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Expression Template: EB677343_s_at

Template Basic Information

Template name:	EB677343_s_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U436932
External db links:	GenBank: EB677343

Annotations for unigene SGN-U436932 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157347822\|emb\|CAO22409.1\|	460	1e-127	74.71	771 bp (60.6%)	2
Description:	unnamed
arabidopsis	blastx	At3G62970.1	419	2e-117	66.15	771 bp (60.6%)	2
Description:	protein binding / zinc ion binding \| chr3:23281611-23283673 FORWARD
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
EB677343_s_at_probe_01	PM	data not available	data not available	1
EB677343_s_at_probe_02	PM	data not available	data not available	1
EB677343_s_at_probe_03	PM	data not available	data not available	1
EB677343_s_at_probe_04	PM	data not available	data not available	1
EB677343_s_at_probe_05	PM	data not available	data not available	1
EB677343_s_at_probe_06	PM	data not available	data not available	1
EB677343_s_at_probe_07	PM	data not available	data not available	1
EB677343_s_at_probe_08	PM	data not available	data not available	1
EB677343_s_at_probe_09	PM	data not available	data not available	1
EB677343_s_at_probe_10	PM	data not available	data not available	1
EB677343_s_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	7.81	8.05	0.44	0.06
	TobEA vegetative shoot apex	shoot apex	8	8	7.52	7.50	0.39	0.05
	TobEA closed bud	flower bud	5	5	8.39	8.35	0.12	0.01
	TobEA open bud	flower bud	5	5	8.49	8.51	0.18	0.02
	TobEA cotyledons	cotyledon	5	5	7.70	7.82	0.34	0.04
	TobEA flower	flower	5	5	8.87	8.81	0.19	0.02
	TobEA lower stem	stem internode	5	5	8.13	8.14	0.07	0.01
	TobEA upper stem	stem internode	5	5	8.55	8.67	0.34	0.04
	TobEA cauline leaf	cauline leaf	5	5	7.66	7.66	0.15	0.02
	TobEA early senescent leaf	adult vascular leaf	5	5	8.13	8.23	0.75	0.09
	TobEA late senescent leaf	adult vascular leaf	5	5	8.37	8.32	0.19	0.02
	TobEA mature leaf	adult vascular leaf	5	5	8.35	8.39	0.21	0.02
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	8.04	8.02	0.49	0.06
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	8.17	8.21	0.54	0.07
	TobEA young leaf	juvenile vascular leaf	5	5	7.19	7.36	0.50	0.07
	TobEA mature root	root	5	5	7.92	7.99	0.21	0.03
	TobEA young root	root	6	6	7.61	7.71	0.52	0.07
	TobEA seed	seed	6	6	7.24	7.27	0.19	0.03
	TobEA young shoot	shoot system	5	5	7.52	7.53	0.29	0.04

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 146.CEL	8.053806	2e-4	P
	Atlas 145.CEL	8.250748	2e-4	P
	Atlas 147.CEL	8.072012	2e-4	P
	Atlas 143.CEL	7.402059	2e-4	P
	Atlas 144.CEL	7.2884073	2e-4	P
TobEA vegetative shoot apex	Atlas 247.CEL	8.121199	2e-4	P
	Atlas 59.CEL	6.8892136	2e-4	P
	Atlas 246.CEL	7.907996	2e-4	P
	Atlas 250.CEL	7.648656	2e-4	P
	Atlas 58.CEL	7.3611403	2e-4	P
	Atlas 248.CEL	7.28686	7e-4	P
	Atlas 249.CEL	7.6483927	2e-4	P
	Atlas 61.CEL	7.315936	2e-4	P
TobEA closed bud	Atlas 195.CEL	8.350705	2e-4	P
	Atlas 199.CEL	8.3502445	2e-4	P
	Atlas 161.CEL	8.584597	2e-4	P
	Atlas 163.CEL	8.246761	2e-4	P
	Atlas 173.CEL	8.402118	2e-4	P
TobEA open bud	Atlas 171.CEL	8.723956	2e-4	P
	Atlas 169.CEL	8.506361	2e-4	P
	Atlas 159.CEL	8.578626	2e-4	P
	Atlas 167.CEL	8.285645	2e-4	P
	Atlas 244.CEL	8.342113	2e-4	P
TobEA cotyledons	Atlas 71.CEL	7.8285666	0.011	P
	Atlas 69.CEL	7.135435	0.006	P
	Atlas 74.CEL	7.821514	7e-4	P
	Atlas 70.CEL	7.690039	2e-4	P
	Atlas 75.CEL	8.034836	2e-4	P
TobEA flower	Atlas 165.CEL	8.681319	2e-4	P
	Atlas 158.CEL	8.754932	2e-4	P
	Atlas 166.CEL	8.809582	2e-4	P
	Atlas 197.CEL	9.154281	2e-4	P
	Atlas 198.CEL	8.937224	2e-4	P
TobEA lower stem	Atlas 164.CEL	8.229276	2e-4	P
	Atlas 172.CEL	8.103552	2e-4	P
	Atlas 245.CEL	8.044191	2e-4	P
	Atlas 174.CEL	8.135327	2e-4	P
	Atlas 200.CEL	8.1558895	2e-4	P
TobEA upper stem	Atlas 160.CEL	8.392862	2e-4	P
	Atlas 168.CEL	8.792792	2e-4	P
	Atlas 196.CEL	8.039965	2e-4	P
	Atlas 162.CEL	8.850809	2e-4	P
	Atlas 170.CEL	8.671123	2e-4	P
TobEA cauline leaf	Atlas 233.CEL	7.8040624	2e-4	P
	Atlas 235.CEL	7.6146936	2e-4	P
	Atlas 229.CEL	7.789743	2e-4	P
	Atlas 231.CEL	7.4387045	2e-4	P
	Atlas 237.CEL	7.656082	2e-4	P
TobEA early senescent leaf	Atlas 175.CEL	7.281845	2e-4	P
	Atlas 183.CEL	8.541279	2e-4	P
	Atlas 187.CEL	9.111132	7e-4	P
	Atlas 191.CEL	8.230274	2e-4	P
	Atlas 182.CEL	7.490809	2e-4	P
TobEA late senescent leaf	Atlas 179.CEL	8.646093	2e-4	P
	Atlas 178.CEL	8.13732	2e-4	P
	Atlas 186.CEL	8.426037	2e-4	P
	Atlas 190.CEL	8.324359	2e-4	P
	Atlas 194.CEL	8.319439	2e-4	P
TobEA mature leaf	Atlas 93.CEL	8.39145	2e-4	P
	Atlas 97.CEL	8.503125	2e-4	P
	Atlas 94.CEL	8.122252	2e-4	P
	Atlas 95.CEL	8.158787	2e-4	P
	Atlas 96.CEL	8.595715	2e-4	P
TobEA mid/early senescent leaf	Atlas 176.CEL	7.4119	2e-4	P
	Atlas 181.CEL	8.182609	2e-4	P
	Atlas 184.CEL	7.8388906	2e-4	P
	Atlas 188.CEL	8.737344	2e-4	P
	Atlas 192.CEL	8.021985	2e-4	P
TobEA mid/late senescent leaf	Atlas 180.CEL	8.636414	7e-4	P
	Atlas 177.CEL	7.267387	2e-4	P
	Atlas 185.CEL	8.206229	2e-4	P
	Atlas 189.CEL	8.536179	2e-4	P
	Atlas 193.CEL	8.19554	2e-4	P
TobEA young leaf	Atlas 55.CEL	7.3557363	2e-4	P
	Atlas 54.CEL	6.303008	2e-4	P
	Atlas 57.CEL	7.320207	2e-4	P
	Atlas 53.CEL	7.495021	7e-4	P
	Atlas 56.CEL	7.4635324	2e-4	P
TobEA mature root	Atlas 65.CEL	8.065449	2e-4	P
	Atlas 63.CEL	7.987341	2e-4	P
	Atlas 64.CEL	7.8835917	2e-4	P
	Atlas 67.CEL	7.5611396	2e-4	P
	Atlas 66.CEL	8.088467	2e-4	P
TobEA young root	Atlas 39.CEL	6.617739	0.014	P
	Atlas 43.CEL	7.639814	2e-4	P
	Atlas 42.CEL	7.7790127	7e-4	P
	Atlas 40.CEL	8.003421	2e-4	P
	Atlas 41.CEL	7.589068	2e-4	P
	Atlas 44.CEL	8.026056	2e-4	P
TobEA seed	Atlas 76.CEL	7.4738207	2e-4	P
	Atlas 79.CEL	7.0215244	0.001	P
	Atlas 98.CEL	7.367741	2e-4	P
	Atlas 78.CEL	7.349068	2e-4	P
	Atlas 99.CEL	7.1887236	2e-4	P
	Atlas 77.CEL	7.0208683	0.001	P
TobEA young shoot	Atlas 87.CEL	7.1285453	7e-4	P
	Atlas 88.CEL	7.901667	7e-4	P
	Atlas 86.CEL	7.639335	2e-4	P
	Atlas 89.CEL	7.5287848	2e-4	P
	Atlas 90.CEL	7.3917127	2e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (6 templates correlated)

Template	Pearson	Internal Mapping
C6510_at	0.8252821	SGN-U444482
C5011_at	0.8117005	SGN-U425046
CV019347_s_at	0.8096097	SGN-U473106
C6407_s_at	0.8055354	SGN-U421784
EB680260_at	0.8024805	SGN-U424316
EB452002_at	0.8012504	SGN-U437305

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