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Expression Template: EB430860_at

Template Basic Information

Template name:	EB430860_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U451255
External db links:	GenBank: EB430860

Annotations for unigene SGN-U451255 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157359612\|emb\|CAO67829.1\|	557	7e-157	91.89	885 bp (57.2%)	1
Description:	unnamed
arabidopsis	blastx	At3G20000.1	455	3e-128	76.12	864 bp (55.9%)	1
Description:	Symbols: TOM40 \| TOM40 (translocase of the outer mitochondrial membrane 40); voltage-gated ion&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
EB430860_at_probe_01	PM	data not available	data not available	1
EB430860_at_probe_02	PM	data not available	data not available	1
EB430860_at_probe_03	PM	data not available	data not available	1
EB430860_at_probe_04	PM	data not available	data not available	1
EB430860_at_probe_05	PM	data not available	data not available	1
EB430860_at_probe_06	PM	data not available	data not available	1
EB430860_at_probe_07	PM	data not available	data not available	1
EB430860_at_probe_08	PM	data not available	data not available	1
EB430860_at_probe_09	PM	data not available	data not available	1
EB430860_at_probe_10	PM	data not available	data not available	1
EB430860_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	9.70	9.69	0.16	0.02
	TobEA vegetative shoot apex	shoot apex	8	8	9.65	9.64	0.23	0.02
	TobEA closed bud	flower bud	5	5	9.32	9.38	0.19	0.02
	TobEA open bud	flower bud	5	5	8.94	8.97	0.28	0.03
	TobEA cotyledons	cotyledon	5	5	8.64	8.52	0.24	0.03
	TobEA flower	flower	5	5	7.51	7.36	0.24	0.03
	TobEA lower stem	stem internode	5	5	9.61	9.64	0.23	0.02
	TobEA upper stem	stem internode	5	5	9.92	9.90	0.15	0.02
	TobEA cauline leaf	cauline leaf	5	5	7.36	7.31	0.36	0.05
	TobEA early senescent leaf	adult vascular leaf	5	5	8.65	8.88	0.56	0.06
	TobEA late senescent leaf	adult vascular leaf	5	5	8.00	7.99	0.19	0.02
	TobEA mature leaf	adult vascular leaf	5	5	7.45	7.42	0.42	0.06
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	8.15	8.05	0.27	0.03
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	7.46	7.62	0.54	0.07
	TobEA young leaf	juvenile vascular leaf	5	5	9.58	9.52	0.20	0.02
	TobEA mature root	root	5	5	9.92	9.83	0.45	0.05
	TobEA young root	root	6	6	9.78	9.75	0.50	0.05
	TobEA seed	seed	6	6	7.11	7.24	0.48	0.07
	TobEA young shoot	shoot system	5	5	8.99	8.93	0.40	0.04

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 144.CEL	9.6898365	7e-4	P
	Atlas 147.CEL	9.486432	2e-4	P
	Atlas 143.CEL	9.947715	7e-4	P
	Atlas 145.CEL	9.694907	2e-4	P
	Atlas 146.CEL	9.672672	2e-4	P
TobEA vegetative shoot apex	Atlas 248.CEL	9.367741	2e-4	P
	Atlas 249.CEL	9.49103	2e-4	P
	Atlas 250.CEL	9.534079	2e-4	P
	Atlas 246.CEL	9.412421	2e-4	P
	Atlas 247.CEL	9.845804	2e-4	P
	Atlas 59.CEL	9.752375	2e-4	P
	Atlas 58.CEL	10.007582	7e-4	P
	Atlas 61.CEL	9.825119	2e-4	P
TobEA closed bud	Atlas 195.CEL	9.417777	2e-4	P
	Atlas 161.CEL	9.228046	2e-4	P
	Atlas 173.CEL	9.045328	2e-4	P
	Atlas 199.CEL	9.378221	2e-4	P
	Atlas 163.CEL	9.528916	2e-4	P
TobEA open bud	Atlas 171.CEL	9.238036	2e-4	P
	Atlas 244.CEL	8.681079	7e-4	P
	Atlas 169.CEL	8.634755	2e-4	P
	Atlas 159.CEL	8.9712715	7e-4	P
	Atlas 167.CEL	9.170461	2e-4	P
TobEA cotyledons	Atlas 69.CEL	9.05188	7e-4	P
	Atlas 71.CEL	8.520889	0.004	P
	Atlas 74.CEL	8.474557	7e-4	P
	Atlas 70.CEL	8.484613	0.002	P
	Atlas 75.CEL	8.653134	2e-4	P
TobEA flower	Atlas 198.CEL	7.795079	0.001	P
	Atlas 158.CEL	7.7629805	7e-4	P
	Atlas 197.CEL	7.364278	2e-4	P
	Atlas 165.CEL	7.3196416	7e-4	P
	Atlas 166.CEL	7.32987	0.002	P
TobEA lower stem	Atlas 174.CEL	9.85178	2e-4	P
	Atlas 200.CEL	9.55533	2e-4	P
	Atlas 172.CEL	9.6414175	2e-4	P
	Atlas 245.CEL	9.726584	2e-4	P
	Atlas 164.CEL	9.254111	2e-4	P
TobEA upper stem	Atlas 168.CEL	9.937387	2e-4	P
	Atlas 160.CEL	9.88169	2e-4	P
	Atlas 162.CEL	9.898737	2e-4	P
	Atlas 170.CEL	9.731576	2e-4	P
	Atlas 196.CEL	10.152092	7e-4	P
TobEA cauline leaf	Atlas 229.CEL	7.3061967	7e-4	P
	Atlas 233.CEL	7.9369345	7e-4	P
	Atlas 231.CEL	7.21374	2e-4	P
	Atlas 235.CEL	7.357327	2e-4	P
	Atlas 237.CEL	6.962796	7e-4	P
TobEA early senescent leaf	Atlas 182.CEL	8.295869	2e-4	P
	Atlas 183.CEL	9.315472	2e-4	P
	Atlas 175.CEL	7.89344	0.001	P
	Atlas 191.CEL	8.875724	7e-4	P
	Atlas 187.CEL	8.891123	7e-4	P
TobEA late senescent leaf	Atlas 179.CEL	7.7085824	0.004	P
	Atlas 186.CEL	7.9276786	7e-4	P
	Atlas 194.CEL	7.992263	0.002	P
	Atlas 178.CEL	8.17776	7e-4	P
	Atlas 190.CEL	8.171045	0.002	P
TobEA mature leaf	Atlas 93.CEL	7.41211	2e-4	P
	Atlas 96.CEL	6.8619227	0.001	P
	Atlas 94.CEL	7.4174905	2e-4	P
	Atlas 95.CEL	8.048847	0.002	P
	Atlas 97.CEL	7.498002	2e-4	P
TobEA mid/early senescent leaf	Atlas 176.CEL	8.479951	7e-4	P
	Atlas 184.CEL	8.034853	2e-4	P
	Atlas 192.CEL	7.820294	2e-4	P
	Atlas 181.CEL	8.045623	0.003	P
	Atlas 188.CEL	8.355983	2e-4	P
TobEA mid/late senescent leaf	Atlas 180.CEL	6.549633	0.001	P
	Atlas 185.CEL	7.8575687	7e-4	P
	Atlas 189.CEL	7.823994	2e-4	P
	Atlas 177.CEL	7.623314	7e-4	P
	Atlas 193.CEL	7.4235306	0.002	P
TobEA young leaf	Atlas 53.CEL	9.44464	2e-4	P
	Atlas 54.CEL	9.422712	2e-4	P
	Atlas 57.CEL	9.516205	2e-4	P
	Atlas 55.CEL	9.6095495	2e-4	P
	Atlas 56.CEL	9.908208	2e-4	P
TobEA mature root	Atlas 65.CEL	9.942443	2e-4	P
	Atlas 66.CEL	9.544085	7e-4	P
	Atlas 67.CEL	9.608902	2e-4	P
	Atlas 64.CEL	9.826711	2e-4	P
	Atlas 63.CEL	10.664975	2e-4	P
TobEA young root	Atlas 39.CEL	10.257718	7e-4	P
	Atlas 41.CEL	10.310134	2e-4	P
	Atlas 42.CEL	10.124615	7e-4	P
	Atlas 44.CEL	9.367064	2e-4	P
	Atlas 40.CEL	9.259013	2e-4	P
	Atlas 43.CEL	9.369109	2e-4	P
TobEA seed	Atlas 99.CEL	7.2405853	7e-4	P
	Atlas 76.CEL	7.462044	7e-4	P
	Atlas 78.CEL	6.5688167	0.006	P
	Atlas 79.CEL	6.476741	0.006	P
	Atlas 98.CEL	7.232187	2e-4	P
	Atlas 77.CEL	7.654242	2e-4	P
TobEA young shoot	Atlas 87.CEL	8.46818	0.001	P
	Atlas 88.CEL	8.93473	0.001	P
	Atlas 89.CEL	9.5209	0.001	P
	Atlas 90.CEL	9.208734	7e-4	P
	Atlas 86.CEL	8.798683	2e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (46 templates correlated)

Template	Pearson	Internal Mapping
DV160685_at	0.9273111	SGN-U443209
EB446736_at	0.9177216	SGN-U443209
C10620_at	0.9073743	SGN-U449733
DW001693_at	0.886468	SGN-U428885
EB681961_at	0.8676186	SGN-U426234
EB451040_at	0.8575637	SGN-U467076
EB678890_at	0.8507718	SGN-U423723
BP129857_at	0.8402383	SGN-U461194
EB451730_s_at	0.8391554	SGN-U431045
C5109_at	0.8369982	SGN-U443740
EB677653_at	0.8358612	SGN-U436369
C4388_at	0.8354686	SGN-U422163
DW001236_at	0.834862	No available
C5023_at	0.8345585	SGN-U428718
BP527968_at	0.8342208	SGN-U443740
C10319_s_at	0.8281839	SGN-U443402
C4213_at	0.8239715	SGN-U444012
C4266_at	0.8235255	SGN-U426687
TT09_L18_at	0.8222144	SGN-U427707
C5365_s_at	0.8216574	SGN-U440288
DW004910_at	0.8216542	SGN-U448033
BP534281_at	0.8215388	SGN-U421471
EB440347_s_at	0.8210558	SGN-U443740
C6931_at	0.8198423	SGN-U425839
C11571_at	0.8182694	SGN-U430127
C9724_at	0.8170581	SGN-U436596
EB684101_at	0.8166366	SGN-U424626
C11022_at	0.8142742	SGN-U450419
C215_s_at	0.8138999	SGN-U422165
C3706_at	0.812773	SGN-U471453
TT48_L09_at	0.8126802	SGN-U441533
C2135_at	0.8122542	SGN-U430304
C10894_at	0.8114166	SGN-U438161
CV016825_at	0.8113641	SGN-U442969
EB440175_at	0.810511	SGN-U435438
BP534335_at	0.808595	SGN-U431285
EB445015_at	0.8084802	SGN-U444013
TT23_M15_at	0.8074224	SGN-U467800
TT24_F14_at	0.807244	SGN-U491756
EB446233_at	0.8058634	SGN-U437104
C116_s_at	0.8058546	SGN-U436029
TT06_D01_at	0.8055644	SGN-U447040
EB449462_at	0.8034905	SGN-U421561
TT02_G02_at	0.8013074	SGN-U467799
TT17_B07_at	0.8009169	SGN-U437968
TT41_K12_at	0.8000483	SGN-U426441

Correlation Type:

Negative correlations (14 templates correlated)

Template	Pearson	Internal Mapping
EB429489_at	-0.8459824	SGN-U424182
EB429489_s_at	-0.8373311	SGN-U424182
C4174_s_at	-0.8358905	SGN-U432209
C2694_at	-0.8324486	SGN-U422636
C9928_at	-0.8321344	SGN-U445319
EB681249_at	-0.8317028	SGN-U500155
C351_at	-0.8217043	SGN-U436502
C942_at	-0.8145503	SGN-U432209
AB049335_at	-0.8139271	SGN-U464258
C10887_at	-0.8127952	No available
C1026_at	-0.8112075	SGN-U437882
BP535324_at	-0.8084161	SGN-U447886
C3733_at	-0.8038316	SGN-U422637
C8836_at	-0.802256	SGN-U440703

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