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Expression Template: EB441447_at

Template Basic Information

Template name:	EB441447_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U441092
External db links:	GenBank: EB441447

Annotations for unigene SGN-U441092 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|543868\|sp\|Q06450\|ATP5E_IPOBA	131	1e-28	84.29	210 bp (15.1%)	1
Description:	ATP
arabidopsis	blastx	At1G51650.1	130	3e-30	81.16	207 bp (14.9%)	1
Description:	ATP synthase epsilon chain, mitochondrial \| chr1:19156348-19157309 FORWARD
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
EB441447_at_probe_01	PM	data not available	data not available	1
EB441447_at_probe_02	PM	data not available	data not available	1
EB441447_at_probe_03	PM	data not available	data not available	1
EB441447_at_probe_04	PM	data not available	data not available	1
EB441447_at_probe_05	PM	data not available	data not available	1
EB441447_at_probe_06	PM	data not available	data not available	1
EB441447_at_probe_07	PM	data not available	data not available	1
EB441447_at_probe_08	PM	data not available	data not available	1
EB441447_at_probe_09	PM	data not available	data not available	1
EB441447_at_probe_10	PM	data not available	data not available	1
EB441447_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	10.41	10.39	0.08	0.01
	TobEA vegetative shoot apex	shoot apex	8	8	11.20	11.17	0.40	0.04
	TobEA closed bud	flower bud	5	5	10.43	10.40	0.15	0.01
	TobEA open bud	flower bud	5	5	10.79	10.60	0.53	0.05
	TobEA cotyledons	cotyledon	5	5	10.21	10.18	0.13	0.01
	TobEA flower	flower	5	5	10.67	10.68	0.06	0.01
	TobEA lower stem	stem internode	5	5	10.61	10.51	0.21	0.02
	TobEA upper stem	stem internode	5	5	10.75	10.81	0.26	0.02
	TobEA cauline leaf	cauline leaf	5	5	10.96	10.81	0.33	0.03
	TobEA early senescent leaf	adult vascular leaf	5	5	10.04	10.06	0.60	0.06
	TobEA late senescent leaf	adult vascular leaf	5	5	9.94	9.83	0.44	0.04
	TobEA mature leaf	adult vascular leaf	5	5	10.45	10.52	0.46	0.04
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	10.14	10.24	0.40	0.04
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	10.03	9.96	0.56	0.06
	TobEA young leaf	juvenile vascular leaf	5	5	10.32	10.20	0.21	0.02
	TobEA mature root	root	5	5	10.94	10.92	0.20	0.02
	TobEA young root	root	6	6	11.42	11.65	0.60	0.05
	TobEA seed	seed	6	6	10.89	10.98	0.33	0.03
	TobEA young shoot	shoot system	5	5	10.27	10.11	0.45	0.04

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 144.CEL	10.339928	0.003	P
	Atlas 145.CEL	10.494802	0.008	P
	Atlas 147.CEL	10.388019	0.008	P
	Atlas 143.CEL	10.329618	0.004	P
	Atlas 146.CEL	10.495489	0.008	P
TobEA vegetative shoot apex	Atlas 248.CEL	11.996907	0.008	P
	Atlas 249.CEL	11.185106	0.008	P
	Atlas 250.CEL	11.223902	0.008	P
	Atlas 58.CEL	10.645975	0.008	P
	Atlas 246.CEL	10.911755	0.008	P
	Atlas 247.CEL	11.441789	0.006	P
	Atlas 59.CEL	11.149137	0.008	P
	Atlas 61.CEL	11.06383	0.008	P
TobEA closed bud	Atlas 163.CEL	10.40213	0.003	P
	Atlas 199.CEL	10.60138	0.003	P
	Atlas 195.CEL	10.558909	0.004	P
	Atlas 161.CEL	10.293168	0.003	P
	Atlas 173.CEL	10.282613	0.004	P
TobEA open bud	Atlas 171.CEL	10.457639	0.004	P
	Atlas 244.CEL	11.721646	0.006	P
	Atlas 159.CEL	10.595869	0.001	P
	Atlas 169.CEL	10.628615	0.004	P
	Atlas 167.CEL	10.521818	0.004	P
TobEA cotyledons	Atlas 75.CEL	10.089782	0.003	P
	Atlas 71.CEL	10.405731	0.004	P
	Atlas 74.CEL	10.270993	0.001	P
	Atlas 69.CEL	10.178219	0.002	P
	Atlas 70.CEL	10.114195	0.002	P
TobEA flower	Atlas 165.CEL	10.582652	0.001	P
	Atlas 166.CEL	10.688854	7e-4	P
	Atlas 197.CEL	10.750333	0.001	P
	Atlas 158.CEL	10.648139	0.001	P
	Atlas 198.CEL	10.681479	0.001	P
TobEA lower stem	Atlas 200.CEL	10.581713	0.002	P
	Atlas 172.CEL	10.488388	0.001	P
	Atlas 245.CEL	10.973094	0.004	P
	Atlas 164.CEL	10.470098	0.003	P
	Atlas 174.CEL	10.511932	0.003	P
TobEA upper stem	Atlas 160.CEL	10.814707	0.002	P
	Atlas 162.CEL	10.308674	0.001	P
	Atlas 168.CEL	10.918001	0.002	P
	Atlas 170.CEL	10.949552	0.001	P
	Atlas 196.CEL	10.739628	0.001	P
TobEA cauline leaf	Atlas 229.CEL	10.81367	0.001	P
	Atlas 233.CEL	10.721576	0.002	P
	Atlas 235.CEL	11.021265	0.004	P
	Atlas 231.CEL	10.744362	0.003	P
	Atlas 237.CEL	11.502316	0.001	P
TobEA early senescent leaf	Atlas 183.CEL	9.7196865	0.006	P
	Atlas 187.CEL	9.221256	0.006	P
	Atlas 175.CEL	10.554456	0.002	P
	Atlas 182.CEL	10.659364	0.002	P
	Atlas 191.CEL	10.063227	0.004	P
TobEA late senescent leaf	Atlas 186.CEL	9.83212	0.004	P
	Atlas 178.CEL	10.637293	0.004	P
	Atlas 194.CEL	10.051482	0.001	P
	Atlas 179.CEL	9.575279	0.004	P
	Atlas 190.CEL	9.602257	0.006	P
TobEA mature leaf	Atlas 93.CEL	10.908381	0.003	P
	Atlas 95.CEL	9.968401	0.004	P
	Atlas 96.CEL	9.981223	0.003	P
	Atlas 94.CEL	10.8821	0.002	P
	Atlas 97.CEL	10.521605	0.004	P
TobEA mid/early senescent leaf	Atlas 176.CEL	10.560591	0.002	P
	Atlas 184.CEL	10.455931	0.001	P
	Atlas 192.CEL	10.239753	0.002	P
	Atlas 181.CEL	9.726338	0.006	P
	Atlas 188.CEL	9.707053	0.004	P
TobEA mid/late senescent leaf	Atlas 189.CEL	9.208276	0.008	P
	Atlas 193.CEL	10.360588	0.004	P
	Atlas 180.CEL	9.897527	0.004	P
	Atlas 185.CEL	9.964861	0.004	P
	Atlas 177.CEL	10.696248	0.002	P
TobEA young leaf	Atlas 53.CEL	10.195225	0.008	P
	Atlas 57.CEL	10.184316	0.008	P
	Atlas 54.CEL	10.670356	0.006	P
	Atlas 55.CEL	10.37218	0.008	P
	Atlas 56.CEL	10.178785	0.008	P
TobEA mature root	Atlas 65.CEL	10.774861	0.001	P
	Atlas 67.CEL	11.111774	0.001	P
	Atlas 63.CEL	10.726114	0.001	P
	Atlas 66.CEL	11.167976	0.001	P
	Atlas 64.CEL	10.922266	0.001	P
TobEA young root	Atlas 39.CEL	10.553612	0.003	P
	Atlas 42.CEL	11.667828	0.001	P
	Atlas 44.CEL	12.062131	0.001	P
	Atlas 40.CEL	11.801126	0.001	P
	Atlas 43.CEL	11.636497	0.002	P
	Atlas 41.CEL	10.820797	0.001	P
TobEA seed	Atlas 76.CEL	10.546678	0.008	P
	Atlas 77.CEL	11.128	0.003	P
	Atlas 99.CEL	11.144953	0.002	P
	Atlas 78.CEL	10.4741	0.011	P
	Atlas 79.CEL	10.828669	0.004	P
	Atlas 98.CEL	11.231479	0.004	P
TobEA young shoot	Atlas 86.CEL	10.044724	0.004	P
	Atlas 89.CEL	9.929078	0.003	P
	Atlas 90.CEL	11.054705	0.006	P
	Atlas 87.CEL	10.208812	0.002	P
	Atlas 88.CEL	10.110903	0.002	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (2 templates correlated)

Template	Pearson	Internal Mapping
C3622_at	0.8321973	SGN-U431464
C3622_x_at	0.8080595	SGN-U431464

Correlation Type:

Negative correlations (1 templates correlated)

Template	Pearson	Internal Mapping
C6260_at	-0.811409	SGN-U428412

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