Sol Genomics Network

clone(s) in cart (order)

Old browser version detected

This site is optimized for modern web browsers

Please upgrade your browser

Sorry!, some features may not work in outdated browsers

Sol Genomics Network

Search
- Organisms
- Loci & Genes
- Genome features
- Expression
- Accessions and Plots
- QTLs
- Markers
- BACs
- Unigenes
- ESTs and libraries
- Gene Families
- Insitu database
- Images
- People
- FAQ
Maps
- All Maps
- The New Comparative Viewer
- Comparative Viewer
- Submit a map
- Tomato
- Tomato-EXPEN 2000
- Tomato-Kazusa/SolCAP
- Tomato QTLs
- Tomato physical map
- Tomato FPC contig map
- Tomato IL map
- Tomato FISH map
- Tomato AGP map
- Pepper
- Pepper COSII map
- Pepper-AC99
- Pepper-FA03
- Eggplant
- Eggplant COSII map
- Eggplant-LXM 2002
- More Maps
- Potato-TXB 1992
- Tobacco SSR 2007
- Arabidopsis COSII
Genomes
- Sequenced Accessions
- Completed Genomes
- Tomato
- Potato
- Pepper
- Eggplant
- Solanum pennellii
- Solanum lycopersicoides
- Solanum pimpinellifolium
- Solanum lycopersicum var. cerasiforme
- Iochroma cyaneum
- Draft Genomes
- Nicotiana attenuata
- Nicotiana benthamiana
- Nicotiana tabacum
- Petunia axillaris
- Petunia inflata
- Solanum chilense
- Coffea humblotiana
- Resequencing projects
- Solanum lycopersicum inbreds
- 150 Tomato Genome Resequencing Project
- BGI Tomato 360 genomes
- Varitome Project
Projects
Tools
- Sequence Analysis
- BLAST
- VIGS Tool
- Alignment Analyzer
- Tree Browser
- Motif Finder
- Mapping
- Genome Browser (Jbrowse)
- SolBrowse Comparative genome viewer
- Comparative Map Viewer
- CAPS Designer
- solQTL: QTL Mapping
- Molecular Biology
- In Silico PCR
- Tomato Expression Atlas (TEA)
- Tomato Expression Database (TED)
- Systems Biology
- SolCyc Biochemical Pathways
- Coffee Interactomic Data
- SGN Ontology Browser
- Breeder Tools
- Breeders Toolbox
- Bulk Query
- FTP Site
- Download Genome Sequences
- Download Gene Sequences
- Clones, Arrays, Unigenes and BACs
- Unigene Converter
About
- About
- Contact
- Cite SGN
- Links
- Help
- FAQ
- Become SGN Editor
- Forum
- FTP data
- SlideShare
- Twitter
- Facebook

Advanced

This site uses cookies to provide logins and other features. Please accept the use of cookies by clicking Accept.

Expression Template: EB436951_at

Template Basic Information

Template name:	EB436951_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U435876
External db links:	GenBank: EB436951

Annotations for unigene SGN-U435876 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157347569\|emb\|CAO18206.1\|	657		88.53	1125 bp (99.8%)	1
Description:	unnamed
arabidopsis	blastx	At2G41140.1	622	2e-178	82.93	1125 bp (99.8%)	1
Description:	Symbols: CRK1 \| CRK1 (CDPK-RELATED KINASE 1); calcium ion binding / calcium-dependent protein &hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
EB436951_at_probe_01	PM	data not available	data not available	1
EB436951_at_probe_02	PM	data not available	data not available	1
EB436951_at_probe_03	PM	data not available	data not available	1
EB436951_at_probe_04	PM	data not available	data not available	1
EB436951_at_probe_05	PM	data not available	data not available	1
EB436951_at_probe_06	PM	data not available	data not available	1
EB436951_at_probe_07	PM	data not available	data not available	1
EB436951_at_probe_08	PM	data not available	data not available	1
EB436951_at_probe_09	PM	data not available	data not available	1
EB436951_at_probe_10	PM	data not available	data not available	1
EB436951_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	9.60	9.60	0.10	0.01
	TobEA vegetative shoot apex	shoot apex	8	8	9.62	9.65	0.26	0.03
	TobEA closed bud	flower bud	5	5	9.84	9.85	0.07	0.01
	TobEA open bud	flower bud	5	5	9.96	10.00	0.21	0.02
	TobEA cotyledons	cotyledon	5	5	9.71	9.66	0.17	0.02
	TobEA flower	flower	5	5	9.74	9.81	0.13	0.01
	TobEA lower stem	stem internode	5	5	10.09	10.10	0.03	0.00
	TobEA upper stem	stem internode	5	5	10.58	10.56	0.10	0.01
	TobEA cauline leaf	cauline leaf	5	5	9.57	9.61	0.21	0.02
	TobEA early senescent leaf	adult vascular leaf	5	5	9.93	9.92	0.23	0.02
	TobEA late senescent leaf	adult vascular leaf	5	5	10.03	10.02	0.09	0.01
	TobEA mature leaf	adult vascular leaf	5	5	9.90	9.88	0.20	0.02
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	9.85	10.02	0.28	0.03
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	9.71	9.75	0.13	0.01
	TobEA young leaf	juvenile vascular leaf	5	5	9.70	9.78	0.18	0.02
	TobEA mature root	root	5	5	10.05	10.08	0.10	0.01
	TobEA young root	root	6	6	9.95	9.91	0.14	0.01
	TobEA seed	seed	6	6	8.20	8.13	0.21	0.03
	TobEA young shoot	shoot system	5	5	9.67	9.71	0.11	0.01

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 147.CEL	9.614406	2e-4	P
	Atlas 143.CEL	9.485363	2e-4	P
	Atlas 146.CEL	9.5405035	2e-4	P
	Atlas 144.CEL	9.600321	2e-4	P
	Atlas 145.CEL	9.743671	2e-4	P
TobEA vegetative shoot apex	Atlas 247.CEL	9.742153	2e-4	P
	Atlas 246.CEL	9.822642	2e-4	P
	Atlas 250.CEL	9.954311	2e-4	P
	Atlas 248.CEL	9.440703	2e-4	P
	Atlas 249.CEL	9.816704	2e-4	P
	Atlas 58.CEL	9.461875	2e-4	P
	Atlas 59.CEL	9.180177	2e-4	P
	Atlas 61.CEL	9.55559	2e-4	P
TobEA closed bud	Atlas 161.CEL	9.862911	2e-4	P
	Atlas 195.CEL	9.849398	2e-4	P
	Atlas 163.CEL	9.761673	2e-4	P
	Atlas 173.CEL	9.801756	2e-4	P
	Atlas 199.CEL	9.937368	2e-4	P
TobEA open bud	Atlas 169.CEL	10.129912	2e-4	P
	Atlas 159.CEL	9.806254	2e-4	P
	Atlas 167.CEL	10.184123	2e-4	P
	Atlas 171.CEL	9.99776	2e-4	P
	Atlas 244.CEL	9.6988535	2e-4	P
TobEA cotyledons	Atlas 69.CEL	9.54872	2e-4	P
	Atlas 71.CEL	9.663023	2e-4	P
	Atlas 74.CEL	9.576801	2e-4	P
	Atlas 70.CEL	9.940575	2e-4	P
	Atlas 75.CEL	9.838813	2e-4	P
TobEA flower	Atlas 165.CEL	9.8436985	2e-4	P
	Atlas 166.CEL	9.808439	2e-4	P
	Atlas 197.CEL	9.820753	2e-4	P
	Atlas 198.CEL	9.661226	2e-4	P
	Atlas 158.CEL	9.54349	2e-4	P
TobEA lower stem	Atlas 172.CEL	10.131248	2e-4	P
	Atlas 200.CEL	10.099748	2e-4	P
	Atlas 164.CEL	10.080744	2e-4	P
	Atlas 174.CEL	10.106487	2e-4	P
	Atlas 245.CEL	10.054849	2e-4	P
TobEA upper stem	Atlas 170.CEL	10.659127	2e-4	P
	Atlas 196.CEL	10.468016	2e-4	P
	Atlas 160.CEL	10.705846	2e-4	P
	Atlas 162.CEL	10.561063	2e-4	P
	Atlas 168.CEL	10.518923	2e-4	P
TobEA cauline leaf	Atlas 229.CEL	9.490631	2e-4	P
	Atlas 237.CEL	9.267515	2e-4	P
	Atlas 235.CEL	9.660123	2e-4	P
	Atlas 231.CEL	9.609038	2e-4	P
	Atlas 233.CEL	9.836435	2e-4	P
TobEA early senescent leaf	Atlas 175.CEL	9.615147	2e-4	P
	Atlas 191.CEL	10.246025	2e-4	P
	Atlas 183.CEL	9.845135	2e-4	P
	Atlas 187.CEL	10.002421	2e-4	P
	Atlas 182.CEL	9.920471	2e-4	P
TobEA late senescent leaf	Atlas 186.CEL	9.9144	2e-4	P
	Atlas 190.CEL	10.017183	2e-4	P
	Atlas 179.CEL	10.156009	2e-4	P
	Atlas 194.CEL	10.050431	2e-4	P
	Atlas 178.CEL	9.997204	2e-4	P
TobEA mature leaf	Atlas 94.CEL	9.757421	2e-4	P
	Atlas 95.CEL	9.883348	2e-4	P
	Atlas 93.CEL	9.699191	2e-4	P
	Atlas 97.CEL	9.944293	2e-4	P
	Atlas 96.CEL	10.213914	2e-4	P
TobEA mid/early senescent leaf	Atlas 181.CEL	10.04842	2e-4	P
	Atlas 176.CEL	9.676322	2e-4	P
	Atlas 184.CEL	9.447109	2e-4	P
	Atlas 188.CEL	10.016787	7e-4	P
	Atlas 192.CEL	10.0715	2e-4	P
TobEA mid/late senescent leaf	Atlas 180.CEL	9.753327	2e-4	P
	Atlas 189.CEL	9.85479	2e-4	P
	Atlas 177.CEL	9.513966	2e-4	P
	Atlas 193.CEL	9.763905	2e-4	P
	Atlas 185.CEL	9.640504	2e-4	P
TobEA young leaf	Atlas 56.CEL	9.879734	2e-4	P
	Atlas 53.CEL	9.779095	2e-4	P
	Atlas 54.CEL	9.411886	2e-4	P
	Atlas 55.CEL	9.6647415	2e-4	P
	Atlas 57.CEL	9.776834	2e-4	P
TobEA mature root	Atlas 64.CEL	10.077945	2e-4	P
	Atlas 65.CEL	10.008793	2e-4	P
	Atlas 66.CEL	9.902662	2e-4	P
	Atlas 63.CEL	10.121193	2e-4	P
	Atlas 67.CEL	10.153355	2e-4	P
TobEA young root	Atlas 39.CEL	9.879143	2e-4	P
	Atlas 40.CEL	10.22346	2e-4	P
	Atlas 44.CEL	9.808643	2e-4	P
	Atlas 41.CEL	9.923079	2e-4	P
	Atlas 42.CEL	9.980148	2e-4	P
	Atlas 43.CEL	9.891794	2e-4	P
TobEA seed	Atlas 98.CEL	8.015449	0.001	P
	Atlas 76.CEL	8.150231	0.001	P
	Atlas 79.CEL	8.115697	0.001	P
	Atlas 77.CEL	8.047444	0.001	P
	Atlas 78.CEL	8.596564	7e-4	P
	Atlas 99.CEL	8.2774935	0.002	P
TobEA young shoot	Atlas 87.CEL	9.691665	2e-4	P
	Atlas 88.CEL	9.724543	2e-4	P
	Atlas 90.CEL	9.476431	2e-4	P
	Atlas 89.CEL	9.710524	2e-4	P
	Atlas 86.CEL	9.728369	2e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (54 templates correlated)

Template	Pearson	Internal Mapping
DV160150_at	0.8874117	SGN-U498352
EB684268_s_at	0.8650412	SGN-U449836
BP529896_at	0.8625294	SGN-U423368
EB450971_at	0.86214	SGN-U423368
C6_s_at	0.861412	SGN-U430415
TT36_J22_at	0.8554974	SGN-U443899
C4907_at	0.8532562	SGN-U421358
C4536_s_at	0.8425425	SGN-U444357
EB449841_s_at	0.8413713	SGN-U422260
C11167_s_at	0.8404708	SGN-U446269
BP130707_at	0.8381865	SGN-U428283
CV020194_s_at	0.837624	SGN-U446269
EB449841_at	0.836161	SGN-U422260
EB447741_s_at	0.8333922	SGN-U445084
TT09_C19_at	0.832877	SGN-U432160
C9903_at	0.8324976	SGN-U434883
EB447496_at	0.8318038	SGN-U451089
CV020354_at	0.8304565	SGN-U437172
C4985_at	0.8266682	SGN-U423368
TT33_O03_s_at	0.8259025	SGN-U436809
C4379_at	0.8233266	SGN-U442696
TT38_A22_s_at	0.8231125	SGN-U446987
C2266_s_at	0.8228067	SGN-U442695
EB444325_at	0.8222258	SGN-U431811
EB452026_s_at	0.8210064	SGN-U444768
EB436929_at	0.8202945	SGN-U450380
C4939_at	0.8193712	SGN-U422259
BP527117_s_at	0.8192428	SGN-U451060
C4280_s_at	0.8186954	SGN-U444790
EB683193_at	0.818376	SGN-U430415
C2489_s_at	0.8182002	SGN-U444378
C10409_at	0.8165058	SGN-U441233
C5133_at	0.8157617	SGN-U431105
EB440424_at	0.8151475	SGN-U431082
EB447496_s_at	0.8150608	SGN-U451089
TT36_O05_s_at	0.8136564	SGN-U465447
EB427395_at	0.8134648	SGN-U464926
C2653_at	0.8132468	SGN-U443543
C1827_s_at	0.813043	SGN-U447802
C9641_at	0.8129313	SGN-U444641
TT01_D10_at	0.8101803	SGN-U449509
CV021602_s_at	0.8091836	SGN-U425049
C6724_s_at	0.8070863	SGN-U446457
C4536_at	0.8069039	SGN-U444357
EB448628_at	0.8067571	SGN-U432710
C3996_at	0.8065224	SGN-U439701
EB442375_at	0.8060561	SGN-U436374
C5050_s_at	0.8048236	SGN-U446656
EB440052_at	0.8042113	SGN-U427388
C3760_at	0.8039726	SGN-U445176
BP132452_at	0.8033464	SGN-U459432
BP132436_at	0.8029332	SGN-U439887
CV016813_s_at	0.801782	SGN-U428239
C5196_s_at	0.8009132	SGN-U431157

Correlation Type:

Negative correlations (3 templates correlated)

Template	Pearson	Internal Mapping
DW001963_s_at	-0.828521	SGN-U450992
C10125_at	-0.8095007	SGN-U449062
C4226_at	-0.8030983	SGN-U449172

Your Lists

Public Lists

List Contents

List Validation Report: Failed

Elements not found:

Optional: Add Missing Accessions to A List

Mismatched case

Click the Adjust Case button to align the case in the list with what is in the database.

Multiple mismatched case

Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.

List elements matching a synonym

Multiple synonym matches

Multiple synonym matches have to be resolved manually. Contact database administrators if necessary.

Fuzzy Search Results

Synonym Search Results

Create a New List from Unique Names:

Available Seedlots

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Create a New List from Selected Seedlots:

Manage Seedlots

Your Datasets

Public Datasets

Dataset Contents

Dataset Validation Failed

Elements not found:

Your Calendar

Having trouble viewing events on the calendar?
Are you associated with the breeding program you are interested in viewing?

Calendar Permissions

Add New Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

http://www.

Event Info

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

Edit Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

Login

Show Password

Forgot Username

If you've forgotten your username, enter your email address below. An email will be sent with any account username(s) associated with your email address.

Email Address

Reset Password

To reset your password, please enter your email address. A link will be sent to that address with a link that will enable you to reset your password.

Email Address

Create New User

Notice

Before creating a new account, please check if you already have an account using the directory search.
A link will be emailed to you. Please click on it to activate the account.
All fields are required.

First Name:

Last Name:

Organization:

Username:

Username must be at least 7 characters long.

Password:

Password must be at least 7 characters long and different from your username.

Confirm Password:

Password must be at least 7 characters long and different from your username.

Email Address:

An email will be sent to this address requiring you to confirm its receipt to activate your account.