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Expression Template: EB445175_at

Template Basic Information

Template name:	EB445175_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U426872
External db links:	GenBank: EB445175

Annotations for unigene SGN-U426872 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|158828259\|gb\|ABW81135.1\|	377	9e-103	89.73	660 bp (68.8%)	-3
Description:	unknown [Capsella rubella]
arabidopsis	blastx	At5G19990.1	377	7e-105	89.73	660 bp (68.8%)	-3
Description:	Symbols: ATSUG1 \| ATSUG1; ATPase \| chr5:6752146-6754920 FORWARD
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
EB445175_at_probe_01	PM	data not available	data not available	1
EB445175_at_probe_02	PM	data not available	data not available	1
EB445175_at_probe_03	PM	data not available	data not available	1
EB445175_at_probe_04	PM	data not available	data not available	1
EB445175_at_probe_05	PM	data not available	data not available	1
EB445175_at_probe_06	PM	data not available	data not available	1
EB445175_at_probe_07	PM	data not available	data not available	1
EB445175_at_probe_08	PM	data not available	data not available	1
EB445175_at_probe_09	PM	data not available	data not available	1
EB445175_at_probe_10	PM	data not available	data not available	1
EB445175_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	12.47	12.49	0.11	0.01
	TobEA vegetative shoot apex	shoot apex	8	8	12.17	12.13	0.17	0.01
	TobEA closed bud	flower bud	5	5	12.13	12.11	0.10	0.01
	TobEA open bud	flower bud	5	5	11.91	11.91	0.13	0.01
	TobEA cotyledons	cotyledon	5	5	11.78	11.66	0.27	0.02
	TobEA flower	flower	5	5	12.09	12.09	0.09	0.01
	TobEA lower stem	stem internode	5	5	12.07	12.09	0.09	0.01
	TobEA upper stem	stem internode	5	5	11.83	11.92	0.19	0.02
	TobEA cauline leaf	cauline leaf	5	5	12.02	12.03	0.09	0.01
	TobEA early senescent leaf	adult vascular leaf	5	5	11.79	11.78	0.28	0.02
	TobEA late senescent leaf	adult vascular leaf	5	5	12.20	12.28	0.24	0.02
	TobEA mature leaf	adult vascular leaf	5	5	11.90	11.88	0.11	0.01
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	11.54	11.57	0.27	0.02
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	11.64	11.67	0.32	0.03
	TobEA young leaf	juvenile vascular leaf	5	5	12.27	12.28	0.06	0.00
	TobEA mature root	root	5	5	12.51	12.53	0.06	0.00
	TobEA young root	root	6	6	12.42	12.39	0.18	0.01
	TobEA seed	seed	6	6	12.76	12.80	0.18	0.01
	TobEA young shoot	shoot system	5	5	12.03	12.02	0.06	0.01

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 145.CEL	12.304029	2e-4	P
	Atlas 143.CEL	12.558235	2e-4	P
	Atlas 146.CEL	12.48961	2e-4	P
	Atlas 147.CEL	12.427663	2e-4	P
	Atlas 144.CEL	12.568305	2e-4	P
TobEA vegetative shoot apex	Atlas 247.CEL	12.149543	2e-4	P
	Atlas 248.CEL	12.035909	2e-4	P
	Atlas 61.CEL	12.323218	2e-4	P
	Atlas 249.CEL	12.099666	2e-4	P
	Atlas 58.CEL	12.382812	2e-4	P
	Atlas 246.CEL	12.103783	2e-4	P
	Atlas 250.CEL	11.902946	2e-4	P
	Atlas 59.CEL	12.362859	2e-4	P
TobEA closed bud	Atlas 173.CEL	12.106136	2e-4	P
	Atlas 161.CEL	12.165794	2e-4	P
	Atlas 199.CEL	12.02244	2e-4	P
	Atlas 163.CEL	12.287404	2e-4	P
	Atlas 195.CEL	12.076666	2e-4	P
TobEA open bud	Atlas 169.CEL	11.953049	2e-4	P
	Atlas 244.CEL	11.72765	2e-4	P
	Atlas 159.CEL	11.858869	2e-4	P
	Atlas 167.CEL	11.910214	2e-4	P
	Atlas 171.CEL	12.085655	2e-4	P
TobEA cotyledons	Atlas 69.CEL	12.169922	2e-4	P
	Atlas 74.CEL	11.634953	2e-4	P
	Atlas 71.CEL	11.916105	2e-4	P
	Atlas 70.CEL	11.494583	2e-4	P
	Atlas 75.CEL	11.661756	2e-4	P
TobEA flower	Atlas 158.CEL	12.143931	2e-4	P
	Atlas 198.CEL	12.086637	2e-4	P
	Atlas 165.CEL	11.990661	2e-4	P
	Atlas 166.CEL	12.199203	2e-4	P
	Atlas 197.CEL	12.023959	2e-4	P
TobEA lower stem	Atlas 164.CEL	12.090035	2e-4	P
	Atlas 174.CEL	12.045081	2e-4	P
	Atlas 172.CEL	12.169704	2e-4	P
	Atlas 245.CEL	11.940203	2e-4	P
	Atlas 200.CEL	12.105347	2e-4	P
TobEA upper stem	Atlas 168.CEL	11.921983	2e-4	P
	Atlas 162.CEL	11.970189	2e-4	P
	Atlas 196.CEL	11.922006	2e-4	P
	Atlas 160.CEL	11.504551	2e-4	P
	Atlas 170.CEL	11.845879	2e-4	P
TobEA cauline leaf	Atlas 231.CEL	11.972684	2e-4	P
	Atlas 237.CEL	12.145185	2e-4	P
	Atlas 233.CEL	12.033078	2e-4	P
	Atlas 229.CEL	12.031828	2e-4	P
	Atlas 235.CEL	11.900252	2e-4	P
TobEA early senescent leaf	Atlas 175.CEL	11.780121	2e-4	P
	Atlas 183.CEL	11.587664	2e-4	P
	Atlas 187.CEL	11.858227	2e-4	P
	Atlas 182.CEL	11.507339	2e-4	P
	Atlas 191.CEL	12.23278	2e-4	P
TobEA late senescent leaf	Atlas 178.CEL	12.220914	2e-4	P
	Atlas 179.CEL	12.383941	2e-4	P
	Atlas 194.CEL	12.275541	2e-4	P
	Atlas 186.CEL	11.786467	2e-4	P
	Atlas 190.CEL	12.318479	2e-4	P
TobEA mature leaf	Atlas 95.CEL	11.839859	2e-4	P
	Atlas 97.CEL	11.749461	2e-4	P
	Atlas 94.CEL	11.876573	2e-4	P
	Atlas 93.CEL	12.047628	2e-4	P
	Atlas 96.CEL	11.964375	2e-4	P
TobEA mid/early senescent leaf	Atlas 184.CEL	11.259336	2e-4	P
	Atlas 188.CEL	11.86807	2e-4	P
	Atlas 176.CEL	11.285971	2e-4	P
	Atlas 192.CEL	11.574226	2e-4	P
	Atlas 181.CEL	11.72168	2e-4	P
TobEA mid/late senescent leaf	Atlas 180.CEL	11.946693	2e-4	P
	Atlas 189.CEL	11.947952	2e-4	P
	Atlas 193.CEL	11.300935	2e-4	P
	Atlas 177.CEL	11.316778	2e-4	P
	Atlas 185.CEL	11.67034	2e-4	P
TobEA young leaf	Atlas 54.CEL	12.278334	2e-4	P
	Atlas 55.CEL	12.226691	2e-4	P
	Atlas 57.CEL	12.369973	2e-4	P
	Atlas 53.CEL	12.277681	2e-4	P
	Atlas 56.CEL	12.215343	2e-4	P
TobEA mature root	Atlas 63.CEL	12.425878	2e-4	P
	Atlas 66.CEL	12.556771	2e-4	P
	Atlas 67.CEL	12.487082	2e-4	P
	Atlas 64.CEL	12.532707	2e-4	P
	Atlas 65.CEL	12.56708	2e-4	P
TobEA young root	Atlas 39.CEL	12.675343	2e-4	P
	Atlas 40.CEL	12.359726	2e-4	P
	Atlas 42.CEL	12.348836	2e-4	P
	Atlas 43.CEL	12.15684	2e-4	P
	Atlas 41.CEL	12.527653	2e-4	P
	Atlas 44.CEL	12.428439	2e-4	P
TobEA seed	Atlas 76.CEL	12.568622	2e-4	P
	Atlas 99.CEL	12.789637	2e-4	P
	Atlas 77.CEL	12.914117	2e-4	P
	Atlas 78.CEL	12.530478	2e-4	P
	Atlas 79.CEL	12.967881	2e-4	P
	Atlas 98.CEL	12.808908	2e-4	P
TobEA young shoot	Atlas 87.CEL	12.109516	2e-4	P
	Atlas 86.CEL	12.020637	2e-4	P
	Atlas 89.CEL	11.969436	2e-4	P
	Atlas 90.CEL	12.083326	2e-4	P
	Atlas 88.CEL	11.972675	2e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (35 templates correlated)

Template	Pearson	Internal Mapping
EB445175_s_at	0.8859814	SGN-U426872
C6691_at	0.8707021	SGN-U422852
C4082_s_at	0.8430781	No available
C2974_at	0.8415204	SGN-U421263
C2953_at	0.8344282	SGN-U425905
EB437510_at	0.8343302	No available
C11298_at	0.8333642	SGN-U437273
C9921_at	0.8331664	SGN-U449312
BP535019_at	0.8300485	SGN-U435288
C4936_at	0.8293471	SGN-U459118
C7075_at	0.8283861	SGN-U444080
C11607_at	0.8254227	No available
C8329_at	0.8252025	SGN-U442487
C701_at	0.8245837	SGN-U431259
BP532117_at	0.8242977	SGN-U427127
C7718_at	0.8230357	SGN-U441884
C9124_x_at	0.8211137	SGN-U440790
C1047_at	0.8154196	SGN-U437397
C915_at	0.8135633	SGN-U433734
CV018732_x_at	0.8134376	SGN-U422378
BP535304_at	0.8131928	SGN-U466452
C8525_at	0.8128322	SGN-U422697
C306_at	0.8125669	SGN-U430335
TT05_F22_at	0.8116996	No available
EB444189_x_at	0.8116028	No available
C1137_at	0.8111493	SGN-U424080
C867_at	0.8106337	SGN-U432041
DV158482_at	0.8086374	SGN-U449710
EB435631_at	0.8066654	SGN-U468982
C611_at	0.8061669	SGN-U442873
EB445936_at	0.8046918	SGN-U437394
DW002122_at	0.802192	SGN-U472737
BP525841_s_at	0.801511	SGN-U434575
C7340_at	0.801325	SGN-U465333
C2800_at	0.8010483	SGN-U469694

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