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Expression Template: EB447999_at

Template Basic Information

Template name:	EB447999_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U481044
External db links:	GenBank: EB447999

Annotations for unigene SGN-U481044 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157355761\|emb\|CAO49586.1\|	293	1e-77	71.78	606 bp (75.9%)	3
Description:	unnamed
arabidopsis	blastx	At4G20350.1	165	3e-41	60.54	429 bp (53.8%)	3
Description:	similar to Picornavirus 2B protein [Medicago truncatula] (GB:ABE88460.1) \| chr4:10988741-10989&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
EB447999_at_probe_01	PM	data not available	data not available	1
EB447999_at_probe_02	PM	data not available	data not available	1
EB447999_at_probe_03	PM	data not available	data not available	1
EB447999_at_probe_04	PM	data not available	data not available	1
EB447999_at_probe_05	PM	data not available	data not available	1
EB447999_at_probe_06	PM	data not available	data not available	1
EB447999_at_probe_07	PM	data not available	data not available	1
EB447999_at_probe_08	PM	data not available	data not available	1
EB447999_at_probe_09	PM	data not available	data not available	1
EB447999_at_probe_10	PM	data not available	data not available	1
EB447999_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	7.94	7.97	0.15	0.02
	TobEA vegetative shoot apex	shoot apex	8	8	7.38	7.36	0.25	0.03
	TobEA closed bud	flower bud	5	5	7.94	7.86	0.18	0.02
	TobEA open bud	flower bud	5	5	7.75	7.71	0.25	0.03
	TobEA cotyledons	cotyledon	5	5	6.95	6.90	0.26	0.04
	TobEA flower	flower	5	5	7.56	7.59	0.16	0.02
	TobEA lower stem	stem internode	5	5	7.48	7.54	0.19	0.03
	TobEA upper stem	stem internode	5	5	7.20	7.12	0.30	0.04
	TobEA cauline leaf	cauline leaf	5	5	7.43	7.39	0.14	0.02
	TobEA early senescent leaf	adult vascular leaf	5	5	7.52	7.53	0.30	0.04
	TobEA late senescent leaf	adult vascular leaf	5	5	7.34	7.39	0.39	0.05
	TobEA mature leaf	adult vascular leaf	5	5	7.57	7.45	0.27	0.04
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	7.42	7.33	0.35	0.05
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	7.53	7.44	0.19	0.03
	TobEA young leaf	juvenile vascular leaf	5	5	7.39	7.41	0.22	0.03
	TobEA mature root	root	5	5	7.05	7.12	0.39	0.05
	TobEA young root	root	6	6	6.88	6.88	0.18	0.03
	TobEA seed	seed	6	6	8.09	8.02	0.19	0.02
	TobEA young shoot	shoot system	5	5	7.02	6.94	0.32	0.05

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 144.CEL	7.772014	2e-4	P
	Atlas 145.CEL	8.0239	2e-4	P
	Atlas 143.CEL	7.9663367	2e-4	P
	Atlas 146.CEL	8.142423	2e-4	P
	Atlas 147.CEL	7.8185554	2e-4	P
TobEA vegetative shoot apex	Atlas 247.CEL	7.2398725	2e-4	P
	Atlas 248.CEL	7.110275	2e-4	P
	Atlas 249.CEL	7.6159964	2e-4	P
	Atlas 58.CEL	7.2614946	2e-4	P
	Atlas 59.CEL	7.0347624	2e-4	P
	Atlas 246.CEL	7.702577	2e-4	P
	Atlas 250.CEL	7.593313	2e-4	P
	Atlas 61.CEL	7.4655056	2e-4	P
TobEA closed bud	Atlas 173.CEL	8.253134	2e-4	P
	Atlas 163.CEL	7.8058524	2e-4	P
	Atlas 195.CEL	7.8543143	2e-4	P
	Atlas 199.CEL	7.9114585	2e-4	P
	Atlas 161.CEL	7.863133	7e-4	P
TobEA open bud	Atlas 244.CEL	7.3707714	2e-4	P
	Atlas 159.CEL	7.710434	2e-4	P
	Atlas 167.CEL	7.7091794	2e-4	P
	Atlas 169.CEL	8.048796	2e-4	P
	Atlas 171.CEL	7.887156	2e-4	P
TobEA cotyledons	Atlas 70.CEL	6.5891333	2e-4	P
	Atlas 75.CEL	6.901003	0.006	P
	Atlas 69.CEL	7.1965203	2e-4	P
	Atlas 74.CEL	6.8663826	2e-4	P
	Atlas 71.CEL	7.195093	2e-4	P
TobEA flower	Atlas 197.CEL	7.5917697	2e-4	P
	Atlas 198.CEL	7.694648	2e-4	P
	Atlas 158.CEL	7.44932	2e-4	P
	Atlas 166.CEL	7.338109	7e-4	P
	Atlas 165.CEL	7.709112	2e-4	P
TobEA lower stem	Atlas 172.CEL	7.6812162	2e-4	P
	Atlas 174.CEL	7.188168	7e-4	P
	Atlas 245.CEL	7.5906305	2e-4	P
	Atlas 200.CEL	7.4084835	2e-4	P
	Atlas 164.CEL	7.5384316	2e-4	P
TobEA upper stem	Atlas 162.CEL	7.2704854	0.002	P
	Atlas 168.CEL	7.1173954	2e-4	P
	Atlas 196.CEL	7.6765194	2e-4	P
	Atlas 160.CEL	7.105163	2e-4	P
	Atlas 170.CEL	6.854809	7e-4	P
TobEA cauline leaf	Atlas 229.CEL	7.359842	2e-4	P
	Atlas 231.CEL	7.2747407	2e-4	P
	Atlas 237.CEL	7.3948298	2e-4	P
	Atlas 233.CEL	7.6212087	2e-4	P
	Atlas 235.CEL	7.5153146	2e-4	P
TobEA early senescent leaf	Atlas 182.CEL	7.2473855	2e-4	P
	Atlas 183.CEL	7.188641	2e-4	P
	Atlas 191.CEL	7.72693	2e-4	P
	Atlas 175.CEL	7.526173	2e-4	P
	Atlas 187.CEL	7.885955	0.003	P
TobEA late senescent leaf	Atlas 186.CEL	7.3417034	0.019	P
	Atlas 178.CEL	7.719359	2e-4	P
	Atlas 179.CEL	6.6923823	2e-4	P
	Atlas 190.CEL	7.3874073	2e-4	P
	Atlas 194.CEL	7.5629177	7e-4	P
TobEA mature leaf	Atlas 94.CEL	7.2747903	2e-4	P
	Atlas 93.CEL	7.8354135	2e-4	P
	Atlas 96.CEL	7.873859	2e-4	P
	Atlas 97.CEL	7.4047813	2e-4	P
	Atlas 95.CEL	7.452809	2e-4	P
TobEA mid/early senescent leaf	Atlas 181.CEL	7.18064	0.019	P
	Atlas 176.CEL	7.3282	2e-4	P
	Atlas 184.CEL	7.0416102	2e-4	P
	Atlas 188.CEL	7.695923	0.004	P
	Atlas 192.CEL	7.86679	2e-4	P
TobEA mid/late senescent leaf	Atlas 180.CEL	7.3857703	7e-4	P
	Atlas 177.CEL	7.4395566	0.002	P
	Atlas 185.CEL	7.3636055	7e-4	P
	Atlas 193.CEL	7.7633266	2e-4	P
	Atlas 189.CEL	7.714926	0.001	P
TobEA young leaf	Atlas 53.CEL	7.377446	0.002	P
	Atlas 56.CEL	7.4911103	2e-4	P
	Atlas 57.CEL	7.4141417	2e-4	P
	Atlas 55.CEL	7.626491	2e-4	P
	Atlas 54.CEL	7.046072	2e-4	P
TobEA mature root	Atlas 63.CEL	6.7517567	2e-4	P
	Atlas 65.CEL	7.584061	7e-4	P
	Atlas 64.CEL	7.124867	7e-4	P
	Atlas 67.CEL	7.1691637	2e-4	P
	Atlas 66.CEL	6.597379	0.008	P
TobEA young root	Atlas 40.CEL	6.8736744	7e-4	P
	Atlas 41.CEL	7.0375714	2e-4	P
	Atlas 44.CEL	6.8953824	2e-4	P
	Atlas 39.CEL	6.7427897	0.004	P
	Atlas 43.CEL	6.61794	2e-4	P
	Atlas 42.CEL	7.116318	2e-4	P
TobEA seed	Atlas 76.CEL	7.923761	2e-4	P
	Atlas 98.CEL	8.034179	2e-4	P
	Atlas 78.CEL	8.435325	2e-4	P
	Atlas 77.CEL	8.169817	2e-4	P
	Atlas 79.CEL	7.955019	2e-4	P
	Atlas 99.CEL	8.002976	2e-4	P
TobEA young shoot	Atlas 87.CEL	7.1008663	7e-4	P
	Atlas 88.CEL	7.5220137	2e-4	P
	Atlas 86.CEL	6.875501	2e-4	P
	Atlas 89.CEL	6.6645517	2e-4	P
	Atlas 90.CEL	6.9419084	2e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (1 templates correlated)

Template	Pearson	Internal Mapping
EB450013_at	0.8050003	SGN-U437766

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