlas 178.CEL	0.46700758	0.888	A
	Atlas 186.CEL	4.081683	0.601	A
	Atlas 179.CEL	2.2768922	0.805	A
TobEA mature leaf	Atlas 96.CEL	0.81442386	0.865	A
	Atlas 95.CEL	3.9560697	0.246	A
	Atlas 93.CEL	1.7304007	0.634	A
	Atlas 94.CEL	3.4073956	0.304	A
	Atlas 97.CEL	2.2417395	0.696	A
TobEA mid/early senescent leaf	Atlas 184.CEL	1.4714161	0.754	A
	Atlas 188.CEL	2.2226727	0.829	A
	Atlas 192.CEL	4.543414	0.246	A
	Atlas 176.CEL	0.5985171	0.970	A
	Atlas 181.CEL	5.0063157	0.219	A
TobEA mid/late senescent leaf	Atlas 185.CEL	1.4319141	0.962	A
	Atlas 189.CEL	0.82813346	0.976	A
	Atlas 193.CEL	0.8225216	0.905	A
	Atlas 177.CEL	1.0259805	0.905	A
	Atlas 180.CEL	2.8542376	0.781	A
TobEA young leaf	Atlas 56.CEL	7.5281878	2e-4	P
	Atlas 53.CEL	7.6839294	7e-4	P
	Atlas 57.CEL	7.9086375	2e-4	P
	Atlas 54.CEL	5.9080386	0.018	P
	Atlas 55.CEL	7.886379	0.002	P
TobEA mature root	Atlas 65.CEL	5.7511787	0.011	P
	Atlas 66.CEL	6.147657	2e-4	P
	Atlas 64.CEL	5.824794	0.003	P
	Atlas 63.CEL	5.5649333	0.006	P
	Atlas 67.CEL	5.4064198	0.003	P
TobEA young root	Atlas 40.CEL	5.2137585	2e-4	P
	Atlas 44.CEL	5.9177628	2e-4	P
	Atlas 41.CEL	5.4756207	0.038	P
	Atlas 43.CEL	5.3151026	0.001	P
	Atlas 39.CEL	4.2039523	0.195	A
	Atlas 42.CEL	5.8282514	0.002	P
TobEA seed	Atlas 76.CEL	5.4438567	0.219	A
	Atlas 79.CEL	1.0897354	0.932	A
	Atlas 98.CEL	1.6244329	0.634	A
	Atlas 99.CEL	2.4984298	0.666	A
	Atlas 77.CEL	3.210087	0.592	A
	Atlas 78.CEL	3.360693	0.534	A
TobEA young shoot	Atlas 86.CEL	6.591652	0.019	P
	Atlas 90.CEL	5.7998347	0.112	A
	Atlas 89.CEL	6.5751996	0.171	A
	Atlas 87.CEL	6.669633	0.056	M
	Atlas 88.CEL	6.704923	0.038	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (70 templates correlated)

Template	Pearson	Internal Mapping
C262_at	0.8531121	SGN-U439592
BP533815_at	0.851534	SGN-U437628
AJ718363_at	0.848943	SGN-U456036
C9520_s_at	0.847554	SGN-U450106
AJ718431_x_at	0.8468675	SGN-U439669
DV159001_at	0.846783	SGN-U430096
BP192699_at	0.845069	SGN-U484382
DV161967_at	0.844544	SGN-U439593
BP534837_at	0.8440434	SGN-U464810
BP131849_x_at	0.8428133	SGN-U439591
C9092_at	0.8408061	SGN-U440913
C3554_s_at	0.8405418	SGN-U437627
EB425401_s_at	0.8395411	SGN-U437627
TT24_P23_at	0.8393001	SGN-U451727
BP531347_at	0.8383857	SGN-U443201
C9023_at	0.838138	SGN-U435710
C9080_at	0.8358757	SGN-U430509
C2838_at	0.8358247	SGN-U424735
BP533223_s_at	0.8357652	SGN-U456370
DV162210_at	0.8349871	SGN-U468707
C9039_s_at	0.8345854	SGN-U443294
BP136730_at	0.8316954	SGN-U481716
DV161967_s_at	0.828864	SGN-U439593
BP531768_at	0.8259023	SGN-U431913
CV017150_at	0.8256594	SGN-U501956
BP135799_at	0.8253887	SGN-U443201
C8186_at	0.8248262	SGN-U431333
GC350_at	0.8246831	No available
AJ718058_s_at	0.8245107	SGN-U424559
EB434452_x_at	0.8238437	SGN-U437628
C9045_at	0.8230717	SGN-U421876
C11042_at	0.8230331	No available
BP535310_at	0.822025	SGN-U450787
AJ718064_x_at	0.8217496	SGN-U438697
C8591_s_at	0.8213247	SGN-U431334
DV160102_at	0.8211709	SGN-U440687
AB003038_at	0.8207339	SGN-U441663
C1086_at	0.8189051	SGN-U428352
C5608_at	0.8171404	SGN-U445448
EB677474_at	0.8170411	SGN-U488599
C992_s_at	0.8158976	SGN-U445269
BP134537_at	0.8153361	SGN-U422179
C4471_at	0.815318	SGN-U448573
BP131077_at	0.8149808	SGN-U479158
BP134939_at	0.8149639	SGN-U466530
BP132579_at	0.8147522	SGN-U450555
EB451707_at	0.814424	SGN-U446674
C1116_s_at	0.8135183	SGN-U448467
C4730_x_at	0.8132902	No available
C8998_at	0.8124403	SGN-U434079
DW001499_at	0.8119794	SGN-U437155
C8186_x_at	0.8105102	SGN-U431333
C11420_at	0.8095167	No available
EB446717_at	0.8091121	SGN-U429493
BP530697_s_at	0.8084555	SGN-U422179
BP534335_at	0.8080929	SGN-U431285
EB434452_at	0.8073502	SGN-U437628
C9111_at	0.8071765	SGN-U430687
C8036_at	0.8070478	SGN-U435890
C2768_at	0.8069083	SGN-U424105
BP530697_at	0.8067868	SGN-U422179
EB426263_s_at	0.8046346	SGN-U445492
AJ718952_s_at	0.8045327	SGN-U439669
C2573_at	0.8038656	SGN-U436370
CV018493_x_at	0.8037603	SGN-U444356
C9582_at	0.8036683	SGN-U437947
CV018166_s_at	0.8033729	SGN-U449438
C10976_s_at	0.8029013	SGN-U436369
EB450817_at	0.8015936	SGN-U499012
TT12_N15_at	0.80014	SGN-U422179

Correlation Type:

Negative correlations (2 templates correlated)

Template	Pearson	Internal Mapping
C5875_s_at	-0.8194271	SGN-U434214
EB436705_at	-0.8051052	SGN-U445694

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