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Expression Template: EB681532_at

Template Basic Information

Template name:	EB681532_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U445317
External db links:	GenBank: EB681532

Annotations for unigene SGN-U445317 (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|48057665\|gb\|AAT39964.1\|	330	3e-88	56.44	909 bp (46.9%)	1
Description:	Putative gag polyprotein, identical [Solanum demissum]
arabidopsis	blastx	No significant hits (or none blast was used over this dataset)
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
EB681532_at_probe_01	PM	data not available	data not available	1
EB681532_at_probe_02	PM	data not available	data not available	1
EB681532_at_probe_03	PM	data not available	data not available	1
EB681532_at_probe_04	PM	data not available	data not available	1
EB681532_at_probe_05	PM	data not available	data not available	1
EB681532_at_probe_06	PM	data not available	data not available	1
EB681532_at_probe_07	PM	data not available	data not available	1
EB681532_at_probe_08	PM	data not available	data not available	1
EB681532_at_probe_09	PM	data not available	data not available	1
EB681532_at_probe_10	PM	data not available	data not available	1
EB681532_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	9.18	9.07	0.36	0.04
	TobEA vegetative shoot apex	shoot apex	8	8	8.10	8.17	0.69	0.09
	TobEA closed bud	flower bud	5	5	8.87	8.83	0.23	0.03
	TobEA open bud	flower bud	5	5	8.68	8.65	0.55	0.06
	TobEA cotyledons	cotyledon	5	5	7.75	7.86	0.42	0.05
	TobEA flower	flower	5	5	8.57	8.53	0.19	0.02
	TobEA lower stem	stem internode	5	5	8.30	8.38	0.26	0.03
	TobEA upper stem	stem internode	5	5	8.06	7.87	0.34	0.04
	TobEA cauline leaf	cauline leaf	5	5	7.44	7.46	0.37	0.05
	TobEA early senescent leaf	adult vascular leaf	5	5	7.89	8.46	1.13	0.14
	TobEA late senescent leaf	adult vascular leaf	5	5	8.42	8.06	0.57	0.07
	TobEA mature leaf	adult vascular leaf	5	5	8.24	8.29	0.22	0.03
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	7.37	7.44	1.00	0.14
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	7.41	7.22	0.88	0.12
	TobEA young leaf	juvenile vascular leaf	5	5	8.47	8.42	0.53	0.06
	TobEA mature root	root	5	5	8.35	8.32	0.31	0.04
	TobEA young root	root	6	6	7.78	7.92	0.41	0.05
	TobEA seed	seed	6	6	9.06	9.01	0.23	0.02
	TobEA young shoot	shoot system	5	5	8.19	8.26	0.21	0.03

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 143.CEL	9.073882	0.011	P
	Atlas 144.CEL	8.771448	0.019	P
	Atlas 147.CEL	9.407742	0.019	P
	Atlas 146.CEL	8.967127	0.011	P
	Atlas 145.CEL	9.664143	0.019	P
TobEA vegetative shoot apex	Atlas 59.CEL	7.137356	0.112	A
	Atlas 247.CEL	8.629664	0.008	P
	Atlas 248.CEL	7.58292	0.024	P
	Atlas 249.CEL	8.809755	0.008	P
	Atlas 61.CEL	7.703144	0.014	P
	Atlas 246.CEL	8.687372	0.006	P
	Atlas 250.CEL	8.768002	0.008	P
	Atlas 58.CEL	7.470099	0.081	A
TobEA closed bud	Atlas 195.CEL	8.96215	0.019	P
	Atlas 199.CEL	9.194909	0.014	P
	Atlas 161.CEL	8.830589	0.024	P
	Atlas 173.CEL	8.574602	0.019	P
	Atlas 163.CEL	8.772404	0.019	P
TobEA open bud	Atlas 169.CEL	8.648367	0.014	P
	Atlas 244.CEL	8.016617	0.014	P
	Atlas 159.CEL	8.31469	0.030	P
	Atlas 167.CEL	9.417136	0.008	P
	Atlas 171.CEL	9.002273	0.011	P
TobEA cotyledons	Atlas 75.CEL	7.8643265	0.171	A
	Atlas 69.CEL	7.8949046	0.056	M
	Atlas 74.CEL	7.824635	0.056	M
	Atlas 70.CEL	7.0316563	0.095	A
	Atlas 71.CEL	8.148123	0.195	A
TobEA flower	Atlas 158.CEL	8.533103	0.006	P
	Atlas 165.CEL	8.294111	0.019	P
	Atlas 198.CEL	8.771184	0.004	P
	Atlas 166.CEL	8.514181	0.019	P
	Atlas 197.CEL	8.734209	0.008	P
TobEA lower stem	Atlas 164.CEL	8.02217	0.038	P
	Atlas 172.CEL	8.029231	0.024	P
	Atlas 245.CEL	8.571661	0.011	P
	Atlas 174.CEL	8.507859	0.014	P
	Atlas 200.CEL	8.375601	0.019	P
TobEA upper stem	Atlas 160.CEL	7.7154346	0.038	P
	Atlas 168.CEL	8.385103	0.019	P
	Atlas 162.CEL	7.871661	0.112	A
	Atlas 170.CEL	7.864161	0.024	P
	Atlas 196.CEL	8.477494	0.014	P
TobEA cauline leaf	Atlas 233.CEL	7.9708467	0.046	P
	Atlas 231.CEL	7.4569736	0.081	A
	Atlas 237.CEL	6.9640107	0.038	P
	Atlas 229.CEL	7.261317	0.019	P
	Atlas 235.CEL	7.565343	0.046	P
TobEA early senescent leaf	Atlas 183.CEL	8.455211	0.019	P
	Atlas 187.CEL	8.494271	0.024	P
	Atlas 191.CEL	9.136937	0.019	P
	Atlas 175.CEL	6.7324295	0.030	P
	Atlas 182.CEL	6.6424994	0.030	P
TobEA late senescent leaf	Atlas 179.CEL	9.032355	0.019	P
	Atlas 178.CEL	8.055025	0.046	P
	Atlas 186.CEL	8.001623	0.056	M
	Atlas 190.CEL	9.058388	0.030	P
	Atlas 194.CEL	7.964119	0.014	P
TobEA mature leaf	Atlas 93.CEL	7.9445443	0.019	P
	Atlas 96.CEL	8.285871	0.030	P
	Atlas 95.CEL	8.352491	0.038	P
	Atlas 94.CEL	8.12433	0.014	P
	Atlas 97.CEL	8.506648	0.006	P
TobEA mid/early senescent leaf	Atlas 176.CEL	6.8587103	0.056	M
	Atlas 184.CEL	6.033562	0.150	A
	Atlas 188.CEL	8.670392	0.024	P
	Atlas 181.CEL	7.8526335	0.024	P
	Atlas 192.CEL	7.43751	0.030	P
TobEA mid/late senescent leaf	Atlas 180.CEL	7.22333	0.068	A
	Atlas 177.CEL	6.3510084	0.130	A
	Atlas 185.CEL	8.1314745	0.011	P
	Atlas 189.CEL	8.46699	0.019	P
	Atlas 193.CEL	6.8772516	0.081	A
TobEA young leaf	Atlas 55.CEL	8.424053	0.081	A
	Atlas 53.CEL	8.761374	0.024	P
	Atlas 56.CEL	9.099356	0.019	P
	Atlas 57.CEL	8.373225	0.014	P
	Atlas 54.CEL	7.670164	0.068	A
TobEA mature root	Atlas 65.CEL	8.158105	0.011	P
	Atlas 66.CEL	8.013891	0.024	P
	Atlas 63.CEL	8.470013	0.019	P
	Atlas 67.CEL	8.3162985	0.008	P
	Atlas 64.CEL	8.812695	0.019	P
TobEA young root	Atlas 39.CEL	7.619531	0.038	P
	Atlas 40.CEL	8.036502	0.030	P
	Atlas 41.CEL	7.798798	0.081	A
	Atlas 43.CEL	7.039886	0.150	A
	Atlas 44.CEL	8.038413	0.019	P
	Atlas 42.CEL	8.133542	0.030	P
TobEA seed	Atlas 76.CEL	8.769087	0.011	P
	Atlas 77.CEL	9.024331	0.004	P
	Atlas 78.CEL	8.974375	0.011	P
	Atlas 99.CEL	9.005512	0.014	P
	Atlas 79.CEL	9.17659	0.008	P
	Atlas 98.CEL	9.438833	0.011	P
TobEA young shoot	Atlas 86.CEL	8.264845	0.046	P
	Atlas 87.CEL	8.405807	0.095	A
	Atlas 90.CEL	7.9544306	0.056	M
	Atlas 89.CEL	8.350646	0.068	A
	Atlas 88.CEL	7.996087	0.056	M

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (10 templates correlated)

Template	Pearson	Internal Mapping
C9014_x_at	0.9048079	SGN-U446978
C9048_at	0.8970867	SGN-U446978
C1397_s_at	0.845336	SGN-U434127
BP192619_at	0.826597	SGN-U499979
EB430155_at	0.824714	SGN-U489962
C7021_at	0.819754	SGN-U431452
DV162341_at	0.8093783	SGN-U499415
EB442811_at	0.808923	SGN-U423837
C2906_at	0.8056863	SGN-U439724
C11357_at	0.802113	SGN-U424042

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