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Expression Template: EB437390_at

Template Basic Information

Template name:	EB437390_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U443010
External db links:	GenBank: EB437390

Annotations for unigene SGN-U443010 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157336328\|emb\|CAO71013.1\|	304	4e-81	91.88	480 bp (61.4%)	3
Description:	unnamed
arabidopsis	blastx	At5G18620.2	300	8e-82	87.95	495 bp (63.3%)	3
Description:	Symbols: CHR17 \| CHR17 (CHROMATIN REMODELING FACTOR17); DNA-dependent ATPase \| chr5:6196192-62&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
EB437390_at_probe_01	PM	data not available	data not available	1
EB437390_at_probe_02	PM	data not available	data not available	1
EB437390_at_probe_03	PM	data not available	data not available	1
EB437390_at_probe_04	PM	data not available	data not available	1
EB437390_at_probe_05	PM	data not available	data not available	1
EB437390_at_probe_06	PM	data not available	data not available	1
EB437390_at_probe_07	PM	data not available	data not available	1
EB437390_at_probe_08	PM	data not available	data not available	1
EB437390_at_probe_09	PM	data not available	data not available	1
EB437390_at_probe_10	PM	data not available	data not available	1
EB437390_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	11.77	11.81	0.12	0.01
	TobEA vegetative shoot apex	shoot apex	8	8	11.50	11.59	0.29	0.03
	TobEA closed bud	flower bud	5	5	11.24	11.23	0.08	0.01
	TobEA open bud	flower bud	5	5	10.66	10.67	0.21	0.02
	TobEA cotyledons	cotyledon	5	5	9.89	9.64	0.53	0.05
	TobEA flower	flower	5	5	10.65	10.66	0.08	0.01
	TobEA lower stem	stem internode	5	5	11.90	11.94	0.09	0.01
	TobEA upper stem	stem internode	5	5	10.70	10.58	0.27	0.03
	TobEA cauline leaf	cauline leaf	5	5	10.84	10.79	0.14	0.01
	TobEA early senescent leaf	adult vascular leaf	5	5	10.32	10.31	0.42	0.04
	TobEA late senescent leaf	adult vascular leaf	5	5	10.73	10.70	0.38	0.04
	TobEA mature leaf	adult vascular leaf	5	5	10.57	10.62	0.16	0.02
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	9.76	9.31	0.75	0.08
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	10.22	10.85	1.03	0.10
	TobEA young leaf	juvenile vascular leaf	5	5	11.11	11.09	0.10	0.01
	TobEA mature root	root	5	5	11.06	11.06	0.09	0.01
	TobEA young root	root	6	6	11.12	11.20	0.28	0.02
	TobEA seed	seed	6	6	10.71	10.60	0.25	0.02
	TobEA young shoot	shoot system	5	5	10.12	10.10	0.10	0.01

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 143.CEL	11.842195	2e-4	P
	Atlas 146.CEL	11.808334	2e-4	P
	Atlas 144.CEL	11.905234	2e-4	P
	Atlas 147.CEL	11.641479	2e-4	P
	Atlas 145.CEL	11.656871	2e-4	P
TobEA vegetative shoot apex	Atlas 250.CEL	11.888936	2e-4	P
	Atlas 59.CEL	10.995752	2e-4	P
	Atlas 61.CEL	11.317062	2e-4	P
	Atlas 248.CEL	11.531235	2e-4	P
	Atlas 58.CEL	11.259415	2e-4	P
	Atlas 246.CEL	11.69787	2e-4	P
	Atlas 247.CEL	11.659794	2e-4	P
	Atlas 249.CEL	11.64258	2e-4	P
TobEA closed bud	Atlas 163.CEL	11.233504	2e-4	P
	Atlas 173.CEL	11.231778	2e-4	P
	Atlas 195.CEL	11.378445	2e-4	P
	Atlas 199.CEL	11.159692	2e-4	P
	Atlas 161.CEL	11.186674	2e-4	P
TobEA open bud	Atlas 159.CEL	10.442828	2e-4	P
	Atlas 169.CEL	10.67253	2e-4	P
	Atlas 171.CEL	10.746441	2e-4	P
	Atlas 244.CEL	10.475671	2e-4	P
	Atlas 167.CEL	10.967761	2e-4	P
TobEA cotyledons	Atlas 71.CEL	10.345393	2e-4	P
	Atlas 75.CEL	9.64346	2e-4	P
	Atlas 69.CEL	10.54556	2e-4	P
	Atlas 74.CEL	9.570414	2e-4	P
	Atlas 70.CEL	9.326892	2e-4	P
TobEA flower	Atlas 165.CEL	10.542137	2e-4	P
	Atlas 166.CEL	10.599146	2e-4	P
	Atlas 198.CEL	10.731143	2e-4	P
	Atlas 158.CEL	10.658753	2e-4	P
	Atlas 197.CEL	10.723405	2e-4	P
TobEA lower stem	Atlas 245.CEL	11.948533	2e-4	P
	Atlas 174.CEL	11.760215	2e-4	P
	Atlas 200.CEL	11.878236	2e-4	P
	Atlas 164.CEL	11.943731	2e-4	P
	Atlas 172.CEL	11.975435	2e-4	P
TobEA upper stem	Atlas 162.CEL	10.553155	2e-4	P
	Atlas 170.CEL	10.479447	2e-4	P
	Atlas 196.CEL	11.150576	2e-4	P
	Atlas 160.CEL	10.585046	2e-4	P
	Atlas 168.CEL	10.707283	2e-4	P
TobEA cauline leaf	Atlas 231.CEL	10.785409	2e-4	P
	Atlas 233.CEL	10.936989	2e-4	P
	Atlas 229.CEL	11.023753	2e-4	P
	Atlas 235.CEL	10.675318	2e-4	P
	Atlas 237.CEL	10.784757	2e-4	P
TobEA early senescent leaf	Atlas 191.CEL	10.892409	2e-4	P
	Atlas 175.CEL	10.018332	2e-4	P
	Atlas 182.CEL	9.833344	2e-4	P
	Atlas 183.CEL	10.313442	2e-4	P
	Atlas 187.CEL	10.559173	2e-4	P
TobEA late senescent leaf	Atlas 194.CEL	10.704603	2e-4	P
	Atlas 178.CEL	10.289737	2e-4	P
	Atlas 179.CEL	11.018639	2e-4	P
	Atlas 186.CEL	10.430369	2e-4	P
	Atlas 190.CEL	11.204111	2e-4	P
TobEA mature leaf	Atlas 93.CEL	10.716994	2e-4	P
	Atlas 97.CEL	10.619359	2e-4	P
	Atlas 94.CEL	10.668764	2e-4	P
	Atlas 95.CEL	10.302202	2e-4	P
	Atlas 96.CEL	10.560756	2e-4	P
TobEA mid/early senescent leaf	Atlas 176.CEL	9.313954	2e-4	P
	Atlas 184.CEL	9.303073	2e-4	P
	Atlas 188.CEL	10.39164	2e-4	P
	Atlas 181.CEL	10.730176	2e-4	P
	Atlas 192.CEL	9.039336	2e-4	P
TobEA mid/late senescent leaf	Atlas 180.CEL	10.851997	2e-4	P
	Atlas 193.CEL	9.056683	2e-4	P
	Atlas 177.CEL	9.134967	2e-4	P
	Atlas 185.CEL	10.90657	2e-4	P
	Atlas 189.CEL	11.133768	2e-4	P
TobEA young leaf	Atlas 54.CEL	11.017194	2e-4	P
	Atlas 55.CEL	11.111225	2e-4	P
	Atlas 56.CEL	11.086519	2e-4	P
	Atlas 53.CEL	11.061506	2e-4	P
	Atlas 57.CEL	11.28519	2e-4	P
TobEA mature root	Atlas 65.CEL	11.028119	2e-4	P
	Atlas 67.CEL	10.95573	2e-4	P
	Atlas 64.CEL	11.060052	2e-4	P
	Atlas 63.CEL	11.19773	2e-4	P
	Atlas 66.CEL	11.070768	2e-4	P
TobEA young root	Atlas 39.CEL	11.368433	2e-4	P
	Atlas 42.CEL	11.231886	2e-4	P
	Atlas 40.CEL	10.910595	2e-4	P
	Atlas 43.CEL	10.679032	2e-4	P
	Atlas 44.CEL	11.174601	2e-4	P
	Atlas 41.CEL	11.381365	2e-4	P
TobEA seed	Atlas 79.CEL	10.643291	2e-4	P
	Atlas 77.CEL	11.126395	2e-4	P
	Atlas 78.CEL	10.515309	2e-4	P
	Atlas 76.CEL	10.499519	2e-4	P
	Atlas 98.CEL	10.90579	2e-4	P
	Atlas 99.CEL	10.556041	2e-4	P
TobEA young shoot	Atlas 88.CEL	10.126143	2e-4	P
	Atlas 89.CEL	9.99923	2e-4	P
	Atlas 90.CEL	10.277233	2e-4	P
	Atlas 87.CEL	10.085443	2e-4	P
	Atlas 86.CEL	10.103197	2e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (37 templates correlated)

Template	Pearson	Internal Mapping
C5264_at	0.901395	SGN-U442865
TT47_F14_at	0.8818494	SGN-U481131
TT25_L10_at	0.8788723	SGN-U486917
DV162563_at	0.8715865	SGN-U442330
TT35_D04_at	0.8702021	SGN-U450628
C3458_at	0.8682395	SGN-U436831
TT34_C16_at	0.8595112	SGN-U455457
DV162175_s_at	0.8582523	No available
DW004137_at	0.8534397	SGN-U438537
BP534486_s_at	0.8534299	SGN-U450173
C3251_at	0.8511398	SGN-U430501
EB446834_at	0.8503686	SGN-U445046
C2637_at	0.8406534	SGN-U441745
EB446047_at	0.8403131	SGN-U430256
C1549_s_at	0.8398177	SGN-U465523
EB427300_at	0.8337272	SGN-U450010
DW002161_at	0.8288169	SGN-U469618
AJ718372_at	0.8279465	SGN-U438537
BP530396_s_at	0.827641	SGN-U446590
DV160082_at	0.8258027	SGN-U435880
EB447413_at	0.8244125	SGN-U425587
EB446047_x_at	0.8225746	SGN-U430256
CV017023_s_at	0.8219038	SGN-U435966
EB681410_at	0.8189666	SGN-U485890
C2451_at	0.8189446	SGN-U422971
EB428811_at	0.818054	SGN-U437401
BP532739_at	0.8147327	SGN-U476121
C1729_s_at	0.812946	SGN-U437096
C7492_at	0.8121721	SGN-U447893
BP530122_at	0.8090353	SGN-U485052
C8269_at	0.8078348	SGN-U427038
C1829_at	0.8063671	SGN-U471760
DW002391_at	0.8059586	SGN-U474891
C8523_at	0.8050027	SGN-U450681
DV162195_at	0.8042455	SGN-U485787
CV020882_at	0.8031677	SGN-U440344
DW004216_at	0.8001247	SGN-U441564

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