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Expression Template: EB679797_at

Template Basic Information

Template name:	EB679797_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U442726
External db links:	GenBank: EB679797

Annotations for unigene SGN-U442726 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147770378\|emb\|CAN78155.1\|	387	6e-144	61.11	957 bp (57.6%)	2
Description:	hypothetical protein [Vitis vinifera]
arabidopsis	blastx	At5G07850.1	338	6e-123	52.85	981 bp (59.1%)	2
Description:	transferase family protein \| chr5:2508918-2510504 FORWARD
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
EB679797_at_probe_01	PM	data not available	data not available	1
EB679797_at_probe_02	PM	data not available	data not available	1
EB679797_at_probe_03	PM	data not available	data not available	1
EB679797_at_probe_04	PM	data not available	data not available	1
EB679797_at_probe_05	PM	data not available	data not available	1
EB679797_at_probe_06	PM	data not available	data not available	1
EB679797_at_probe_07	PM	data not available	data not available	1
EB679797_at_probe_08	PM	data not available	data not available	1
EB679797_at_probe_09	PM	data not available	data not available	1
EB679797_at_probe_10	PM	data not available	data not available	1
EB679797_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	5.69	5.76	0.53	0.09
	TobEA vegetative shoot apex	shoot apex	8	8	4.34	4.56	0.63	0.15
	TobEA closed bud	flower bud	5	5	5.08	5.11	0.42	0.08
	TobEA open bud	flower bud	5	5	5.38	5.53	0.31	0.06
	TobEA cotyledons	cotyledon	5	5	5.24	5.26	0.34	0.06
	TobEA flower	flower	5	5	5.99	5.98	0.39	0.07
	TobEA lower stem	stem internode	5	5	7.16	7.12	0.55	0.08
	TobEA upper stem	stem internode	5	5	7.69	8.94	1.89	0.25
	TobEA cauline leaf	cauline leaf	5	5	4.26	4.12	0.53	0.13
	TobEA early senescent leaf	adult vascular leaf	5	5	5.02	5.31	0.83	0.16
	TobEA late senescent leaf	adult vascular leaf	5	5	5.76	5.75	0.53	0.09
	TobEA mature leaf	adult vascular leaf	5	5	4.77	4.86	0.21	0.04
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	5.34	5.52	0.70	0.13
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	3.84	4.45	1.60	0.42
	TobEA young leaf	juvenile vascular leaf	5	5	4.11	4.54	1.26	0.31
	TobEA mature root	root	5	5	10.36	10.42	0.22	0.02
	TobEA young root	root	6	6	10.20	10.04	0.54	0.05
	TobEA seed	seed	6	6	6.35	6.32	0.45	0.07
	TobEA young shoot	shoot system	5	5	4.75	5.42	1.84	0.39

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 145.CEL	6.1272388	0.002	P
	Atlas 144.CEL	5.34353	2e-4	P
	Atlas 146.CEL	5.7600775	0.004	P
	Atlas 143.CEL	6.2324915	0.001	P
	Atlas 147.CEL	4.980563	2e-4	P
TobEA vegetative shoot apex	Atlas 246.CEL	4.7487745	0.056	M
	Atlas 58.CEL	3.8167996	0.246	A
	Atlas 247.CEL	3.2294405	0.171	A
	Atlas 250.CEL	5.1187434	0.011	P
	Atlas 61.CEL	4.6207337	0.046	P
	Atlas 248.CEL	4.4945	0.038	P
	Atlas 249.CEL	3.8800638	0.011	P
	Atlas 59.CEL	4.787375	0.095	A
TobEA closed bud	Atlas 163.CEL	5.106736	0.002	P
	Atlas 195.CEL	5.6350393	7e-4	P
	Atlas 173.CEL	4.6172457	0.046	P
	Atlas 199.CEL	4.7282968	0.019	P
	Atlas 161.CEL	5.311022	0.011	P
TobEA open bud	Atlas 169.CEL	5.372977	0.112	A
	Atlas 159.CEL	5.530981	2e-4	P
	Atlas 244.CEL	4.849003	0.046	P
	Atlas 167.CEL	5.5502267	0.011	P
	Atlas 171.CEL	5.6163664	0.001	P
TobEA cotyledons	Atlas 71.CEL	5.6197844	0.004	P
	Atlas 75.CEL	5.0878963	0.366	A
	Atlas 74.CEL	5.262489	0.112	A
	Atlas 69.CEL	4.751581	0.068	A
	Atlas 70.CEL	5.4762635	0.081	A
TobEA flower	Atlas 198.CEL	5.5248013	0.003	P
	Atlas 158.CEL	5.7894692	0.011	P
	Atlas 165.CEL	6.576953	0.003	P
	Atlas 166.CEL	5.9845195	0.001	P
	Atlas 197.CEL	6.068895	0.014	P
TobEA lower stem	Atlas 174.CEL	7.120356	0.002	P
	Atlas 164.CEL	6.5128117	7e-4	P
	Atlas 172.CEL	7.7641363	2e-4	P
	Atlas 200.CEL	7.644744	2e-4	P
	Atlas 245.CEL	6.747738	2e-4	P
TobEA upper stem	Atlas 162.CEL	9.015705	2e-4	P
	Atlas 170.CEL	8.941079	2e-4	P
	Atlas 196.CEL	5.428211	0.008	P
	Atlas 168.CEL	9.21586	2e-4	P
	Atlas 160.CEL	5.827899	0.002	P
TobEA cauline leaf	Atlas 229.CEL	4.681569	0.081	A
	Atlas 231.CEL	3.8024285	0.195	A
	Atlas 233.CEL	4.950245	0.068	A
	Atlas 237.CEL	3.753458	0.095	A
	Atlas 235.CEL	4.1204457	0.112	A
TobEA early senescent leaf	Atlas 182.CEL	4.8213105	0.024	P
	Atlas 183.CEL	5.306288	0.246	A
	Atlas 191.CEL	5.9095063	0.011	P
	Atlas 187.CEL	5.3552527	0.466	A
	Atlas 175.CEL	3.7097661	0.081	A
TobEA late senescent leaf	Atlas 178.CEL	6.4432187	0.002	P
	Atlas 190.CEL	5.753507	0.195	A
	Atlas 179.CEL	6.014904	0.081	A
	Atlas 186.CEL	5.5595975	0.030	P
	Atlas 194.CEL	5.02793	0.014	P
TobEA mature leaf	Atlas 96.CEL	4.5266256	0.219	A
	Atlas 94.CEL	4.9149466	0.014	P
	Atlas 97.CEL	4.559097	0.130	A
	Atlas 93.CEL	4.8623614	0.003	P
	Atlas 95.CEL	4.9769416	0.046	P
TobEA mid/early senescent leaf	Atlas 188.CEL	5.521764	0.195	A
	Atlas 181.CEL	5.982303	0.130	A
	Atlas 184.CEL	5.323924	0.081	A
	Atlas 176.CEL	5.731758	0.024	P
	Atlas 192.CEL	4.1630154	0.046	P
TobEA mid/late senescent leaf	Atlas 185.CEL	1.7974238	0.500	A
	Atlas 177.CEL	4.7594433	0.112	A
	Atlas 193.CEL	4.448004	0.046	P
	Atlas 180.CEL	2.550281	0.568	A
	Atlas 189.CEL	5.623673	0.068	A
TobEA young leaf	Atlas 53.CEL	5.1078095	0.038	P
	Atlas 54.CEL	4.4169374	0.046	P
	Atlas 57.CEL	4.53716	0.024	P
	Atlas 56.CEL	1.8999751	0.534	A
	Atlas 55.CEL	4.5818872	0.019	P
TobEA mature root	Atlas 66.CEL	10.574486	2e-4	P
	Atlas 65.CEL	10.459058	2e-4	P
	Atlas 63.CEL	9.997029	2e-4	P
	Atlas 64.CEL	10.348113	2e-4	P
	Atlas 67.CEL	10.417535	2e-4	P
TobEA young root	Atlas 39.CEL	9.753406	2e-4	P
	Atlas 44.CEL	10.882073	2e-4	P
	Atlas 42.CEL	9.93229	2e-4	P
	Atlas 40.CEL	10.826886	2e-4	P
	Atlas 41.CEL	9.639672	2e-4	P
	Atlas 43.CEL	10.151165	2e-4	P
TobEA seed	Atlas 76.CEL	5.892839	2e-4	P
	Atlas 98.CEL	6.4246674	0.019	P
	Atlas 77.CEL	7.1264687	7e-4	P
	Atlas 79.CEL	6.467735	0.011	P
	Atlas 78.CEL	5.975366	0.008	P
	Atlas 99.CEL	6.2082663	2e-4	P
TobEA young shoot	Atlas 88.CEL	5.03003	0.195	A
	Atlas 90.CEL	5.6748195	0.006	P
	Atlas 86.CEL	6.081552	0.011	P
	Atlas 89.CEL	5.4216633	0.030	P
	Atlas 87.CEL	1.5249387	0.219	A

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (9 templates correlated)

Template	Pearson	Internal Mapping
C1443_at	0.8213542	SGN-U447285
DW003611_s_at	0.8188318	SGN-U447021
BP532773_at	0.8115878	SGN-U462990
EB444556_at	0.8104567	SGN-U447021
C4650_at	0.8097885	SGN-U427013
EB447067_s_at	0.8088942	SGN-U445653
C4293_at	0.8043278	SGN-U434202
EB683428_at	0.8023182	SGN-U457319
EB444556_s_at	0.8022414	SGN-U447021

Correlation Type:

Negative correlations (54 templates correlated)

Template	Pearson	Internal Mapping
C2917_at	-0.877022	SGN-U422948
C5375_at	-0.8648835	SGN-U451421
C5931_at	-0.8576144	SGN-U425504
EB444218_s_at	-0.8527804	SGN-U443291
C2158_at	-0.8491076	SGN-U429531
C6574_s_at	-0.8477327	SGN-U439992
C11547_at	-0.843676	SGN-U439221
EB441066_s_at	-0.8348206	SGN-U461563
C4009_s_at	-0.8332411	SGN-U429786
EB432845_at	-0.8300605	SGN-U447664
C786_at	-0.8293339	SGN-U435764
TT10_B20_at	-0.8288862	SGN-U451421
EB679385_at	-0.8251602	SGN-U473012
C2642_at	-0.8244324	SGN-U424422
C413_at	-0.8243618	SGN-U441808
EB441066_at	-0.822149	SGN-U461563
EB442842_x_at	-0.8212803	SGN-U429786
C2966_at	-0.8200995	SGN-U448857
C6574_at	-0.8189834	SGN-U439992
C805_at	-0.8186346	SGN-U448008
C2027_at	-0.81836	No available
C2027_x_at	-0.8183322	No available
C10530_at	-0.8159674	No available
C2290_at	-0.8150287	SGN-U422315
C4009_at	-0.8124877	SGN-U429786
CV016108_at	-0.8123831	SGN-U442744
EB425182_s_at	-0.8110531	SGN-U463529
C2956_at	-0.8107884	SGN-U450030
C6009_s_at	-0.8106249	SGN-U442673
TT50_G13_at	-0.8094154	SGN-U440553
C2630_at	-0.8086475	SGN-U429233
AJ632875_s_at	-0.8080997	SGN-U446820
C5241_at	-0.808093	SGN-U451422
C3085_s_at	-0.8078863	SGN-U423703
TT22_H22_at	-0.8078223	SGN-U447664
TT08_A01_at	-0.8063942	SGN-U491040
C5308_at	-0.806259	SGN-U437594
C378_s_at	-0.8059852	SGN-U445935
C10960_s_at	-0.8051448	SGN-U450024
EB448674_s_at	-0.8047425	SGN-U447664
C4020_at	-0.8044143	SGN-U443308
EB449953_at	-0.8042064	SGN-U422797
C10434_at	-0.803965	SGN-U438327
C6558_at	-0.8029217	SGN-U433249
C2799_at	-0.8026452	SGN-U436902
AB001542_s_at	-0.8024712	SGN-U443308
C7198_at	-0.8022973	SGN-U445326
TT24_N11_s_at	-0.8018727	SGN-U469900
C5866_at	-0.8018438	SGN-U430829
TT30_E03_at	-0.8009054	SGN-U433920
EB441430_at	-0.8003917	SGN-U454745
TT23_K19_at	-0.8003177	SGN-U484333
C6308_at	-0.8002745	SGN-U431631
C5884_at	-0.8001865	SGN-U448330

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