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Expression Template: EB677200_at

Template Basic Information

Template name:	EB677200_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U446126
External db links:	GenBank: EB677200

Annotations for unigene SGN-U446126 (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits (or none blast was used over this dataset)
arabidopsis	blastx	No significant hits (or none blast was used over this dataset)
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
EB677200_at_probe_01	PM	data not available	data not available	1
EB677200_at_probe_02	PM	data not available	data not available	1
EB677200_at_probe_03	PM	data not available	data not available	1
EB677200_at_probe_04	PM	data not available	data not available	1
EB677200_at_probe_05	PM	data not available	data not available	1
EB677200_at_probe_06	PM	data not available	data not available	1
EB677200_at_probe_07	PM	data not available	data not available	1
EB677200_at_probe_08	PM	data not available	data not available	1
EB677200_at_probe_09	PM	data not available	data not available	1
EB677200_at_probe_10	PM	data not available	data not available	1
EB677200_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	8.09	8.06	0.14	0.02
	TobEA vegetative shoot apex	shoot apex	8	8	7.86	7.93	0.29	0.04
	TobEA closed bud	flower bud	5	5	7.72	7.84	0.24	0.03
	TobEA open bud	flower bud	5	5	7.97	8.03	0.18	0.02
	TobEA cotyledons	cotyledon	5	5	6.96	6.93	0.27	0.04
	TobEA flower	flower	5	5	7.64	7.52	0.20	0.03
	TobEA lower stem	stem internode	5	5	7.79	7.83	0.14	0.02
	TobEA upper stem	stem internode	5	5	7.68	7.70	0.21	0.03
	TobEA cauline leaf	cauline leaf	5	5	7.21	7.26	0.13	0.02
	TobEA early senescent leaf	adult vascular leaf	5	5	7.79	7.81	0.47	0.06
	TobEA late senescent leaf	adult vascular leaf	5	5	8.10	8.15	0.37	0.05
	TobEA mature leaf	adult vascular leaf	5	5	7.74	7.70	0.27	0.04
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	7.90	7.70	0.50	0.06
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	8.09	7.98	0.37	0.05
	TobEA young leaf	juvenile vascular leaf	5	5	7.06	6.97	0.19	0.03
	TobEA mature root	root	5	5	8.15	8.26	0.24	0.03
	TobEA young root	root	6	6	8.24	8.23	0.14	0.02
	TobEA seed	seed	6	6	9.36	9.31	0.19	0.02
	TobEA young shoot	shoot system	5	5	6.78	6.79	0.43	0.06

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 147.CEL	8.060049	2e-4	P
	Atlas 143.CEL	8.13302	2e-4	P
	Atlas 144.CEL	7.9258766	2e-4	P
	Atlas 146.CEL	8.316582	2e-4	P
	Atlas 145.CEL	8.038546	2e-4	P
TobEA vegetative shoot apex	Atlas 247.CEL	8.01913	2e-4	P
	Atlas 248.CEL	7.880036	2e-4	P
	Atlas 249.CEL	7.9862967	2e-4	P
	Atlas 59.CEL	7.893056	7e-4	P
	Atlas 246.CEL	8.056677	2e-4	P
	Atlas 250.CEL	7.915314	7e-4	P
	Atlas 58.CEL	7.1659346	2e-4	P
	Atlas 61.CEL	7.948824	7e-4	P
TobEA closed bud	Atlas 161.CEL	7.3327885	2e-4	P
	Atlas 173.CEL	7.835521	2e-4	P
	Atlas 163.CEL	7.644097	2e-4	P
	Atlas 195.CEL	7.8565397	2e-4	P
	Atlas 199.CEL	7.938883	2e-4	P
TobEA open bud	Atlas 169.CEL	8.051033	2e-4	P
	Atlas 244.CEL	7.90654	2e-4	P
	Atlas 171.CEL	8.027023	2e-4	P
	Atlas 159.CEL	7.6906047	2e-4	P
	Atlas 167.CEL	8.160535	2e-4	P
TobEA cotyledons	Atlas 71.CEL	7.317129	0.002	P
	Atlas 70.CEL	6.7286954	0.038	P
	Atlas 74.CEL	6.932309	0.002	P
	Atlas 69.CEL	7.1357265	2e-4	P
	Atlas 75.CEL	6.6866794	7e-4	P
TobEA flower	Atlas 165.CEL	7.8355784	2e-4	P
	Atlas 197.CEL	7.4587045	2e-4	P
	Atlas 198.CEL	7.8738747	2e-4	P
	Atlas 158.CEL	7.517394	2e-4	P
	Atlas 166.CEL	7.4935756	2e-4	P
TobEA lower stem	Atlas 200.CEL	7.867623	2e-4	P
	Atlas 245.CEL	7.833256	2e-4	P
	Atlas 164.CEL	7.9385467	7e-4	P
	Atlas 172.CEL	7.570957	2e-4	P
	Atlas 174.CEL	7.729925	7e-4	P
TobEA upper stem	Atlas 196.CEL	7.9925327	2e-4	P
	Atlas 160.CEL	7.699037	2e-4	P
	Atlas 168.CEL	7.549651	2e-4	P
	Atlas 162.CEL	7.728275	2e-4	P
	Atlas 170.CEL	7.4409876	2e-4	P
TobEA cauline leaf	Atlas 237.CEL	7.3088617	2e-4	P
	Atlas 229.CEL	7.347054	7e-4	P
	Atlas 231.CEL	7.0376916	2e-4	P
	Atlas 235.CEL	7.1085796	7e-4	P
	Atlas 233.CEL	7.257683	7e-4	P
TobEA early senescent leaf	Atlas 175.CEL	7.1850133	2e-4	P
	Atlas 183.CEL	7.805013	2e-4	P
	Atlas 187.CEL	8.362769	2e-4	P
	Atlas 182.CEL	8.095868	2e-4	P
	Atlas 191.CEL	7.510719	7e-4	P
TobEA late senescent leaf	Atlas 179.CEL	8.179358	2e-4	P
	Atlas 194.CEL	8.643732	2e-4	P
	Atlas 178.CEL	7.839003	2e-4	P
	Atlas 186.CEL	7.688364	2e-4	P
	Atlas 190.CEL	8.150775	2e-4	P
TobEA mature leaf	Atlas 95.CEL	7.6572223	2e-4	P
	Atlas 97.CEL	7.354575	2e-4	P
	Atlas 94.CEL	8.025912	2e-4	P
	Atlas 93.CEL	7.9806395	2e-4	P
	Atlas 96.CEL	7.697492	7e-4	P
TobEA mid/early senescent leaf	Atlas 181.CEL	8.739143	2e-4	P
	Atlas 184.CEL	7.525092	2e-4	P
	Atlas 188.CEL	7.9548106	0.001	P
	Atlas 192.CEL	7.591088	2e-4	P
	Atlas 176.CEL	7.699394	2e-4	P
TobEA mid/late senescent leaf	Atlas 177.CEL	7.981889	2e-4	P
	Atlas 185.CEL	7.8354454	0.011	P
	Atlas 189.CEL	8.375701	2e-4	P
	Atlas 193.CEL	8.580709	2e-4	P
	Atlas 180.CEL	7.6911983	2e-4	P
TobEA young leaf	Atlas 53.CEL	7.164048	7e-4	P
	Atlas 56.CEL	6.9722886	0.001	P
	Atlas 54.CEL	7.3377066	2e-4	P
	Atlas 57.CEL	6.904862	2e-4	P
	Atlas 55.CEL	6.9222164	7e-4	P
TobEA mature root	Atlas 67.CEL	8.257689	2e-4	P
	Atlas 63.CEL	8.301621	2e-4	P
	Atlas 64.CEL	8.371789	2e-4	P
	Atlas 65.CEL	7.770754	2e-4	P
	Atlas 66.CEL	8.0622635	2e-4	P
TobEA young root	Atlas 40.CEL	8.143476	2e-4	P
	Atlas 41.CEL	8.418937	2e-4	P
	Atlas 44.CEL	8.094255	7e-4	P
	Atlas 42.CEL	8.312336	2e-4	P
	Atlas 39.CEL	8.370266	2e-4	P
	Atlas 43.CEL	8.106439	2e-4	P
TobEA seed	Atlas 78.CEL	9.649585	2e-4	P
	Atlas 79.CEL	9.538039	2e-4	P
	Atlas 77.CEL	9.191786	2e-4	P
	Atlas 98.CEL	9.189336	2e-4	P
	Atlas 99.CEL	9.263498	2e-4	P
	Atlas 76.CEL	9.35493	2e-4	P
TobEA young shoot	Atlas 88.CEL	6.411139	0.006	P
	Atlas 89.CEL	6.27953	0.006	P
	Atlas 90.CEL	7.1630073	7e-4	P
	Atlas 86.CEL	7.236311	7e-4	P
	Atlas 87.CEL	6.793188	2e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (12 templates correlated)

Template	Pearson	Internal Mapping
C5955_s_at	0.8294662	SGN-U429662
C2926_s_at	0.8289935	SGN-U445202
C10145_at	0.8282681	No available
C3969_s_at	0.8180068	SGN-U441446
EB449473_s_at	0.814271	SGN-U440581
EB445518_at	0.8141292	SGN-U446126
EB680900_at	0.811598	SGN-U440257
C6982_at	0.8069476	SGN-U451544
BP531571_at	0.805246	SGN-U445580
C8273_at	0.8021198	SGN-U431247
C1262_s_at	0.8017298	SGN-U448011
BP530176_at	0.8001187	SGN-U456060

Correlation Type:

Negative correlations (11 templates correlated)

Template	Pearson	Internal Mapping
C5617_at	-0.8305833	SGN-U437099
C5737_at	-0.8302288	SGN-U427730
CV019969_x_at	-0.8294562	SGN-U440574
CV020937_s_at	-0.8209966	SGN-U437866
C4151_at	-0.8162042	SGN-U427851
C811_s_at	-0.8151579	SGN-U444875
C8674_at	-0.8145071	SGN-U449576
C9264_at	-0.8113048	SGN-U421231
C2467_at	-0.8038452	SGN-U447126
C4928_s_at	-0.8033662	SGN-U451142
C642_at	-0.8003983	SGN-U437866

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