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Expression Template: EB445554_at

Template Basic Information

Template name:	EB445554_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U436098
External db links:	GenBank: EB445554

Annotations for unigene SGN-U436098 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147866731\|emb\|CAN78854.1\|	246	2e-63	72.5	456 bp (55.8%)	1
Description:	hypothetical protein [Vitis vinifera]
arabidopsis	blastx	At1G61240.3	235	3e-62	71.34	456 bp (55.8%)	1
Description:	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11170.1); similar to putative lysi&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
EB445554_at_probe_01	PM	data not available	data not available	1
EB445554_at_probe_02	PM	data not available	data not available	1
EB445554_at_probe_03	PM	data not available	data not available	1
EB445554_at_probe_04	PM	data not available	data not available	1
EB445554_at_probe_05	PM	data not available	data not available	1
EB445554_at_probe_06	PM	data not available	data not available	1
EB445554_at_probe_07	PM	data not available	data not available	1
EB445554_at_probe_08	PM	data not available	data not available	1
EB445554_at_probe_09	PM	data not available	data not available	1
EB445554_at_probe_10	PM	data not available	data not available	1
EB445554_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	8.99	9.03	0.23	0.03
	TobEA vegetative shoot apex	shoot apex	8	8	9.04	9.08	0.09	0.01
	TobEA closed bud	flower bud	5	5	9.12	9.12	0.12	0.01
	TobEA open bud	flower bud	5	5	9.27	9.28	0.11	0.01
	TobEA cotyledons	cotyledon	5	5	8.10	7.98	0.31	0.04
	TobEA flower	flower	5	5	9.29	9.33	0.22	0.02
	TobEA lower stem	stem internode	5	5	9.27	9.25	0.08	0.01
	TobEA upper stem	stem internode	5	5	9.06	9.08	0.17	0.02
	TobEA cauline leaf	cauline leaf	5	5	8.70	8.68	0.11	0.01
	TobEA early senescent leaf	adult vascular leaf	5	5	9.53	9.55	0.28	0.03
	TobEA late senescent leaf	adult vascular leaf	5	5	9.76	9.70	0.27	0.03
	TobEA mature leaf	adult vascular leaf	5	5	9.72	9.65	0.13	0.01
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	9.74	9.76	0.24	0.02
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	9.56	9.58	0.18	0.02
	TobEA young leaf	juvenile vascular leaf	5	5	8.42	8.41	0.19	0.02
	TobEA mature root	root	5	5	8.95	8.92	0.20	0.02
	TobEA young root	root	6	6	9.25	9.30	0.25	0.03
	TobEA seed	seed	6	6	9.33	9.35	0.20	0.02
	TobEA young shoot	shoot system	5	5	8.41	8.39	0.06	0.01

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 145.CEL	8.739146	2e-4	P
	Atlas 143.CEL	9.279832	2e-4	P
	Atlas 146.CEL	9.132874	2e-4	P
	Atlas 147.CEL	8.779466	2e-4	P
	Atlas 144.CEL	9.027032	2e-4	P
TobEA vegetative shoot apex	Atlas 58.CEL	9.1039295	2e-4	P
	Atlas 59.CEL	8.84918	2e-4	P
	Atlas 61.CEL	8.977785	2e-4	P
	Atlas 248.CEL	9.048259	2e-4	P
	Atlas 249.CEL	9.06652	2e-4	P
	Atlas 250.CEL	9.10094	2e-4	P
	Atlas 247.CEL	9.092039	2e-4	P
	Atlas 246.CEL	9.094501	2e-4	P
TobEA closed bud	Atlas 163.CEL	9.167683	2e-4	P
	Atlas 199.CEL	8.936423	2e-4	P
	Atlas 161.CEL	9.096256	2e-4	P
	Atlas 195.CEL	9.251816	2e-4	P
	Atlas 173.CEL	9.124781	2e-4	P
TobEA open bud	Atlas 159.CEL	9.150774	2e-4	P
	Atlas 167.CEL	9.404047	2e-4	P
	Atlas 171.CEL	9.3549595	2e-4	P
	Atlas 244.CEL	9.160344	2e-4	P
	Atlas 169.CEL	9.282187	2e-4	P
TobEA cotyledons	Atlas 70.CEL	7.984212	2e-4	P
	Atlas 74.CEL	8.560869	2e-4	P
	Atlas 71.CEL	7.8268003	0.001	P
	Atlas 75.CEL	8.268911	2e-4	P
	Atlas 69.CEL	7.866145	2e-4	P
TobEA flower	Atlas 165.CEL	9.576495	2e-4	P
	Atlas 198.CEL	9.034947	2e-4	P
	Atlas 158.CEL	9.380686	2e-4	P
	Atlas 166.CEL	9.325976	2e-4	P
	Atlas 197.CEL	9.110318	2e-4	P
TobEA lower stem	Atlas 200.CEL	9.410597	2e-4	P
	Atlas 164.CEL	9.236137	2e-4	P
	Atlas 172.CEL	9.252706	2e-4	P
	Atlas 174.CEL	9.192555	2e-4	P
	Atlas 245.CEL	9.252681	2e-4	P
TobEA upper stem	Atlas 160.CEL	8.819982	2e-4	P
	Atlas 168.CEL	9.136902	2e-4	P
	Atlas 196.CEL	9.080603	2e-4	P
	Atlas 162.CEL	9.27453	2e-4	P
	Atlas 170.CEL	8.963533	2e-4	P
TobEA cauline leaf	Atlas 231.CEL	8.623945	2e-4	P
	Atlas 237.CEL	8.581729	2e-4	P
	Atlas 229.CEL	8.684261	2e-4	P
	Atlas 233.CEL	8.839276	2e-4	P
	Atlas 235.CEL	8.790048	2e-4	P
TobEA early senescent leaf	Atlas 175.CEL	9.551338	2e-4	P
	Atlas 182.CEL	9.659288	2e-4	P
	Atlas 183.CEL	9.228996	2e-4	P
	Atlas 187.CEL	9.914693	2e-4	P
	Atlas 191.CEL	9.277811	2e-4	P
TobEA late senescent leaf	Atlas 179.CEL	9.841585	2e-4	P
	Atlas 186.CEL	9.461151	2e-4	P
	Atlas 190.CEL	10.178768	2e-4	P
	Atlas 194.CEL	9.700414	2e-4	P
	Atlas 178.CEL	9.600252	2e-4	P
TobEA mature leaf	Atlas 95.CEL	9.929172	2e-4	P
	Atlas 93.CEL	9.644004	2e-4	P
	Atlas 94.CEL	9.600462	2e-4	P
	Atlas 96.CEL	9.778262	2e-4	P
	Atlas 97.CEL	9.64945	2e-4	P
TobEA mid/early senescent leaf	Atlas 176.CEL	9.6745405	2e-4	P
	Atlas 184.CEL	9.921843	2e-4	P
	Atlas 188.CEL	9.968206	2e-4	P
	Atlas 192.CEL	9.76247	2e-4	P
	Atlas 181.CEL	9.365473	2e-4	P
TobEA mid/late senescent leaf	Atlas 180.CEL	9.325176	2e-4	P
	Atlas 177.CEL	9.702329	2e-4	P
	Atlas 185.CEL	9.42771	2e-4	P
	Atlas 189.CEL	9.754556	2e-4	P
	Atlas 193.CEL	9.583998	2e-4	P
TobEA young leaf	Atlas 56.CEL	8.307967	2e-4	P
	Atlas 53.CEL	8.496818	2e-4	P
	Atlas 54.CEL	8.41038	2e-4	P
	Atlas 55.CEL	8.196057	2e-4	P
	Atlas 57.CEL	8.693434	2e-4	P
TobEA mature root	Atlas 64.CEL	8.79511	2e-4	P
	Atlas 65.CEL	8.965738	2e-4	P
	Atlas 63.CEL	9.281272	2e-4	P
	Atlas 66.CEL	8.805198	7e-4	P
	Atlas 67.CEL	8.91705	2e-4	P
TobEA young root	Atlas 43.CEL	9.265454	2e-4	P
	Atlas 41.CEL	9.33645	2e-4	P
	Atlas 44.CEL	8.790731	2e-4	P
	Atlas 39.CEL	9.43533	2e-4	P
	Atlas 40.CEL	9.180197	2e-4	P
	Atlas 42.CEL	9.465005	2e-4	P
TobEA seed	Atlas 79.CEL	9.331713	2e-4	P
	Atlas 98.CEL	9.462158	2e-4	P
	Atlas 77.CEL	9.1304245	2e-4	P
	Atlas 99.CEL	9.624438	2e-4	P
	Atlas 76.CEL	9.095748	2e-4	P
	Atlas 78.CEL	9.361896	2e-4	P
TobEA young shoot	Atlas 86.CEL	8.4130125	2e-4	P
	Atlas 89.CEL	8.354819	2e-4	P
	Atlas 90.CEL	8.390157	2e-4	P
	Atlas 87.CEL	8.507512	2e-4	P
	Atlas 88.CEL	8.375069	2e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (14 templates correlated)

Template	Pearson	Internal Mapping
CV018580_at	0.8343522	SGN-U437435
C3203_at	0.8340845	SGN-U435618
C2881_s_at	0.8330064	SGN-U431700
TT20_C04_at	0.8239774	SGN-U467293
C212_at	0.8234753	SGN-U434819
C9438_at	0.8229338	SGN-U425329
EB683909_at	0.8192388	SGN-U421402
C8040_at	0.8124113	SGN-U428193
C307_at	0.8090655	SGN-U442822
C6632_at	0.8076256	SGN-U424154
TT03_E18_at	0.8073204	SGN-U429568
DW003771_at	0.8061202	SGN-U448838
DV161249_at	0.8057768	SGN-U429008
TT48_M11_at	0.8011345	SGN-U483914

Correlation Type:

Negative correlations (2 templates correlated)

Template	Pearson	Internal Mapping
C6562_at	-0.821205	SGN-U440257
C641_s_at	-0.801886	SGN-U446460

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