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Expression Template: EB450715_at

Template Basic Information

Template name:	EB450715_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U468295
External db links:	GenBank: EB450715

Annotations for unigene SGN-U468295 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|688422\|dbj\|BAA05471.1\|	147	9e-34	96.51	258 bp (30.8%)	1
Description:	tumor-related protein [Nicotiana glauca x Nicotiana langsdorffii]
arabidopsis	blastx	At1G62510.1	105	4e-23	67.86	252 bp (30.0%)	1
Description:	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein \| chr1:23140297-23&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
EB450715_at_probe_01	PM	data not available	data not available	1
EB450715_at_probe_02	PM	data not available	data not available	1
EB450715_at_probe_03	PM	data not available	data not available	1
EB450715_at_probe_04	PM	data not available	data not available	1
EB450715_at_probe_05	PM	data not available	data not available	1
EB450715_at_probe_06	PM	data not available	data not available	1
EB450715_at_probe_07	PM	data not available	data not available	1
EB450715_at_probe_08	PM	data not available	data not available	1
EB450715_at_probe_09	PM	data not available	data not available	1
EB450715_at_probe_10	PM	data not available	data not available	1
EB450715_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	2.22	2.05	1.70	0.77
	TobEA vegetative shoot apex	shoot apex	8	8	2.26	2.72	1.62	0.72
	TobEA closed bud	flower bud	5	5	8.52	8.54	0.05	0.01
	TobEA open bud	flower bud	5	5	4.77	4.34	1.03	0.22
	TobEA cotyledons	cotyledon	5	5	3.31	3.12	1.95	0.59
	TobEA flower	flower	5	5	3.85	3.85	0.84	0.22
	TobEA lower stem	stem internode	5	5	11.31	11.46	0.50	0.04
	TobEA upper stem	stem internode	5	5	8.17	9.74	3.24	0.40
	TobEA cauline leaf	cauline leaf	5	5	1.31	0.69	1.59	1.22
	TobEA early senescent leaf	adult vascular leaf	5	5	2.85	2.31	1.68	0.59
	TobEA late senescent leaf	adult vascular leaf	5	5	3.39	3.72	1.55	0.46
	TobEA mature leaf	adult vascular leaf	5	5	2.69	2.80	1.11	0.41
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	2.39	1.87	1.08	0.45
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	2.08	1.68	1.37	0.66
	TobEA young leaf	juvenile vascular leaf	5	5	4.39	4.13	0.44	0.10
	TobEA mature root	root	5	5	8.03	8.22	0.73	0.09
	TobEA young root	root	6	6	7.74	7.76	0.35	0.05
	TobEA seed	seed	6	6	2.16	1.81	1.50	0.69
	TobEA young shoot	shoot system	5	5	2.80	2.67	1.39	0.50

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 144.CEL	4.095716	0.130	A
	Atlas 145.CEL	0.32522365	0.989	A
	Atlas 143.CEL	3.8071802	0.334	A
	Atlas 146.CEL	0.8190349	0.944	A
	Atlas 147.CEL	2.0536523	0.781	A
TobEA vegetative shoot apex	Atlas 58.CEL	2.7963443	0.726	A
	Atlas 248.CEL	2.6451452	0.718	A
	Atlas 250.CEL	1.3719971	0.500	A
	Atlas 59.CEL		0.726	A
	Atlas 246.CEL	3.2933211	0.334	A
	Atlas 247.CEL		0.981	A
	Atlas 61.CEL	3.823112	0.634	A
	Atlas 249.CEL	4.11765	0.166	A
TobEA closed bud	Atlas 195.CEL	8.569634	0.001	P
	Atlas 199.CEL	8.555214	0.003	P
	Atlas 163.CEL	8.537258	0.001	P
	Atlas 161.CEL	8.465614	0.011	P
	Atlas 173.CEL	8.450329	0.008	P
TobEA open bud	Atlas 169.CEL	4.2904835	0.166	A
	Atlas 159.CEL	3.67909	0.195	A
	Atlas 167.CEL	5.222461	0.046	P
	Atlas 171.CEL	6.3344526	0.008	P
	Atlas 244.CEL	4.3402405	0.014	P
TobEA cotyledons	Atlas 74.CEL	0.53681976	0.905	A
	Atlas 75.CEL	5.270427	0.195	A
	Atlas 70.CEL	5.0736303	0.171	A
	Atlas 71.CEL	3.115036	0.666	A
	Atlas 69.CEL	2.5396545	0.829	A
TobEA flower	Atlas 158.CEL	3.4238942	0.219	A
	Atlas 166.CEL	3.8519354	0.304	A
	Atlas 198.CEL	4.697954	0.246	A
	Atlas 165.CEL	2.6862972	0.534	A
	Atlas 197.CEL	4.594822	0.246	A
TobEA lower stem	Atlas 200.CEL	11.506073	2e-4	P
	Atlas 172.CEL	10.456285	2e-4	P
	Atlas 164.CEL	11.763023	2e-4	P
	Atlas 174.CEL	11.376399	2e-4	P
	Atlas 245.CEL	11.455814	2e-4	P
TobEA upper stem	Atlas 162.CEL	11.327916	7e-4	P
	Atlas 170.CEL	10.407885	2e-4	P
	Atlas 196.CEL	4.34833	0.030	P
	Atlas 160.CEL	5.0195956	0.195	A
	Atlas 168.CEL	9.738363	2e-4	P
TobEA cauline leaf	Atlas 229.CEL	0.694891	0.634	A
	Atlas 237.CEL	2.1461315	0.634	A
	Atlas 231.CEL		0.850	A
	Atlas 233.CEL		0.944	A
	Atlas 235.CEL	3.684246	0.274	A
TobEA early senescent leaf	Atlas 175.CEL	5.6730795	0.130	A
	Atlas 182.CEL	2.9954226	0.634	A
	Atlas 183.CEL	1.7784433	0.970	A
	Atlas 187.CEL	1.4827307	0.774	A
	Atlas 191.CEL	2.3066885	0.850	A
TobEA late senescent leaf	Atlas 179.CEL	5.2505317	0.500	A
	Atlas 186.CEL	2.3372767	0.781	A
	Atlas 190.CEL	1.3657794	0.944	A
	Atlas 194.CEL	3.7231998	0.458	A
	Atlas 178.CEL	4.288266	0.500	A
TobEA mature leaf	Atlas 94.CEL	1.6189371	0.829	A
	Atlas 93.CEL	2.7996438	0.534	A
	Atlas 97.CEL	4.0369115	0.130	A
	Atlas 95.CEL	1.5305071	0.781	A
	Atlas 96.CEL	3.474536	0.304	A
TobEA mid/early senescent leaf	Atlas 176.CEL	3.029258	0.534	A
	Atlas 184.CEL	3.9684556	0.800	A
	Atlas 188.CEL	1.872073	0.944	A
	Atlas 192.CEL	1.768408	0.696	A
	Atlas 181.CEL	1.319965	0.960	A
TobEA mid/late senescent leaf	Atlas 180.CEL	1.756802	0.944	A
	Atlas 177.CEL	1.6812	0.805	A
	Atlas 185.CEL	1.1718212	0.888	A
	Atlas 189.CEL	1.2828898	0.981	A
	Atlas 193.CEL	4.49281	0.274	A
TobEA young leaf	Atlas 56.CEL	5.0226083	0.219	A
	Atlas 57.CEL	4.677287	0.500	A
	Atlas 53.CEL	4.12338	0.466	A
	Atlas 54.CEL	4.1291013	0.304	A
	Atlas 55.CEL	3.9895809	0.081	A
TobEA mature root	Atlas 65.CEL	8.086803	2e-4	P
	Atlas 66.CEL	8.426437	7e-4	P
	Atlas 67.CEL	8.639647	0.002	P
	Atlas 63.CEL	6.7749634	7e-4	P
	Atlas 64.CEL	8.218421	0.002	P
TobEA young root	Atlas 42.CEL	7.519215	0.002	P
	Atlas 43.CEL	8.223777	0.002	P
	Atlas 40.CEL	7.7404866	0.008	P
	Atlas 44.CEL	7.777745	0.002	P
	Atlas 39.CEL	7.9553947	7e-4	P
	Atlas 41.CEL	7.2142186	2e-4	P
TobEA seed	Atlas 78.CEL	1.0319585	0.829	A
	Atlas 98.CEL	2.5027199	0.601	A
	Atlas 77.CEL	4.9658685	0.081	A
	Atlas 76.CEL	2.0707276	0.666	A
	Atlas 79.CEL	0.8655915	0.992	A
	Atlas 99.CEL	1.5525666	0.432	A
TobEA young shoot	Atlas 88.CEL	2.6358473	0.666	A
	Atlas 87.CEL	0.938295	0.829	A
	Atlas 86.CEL	4.847368	0.195	A
	Atlas 89.CEL	2.8947613	0.399	A
	Atlas 90.CEL	2.6692245	0.534	A

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (21 templates correlated)

Template	Pearson	Internal Mapping
CV021418_at	0.8722178	SGN-U439514
C3893_at	0.8611219	SGN-U439514
C3542_at	0.852381	SGN-U441880
C2609_at	0.8493362	SGN-U448769
TT33_M13_at	0.8417269	SGN-U422023
C6388_x_at	0.8416474	SGN-U439145
C4027_s_at	0.8326908	SGN-U428942
EB450429_at	0.819309	SGN-U422908
C3580_x_at	0.8186114	SGN-U430553
C6388_at	0.8161976	SGN-U439145
TT07_M15_at	0.8139858	SGN-U488834
C49_at	0.8120417	SGN-U421462
C4255_at	0.8107198	SGN-U438578
C3580_at	0.8102515	SGN-U430553
C3001_at	0.8088595	SGN-U444155
C4027_at	0.8058777	SGN-U428942
C9448_at	0.8053417	SGN-U435894
EB445166_at	0.8024741	SGN-U423423
C3689_at	0.8014885	SGN-U443925
C3973_at	0.8013446	SGN-U444435
EB428913_at	0.8001604	SGN-U474331

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