Sol Genomics Network

clone(s) in cart (order)

Old browser version detected

This site is optimized for modern web browsers

Please upgrade your browser

Sorry!, some features may not work in outdated browsers

Sol Genomics Network

Search
- Organisms
- Loci & Genes
- Genome features
- Expression
- Accessions and Plots
- QTLs
- Markers
- BACs
- Unigenes
- ESTs and libraries
- Gene Families
- Insitu database
- Images
- People
- FAQ
Maps
- All Maps
- The New Comparative Viewer
- Comparative Viewer
- Submit a map
- Tomato
- Tomato-EXPEN 2000
- Tomato-Kazusa/SolCAP
- Tomato QTLs
- Tomato physical map
- Tomato FPC contig map
- Tomato IL map
- Tomato FISH map
- Tomato AGP map
- Pepper
- Pepper COSII map
- Pepper-AC99
- Pepper-FA03
- Eggplant
- Eggplant COSII map
- Eggplant-LXM 2002
- More Maps
- Potato-TXB 1992
- Tobacco SSR 2007
- Arabidopsis COSII
Genomes
- Sequenced Accessions
- Completed Genomes
- Tomato
- Potato
- Pepper
- Eggplant
- Solanum pennellii
- Solanum lycopersicoides
- Solanum pimpinellifolium
- Solanum lycopersicum var. cerasiforme
- Iochroma cyaneum
- Draft Genomes
- Nicotiana attenuata
- Nicotiana benthamiana
- Nicotiana tabacum
- Petunia axillaris
- Petunia inflata
- Solanum chilense
- Coffea humblotiana
- Resequencing projects
- Solanum lycopersicum inbreds
- 150 Tomato Genome Resequencing Project
- BGI Tomato 360 genomes
- Varitome Project
Projects
Tools
- Sequence Analysis
- BLAST
- VIGS Tool
- Alignment Analyzer
- Tree Browser
- Motif Finder
- Mapping
- Genome Browser (Jbrowse)
- SolBrowse Comparative genome viewer
- Comparative Map Viewer
- CAPS Designer
- solQTL: QTL Mapping
- Molecular Biology
- In Silico PCR
- Tomato Expression Atlas (TEA)
- Tomato Expression Database (TED)
- Systems Biology
- SolCyc Biochemical Pathways
- Coffee Interactomic Data
- SGN Ontology Browser
- Breeder Tools
- Breeders Toolbox
- Bulk Query
- FTP Site
- Download Genome Sequences
- Download Gene Sequences
- Clones, Arrays, Unigenes and BACs
- Unigene Converter
About
- About
- Contact
- Cite SGN
- Links
- Help
- FAQ
- Become SGN Editor
- Forum
- FTP data
- SlideShare
- Twitter
- Facebook

Advanced

This site uses cookies to provide logins and other features. Please accept the use of cookies by clicking Accept.

Expression Template: EB679681_at

Template Basic Information

Template name:	EB679681_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U464896
External db links:	GenBank: EB679681

Annotations for unigene SGN-U464896 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|75218951\|sp\|O04235\|SSRP1_VICFA	68.6	1e-21	73.81	126 bp (14.5%)	1
Description:	FACT
arabidopsis	blastx	At3G28730.1	59.3	5e-16	59.52	126 bp (14.5%)	1
Description:	Symbols: SSRP1, NFD, ATHMG \| ATHMG (HIGH MOBILITY GROUP, STRUCTURE-SPECIFIC RECOGNITION PROTEI&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
EB679681_at_probe_01	PM	data not available	data not available	1
EB679681_at_probe_02	PM	data not available	data not available	1
EB679681_at_probe_03	PM	data not available	data not available	1
EB679681_at_probe_04	PM	data not available	data not available	1
EB679681_at_probe_05	PM	data not available	data not available	1
EB679681_at_probe_06	PM	data not available	data not available	1
EB679681_at_probe_07	PM	data not available	data not available	1
EB679681_at_probe_08	PM	data not available	data not available	1
EB679681_at_probe_09	PM	data not available	data not available	1
EB679681_at_probe_10	PM	data not available	data not available	1
EB679681_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	7.56	7.59	0.13	0.02
	TobEA vegetative shoot apex	shoot apex	8	8	7.05	7.07	0.33	0.05
	TobEA closed bud	flower bud	5	5	6.86	6.84	0.22	0.03
	TobEA open bud	flower bud	5	5	6.49	6.48	0.45	0.07
	TobEA cotyledons	cotyledon	5	5	6.86	6.88	0.12	0.02
	TobEA flower	flower	5	5	6.95	6.85	0.24	0.03
	TobEA lower stem	stem internode	5	5	7.13	7.06	0.17	0.02
	TobEA upper stem	stem internode	5	5	6.35	6.48	0.41	0.07
	TobEA cauline leaf	cauline leaf	5	5	6.41	6.30	0.27	0.04
	TobEA early senescent leaf	adult vascular leaf	5	5	7.02	6.93	0.72	0.10
	TobEA late senescent leaf	adult vascular leaf	5	5	7.27	6.98	0.50	0.07
	TobEA mature leaf	adult vascular leaf	5	5	7.11	7.04	0.24	0.03
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	6.77	6.90	0.47	0.07
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	6.76	6.67	0.67	0.10
	TobEA young leaf	juvenile vascular leaf	5	5	6.88	6.84	0.28	0.04
	TobEA mature root	root	5	5	7.00	6.93	0.31	0.04
	TobEA young root	root	6	6	6.67	6.80	0.69	0.10
	TobEA seed	seed	6	6	8.16	8.21	0.24	0.03
	TobEA young shoot	shoot system	5	5	6.79	6.87	0.25	0.04

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 145.CEL	7.358559	2e-4	P
	Atlas 147.CEL	7.585652	2e-4	P
	Atlas 143.CEL	7.514684	2e-4	P
	Atlas 144.CEL	7.614697	2e-4	P
	Atlas 146.CEL	7.7072062	2e-4	P
TobEA vegetative shoot apex	Atlas 249.CEL	7.3008065	2e-4	P
	Atlas 250.CEL	7.4159193	2e-4	P
	Atlas 61.CEL	6.9201097	2e-4	P
	Atlas 246.CEL	7.383261	2e-4	P
	Atlas 247.CEL	7.0573225	2e-4	P
	Atlas 248.CEL	7.079575	2e-4	P
	Atlas 58.CEL	6.8073483	2e-4	P
	Atlas 59.CEL	6.4211373	2e-4	P
TobEA closed bud	Atlas 195.CEL	7.175307	2e-4	P
	Atlas 199.CEL	6.837524	2e-4	P
	Atlas 161.CEL	6.65523	7e-4	P
	Atlas 173.CEL	6.668533	2e-4	P
	Atlas 163.CEL	6.9551077	2e-4	P
TobEA open bud	Atlas 159.CEL	6.1286473	2e-4	P
	Atlas 167.CEL	6.787153	2e-4	P
	Atlas 171.CEL	7.073782	2e-4	P
	Atlas 244.CEL	5.989489	2e-4	P
	Atlas 169.CEL	6.481656	2e-4	P
TobEA cotyledons	Atlas 69.CEL	6.721619	2e-4	P
	Atlas 71.CEL	6.9483995	2e-4	P
	Atlas 74.CEL	7.001308	0.001	P
	Atlas 70.CEL	6.8804007	2e-4	P
	Atlas 75.CEL	6.763441	2e-4	P
TobEA flower	Atlas 165.CEL	7.1984577	2e-4	P
	Atlas 158.CEL	6.7737236	2e-4	P
	Atlas 198.CEL	6.8517766	2e-4	P
	Atlas 166.CEL	6.7203135	2e-4	P
	Atlas 197.CEL	7.2128634	2e-4	P
TobEA lower stem	Atlas 174.CEL	6.963976	2e-4	P
	Atlas 164.CEL	7.0615916	2e-4	P
	Atlas 200.CEL	7.3271537	2e-4	P
	Atlas 245.CEL	7.3066263	2e-4	P
	Atlas 172.CEL	6.9977174	7e-4	P
TobEA upper stem	Atlas 168.CEL	6.5959344	2e-4	P
	Atlas 170.CEL	6.790113	7e-4	P
	Atlas 160.CEL	5.732349	2e-4	P
	Atlas 162.CEL	6.1664343	0.004	P
	Atlas 196.CEL	6.4807563	2e-4	P
TobEA cauline leaf	Atlas 237.CEL	6.275794	2e-4	P
	Atlas 231.CEL	6.121834	7e-4	P
	Atlas 229.CEL	6.3035874	2e-4	P
	Atlas 235.CEL	6.489032	2e-4	P
	Atlas 233.CEL	6.8363256	2e-4	P
TobEA early senescent leaf	Atlas 175.CEL	6.3317647	2e-4	P
	Atlas 183.CEL	6.9307666	0.008	P
	Atlas 182.CEL	6.353659	2e-4	P
	Atlas 191.CEL	7.966945	2e-4	P
	Atlas 187.CEL	7.5000534	2e-4	P
TobEA late senescent leaf	Atlas 186.CEL	6.8793535	0.001	P
	Atlas 179.CEL	7.8805933	2e-4	P
	Atlas 194.CEL	6.981009	2e-4	P
	Atlas 178.CEL	6.8694305	7e-4	P
	Atlas 190.CEL	7.7360883	2e-4	P
TobEA mature leaf	Atlas 94.CEL	7.0380816	2e-4	P
	Atlas 95.CEL	6.9268074	0.001	P
	Atlas 93.CEL	7.5098295	2e-4	P
	Atlas 96.CEL	6.9282837	2e-4	P
	Atlas 97.CEL	7.1398373	2e-4	P
TobEA mid/early senescent leaf	Atlas 184.CEL	5.9926796	0.011	P
	Atlas 176.CEL	6.8967314	2e-4	P
	Atlas 188.CEL	6.9750896	0.008	P
	Atlas 181.CEL	7.2362933	0.003	P
	Atlas 192.CEL	6.7623887	2e-4	P
TobEA mid/late senescent leaf	Atlas 177.CEL	5.9954457	7e-4	P
	Atlas 189.CEL	7.4582634	0.001	P
	Atlas 180.CEL	6.6700444	0.024	P
	Atlas 185.CEL	7.4366207	0.002	P
	Atlas 193.CEL	6.2420297	2e-4	P
TobEA young leaf	Atlas 56.CEL	6.8385825	2e-4	P
	Atlas 57.CEL	7.365659	2e-4	P
	Atlas 53.CEL	6.6861005	2e-4	P
	Atlas 54.CEL	6.6680884	2e-4	P
	Atlas 55.CEL	6.8546095	2e-4	P
TobEA mature root	Atlas 67.CEL	6.9255233	2e-4	P
	Atlas 64.CEL	6.783818	2e-4	P
	Atlas 65.CEL	7.0269694	2e-4	P
	Atlas 63.CEL	7.5194163	2e-4	P
	Atlas 66.CEL	6.7636623	2e-4	P
TobEA young root	Atlas 40.CEL	6.5147986	2e-4	P
	Atlas 43.CEL	5.4055886	2e-4	P
	Atlas 39.CEL	7.2159543	2e-4	P
	Atlas 44.CEL	6.5875354	2e-4	P
	Atlas 41.CEL	7.265636	2e-4	P
	Atlas 42.CEL	7.014004	2e-4	P
TobEA seed	Atlas 76.CEL	7.7581987	2e-4	P
	Atlas 77.CEL	8.082468	2e-4	P
	Atlas 79.CEL	8.463108	2e-4	P
	Atlas 99.CEL	8.254209	2e-4	P
	Atlas 78.CEL	8.260639	2e-4	P
	Atlas 98.CEL	8.161975	2e-4	P
TobEA young shoot	Atlas 89.CEL	6.427316	0.001	P
	Atlas 90.CEL	6.6340456	0.002	P
	Atlas 88.CEL	6.9795456	2e-4	P
	Atlas 86.CEL	6.871166	7e-4	P
	Atlas 87.CEL	7.0378556	2e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (2 templates correlated)

Template	Pearson	Internal Mapping
DV159907_at	0.8271821	SGN-U461378
AJ717999_s_at	0.8183922	SGN-U444480

Your Lists

Public Lists

List Contents

List Validation Report: Failed

Elements not found:

Optional: Add Missing Accessions to A List

Mismatched case

Click the Adjust Case button to align the case in the list with what is in the database.

Multiple mismatched case

Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.

List elements matching a synonym

Multiple synonym matches

Multiple synonym matches have to be resolved manually. Contact database administrators if necessary.

Fuzzy Search Results

Synonym Search Results

Create a New List from Unique Names:

Available Seedlots

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Create a New List from Selected Seedlots:

Manage Seedlots

Your Datasets

Public Datasets

Dataset Contents

Dataset Validation Failed

Elements not found:

Your Calendar

Having trouble viewing events on the calendar?
Are you associated with the breeding program you are interested in viewing?

Calendar Permissions

Add New Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

http://www.

Event Info

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

Edit Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

Login

Show Password

Forgot Username

If you've forgotten your username, enter your email address below. An email will be sent with any account username(s) associated with your email address.

Email Address

Reset Password

To reset your password, please enter your email address. A link will be sent to that address with a link that will enable you to reset your password.

Email Address

Create New User

Notice

Before creating a new account, please check if you already have an account using the directory search.
A link will be emailed to you. Please click on it to activate the account.
All fields are required.

First Name:

Last Name:

Organization:

Username:

Username must be at least 7 characters long.

Password:

Password must be at least 7 characters long and different from your username.

Confirm Password:

Password must be at least 7 characters long and different from your username.

Email Address:

An email will be sent to this address requiring you to confirm its receipt to activate your account.