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Expression Template: EB430230_at

Template Basic Information

Template name:	EB430230_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U444156
External db links:	GenBank: EB430230

Annotations for unigene SGN-U444156 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|13516451\|dbj\|BAB40310.1\|	317	5e-85	98.68	456 bp (54.2%)	3
Description:	ubiquitin-conjugating enzyme (E2) [Nicotiana tabacum] >gi58578278\|emb\|CAI48075.1\| ubiquitin-con&hellip
arabidopsis	blastx	At2G02760.1	310	9e-85	95.39	456 bp (54.2%)	3
Description:	Symbols: UBC2, ATUBC2 \| ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2); ubiquitin-protein ligase \| c&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
EB430230_at_probe_01	PM	data not available	data not available	1
EB430230_at_probe_02	PM	data not available	data not available	1
EB430230_at_probe_03	PM	data not available	data not available	1
EB430230_at_probe_04	PM	data not available	data not available	1
EB430230_at_probe_05	PM	data not available	data not available	1
EB430230_at_probe_06	PM	data not available	data not available	1
EB430230_at_probe_07	PM	data not available	data not available	1
EB430230_at_probe_08	PM	data not available	data not available	1
EB430230_at_probe_09	PM	data not available	data not available	1
EB430230_at_probe_10	PM	data not available	data not available	1
EB430230_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	9.79	9.80	0.20	0.02
	TobEA vegetative shoot apex	shoot apex	8	8	10.47	10.50	0.19	0.02
	TobEA closed bud	flower bud	5	5	10.08	10.10	0.10	0.01
	TobEA open bud	flower bud	5	5	10.12	10.19	0.27	0.03
	TobEA cotyledons	cotyledon	5	5	10.72	10.67	0.35	0.03
	TobEA flower	flower	5	5	10.62	10.61	0.16	0.01
	TobEA lower stem	stem internode	5	5	11.26	11.22	0.19	0.02
	TobEA upper stem	stem internode	5	5	10.59	10.49	0.35	0.03
	TobEA cauline leaf	cauline leaf	5	5	10.06	10.04	0.13	0.01
	TobEA early senescent leaf	adult vascular leaf	5	5	10.54	10.39	0.36	0.03
	TobEA late senescent leaf	adult vascular leaf	5	5	10.83	10.73	0.28	0.03
	TobEA mature leaf	adult vascular leaf	5	5	10.84	10.83	0.11	0.01
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	10.85	10.95	0.39	0.04
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	10.59	10.54	0.47	0.04
	TobEA young leaf	juvenile vascular leaf	5	5	9.31	9.34	0.19	0.02
	TobEA mature root	root	5	5	10.93	10.97	0.11	0.01
	TobEA young root	root	6	6	10.87	10.86	0.08	0.01
	TobEA seed	seed	6	6	9.83	9.79	0.16	0.02
	TobEA young shoot	shoot system	5	5	10.01	9.99	0.13	0.01

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 143.CEL	10.018881	0.002	P
	Atlas 146.CEL	9.9345255	0.001	P
	Atlas 147.CEL	9.66115	0.001	P
	Atlas 144.CEL	9.797723	2e-4	P
	Atlas 145.CEL	9.52496	7e-4	P
TobEA vegetative shoot apex	Atlas 246.CEL	10.479738	0.001	P
	Atlas 250.CEL	10.365323	2e-4	P
	Atlas 61.CEL	10.423253	2e-4	P
	Atlas 247.CEL	10.514417	2e-4	P
	Atlas 59.CEL	10.702237	7e-4	P
	Atlas 248.CEL	10.583805	7e-4	P
	Atlas 249.CEL	10.624454	2e-4	P
	Atlas 58.CEL	10.082154	7e-4	P
TobEA closed bud	Atlas 161.CEL	10.065004	0.001	P
	Atlas 173.CEL	10.161516	0.001	P
	Atlas 163.CEL	10.097441	7e-4	P
	Atlas 195.CEL	9.908923	7e-4	P
	Atlas 199.CEL	10.146555	0.001	P
TobEA open bud	Atlas 169.CEL	10.222724	2e-4	P
	Atlas 159.CEL	10.194549	2e-4	P
	Atlas 167.CEL	10.013815	2e-4	P
	Atlas 171.CEL	9.718252	2e-4	P
	Atlas 244.CEL	10.439528	7e-4	P
TobEA cotyledons	Atlas 71.CEL	10.867586	2e-4	P
	Atlas 74.CEL	10.642314	0.001	P
	Atlas 69.CEL	10.670811	2e-4	P
	Atlas 70.CEL	11.20071	2e-4	P
	Atlas 75.CEL	10.2285	2e-4	P
TobEA flower	Atlas 166.CEL	10.758074	7e-4	P
	Atlas 197.CEL	10.762226	7e-4	P
	Atlas 198.CEL	10.373932	2e-4	P
	Atlas 165.CEL	10.606547	7e-4	P
	Atlas 158.CEL	10.585832	7e-4	P
TobEA lower stem	Atlas 164.CEL	11.031856	7e-4	P
	Atlas 174.CEL	11.176042	2e-4	P
	Atlas 200.CEL	11.217953	7e-4	P
	Atlas 172.CEL	11.34235	2e-4	P
	Atlas 245.CEL	11.544333	0.002	P
TobEA upper stem	Atlas 160.CEL	10.286122	0.001	P
	Atlas 170.CEL	10.486019	2e-4	P
	Atlas 196.CEL	10.264554	0.001	P
	Atlas 162.CEL	10.860822	0.001	P
	Atlas 168.CEL	11.034315	2e-4	P
TobEA cauline leaf	Atlas 229.CEL	10.10947	2e-4	P
	Atlas 231.CEL	9.944257	2e-4	P
	Atlas 235.CEL	10.042175	0.001	P
	Atlas 237.CEL	9.95348	7e-4	P
	Atlas 233.CEL	10.258409	0.002	P
TobEA early senescent leaf	Atlas 182.CEL	10.801371	2e-4	P
	Atlas 175.CEL	11.042891	7e-4	P
	Atlas 183.CEL	10.245256	7e-4	P
	Atlas 187.CEL	10.226765	2e-4	P
	Atlas 191.CEL	10.391869	2e-4	P
TobEA late senescent leaf	Atlas 178.CEL	11.223427	2e-4	P
	Atlas 186.CEL	11.010274	0.002	P
	Atlas 190.CEL	10.550855	0.006	P
	Atlas 194.CEL	10.650932	2e-4	P
	Atlas 179.CEL	10.727713	0.002	P
TobEA mature leaf	Atlas 97.CEL	10.805904	0.002	P
	Atlas 93.CEL	10.945689	2e-4	P
	Atlas 95.CEL	10.693089	0.002	P
	Atlas 96.CEL	10.82756	7e-4	P
	Atlas 94.CEL	10.944799	7e-4	P
TobEA mid/early senescent leaf	Atlas 181.CEL	10.175152	7e-4	P
	Atlas 184.CEL	10.948058	7e-4	P
	Atlas 188.CEL	10.845083	0.001	P
	Atlas 192.CEL	11.118241	7e-4	P
	Atlas 176.CEL	11.139271	0.001	P
TobEA mid/late senescent leaf	Atlas 193.CEL	10.976326	7e-4	P
	Atlas 177.CEL	11.150373	7e-4	P
	Atlas 180.CEL	10.540971	2e-4	P
	Atlas 185.CEL	10.207235	0.001	P
	Atlas 189.CEL	10.079757	0.002	P
TobEA young leaf	Atlas 53.CEL	9.0029955	7e-4	P
	Atlas 54.CEL	9.371073	0.001	P
	Atlas 57.CEL	9.344956	0.001	P
	Atlas 55.CEL	9.328321	7e-4	P
	Atlas 56.CEL	9.518811	2e-4	P
TobEA mature root	Atlas 66.CEL	10.993183	0.001	P
	Atlas 64.CEL	10.724746	7e-4	P
	Atlas 67.CEL	10.972527	7e-4	P
	Atlas 63.CEL	10.984609	7e-4	P
	Atlas 65.CEL	10.963054	0.001	P
TobEA young root	Atlas 42.CEL	10.846642	0.001	P
	Atlas 39.CEL	10.964847	7e-4	P
	Atlas 43.CEL	10.968032	0.001	P
	Atlas 40.CEL	10.799297	7e-4	P
	Atlas 41.CEL	10.80489	2e-4	P
	Atlas 44.CEL	10.864556	7e-4	P
TobEA seed	Atlas 98.CEL	9.938277	2e-4	P
	Atlas 77.CEL	9.734271	2e-4	P
	Atlas 99.CEL	10.09579	0.002	P
	Atlas 78.CEL	9.848166	2e-4	P
	Atlas 76.CEL	9.737877	2e-4	P
	Atlas 79.CEL	9.649914	2e-4	P
TobEA young shoot	Atlas 87.CEL	9.82954	2e-4	P
	Atlas 88.CEL	9.952575	7e-4	P
	Atlas 86.CEL	10.15337	0.002	P
	Atlas 89.CEL	9.986883	0.001	P
	Atlas 90.CEL	10.12861	7e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (4 templates correlated)

Template	Pearson	Internal Mapping
C5716_at	0.8335666	SGN-U434374
C9761_s_at	0.8246062	SGN-U444156
BP530427_at	0.8037119	SGN-U442974
DW003823_s_at	0.8012374	SGN-U425644

Correlation Type:

Negative correlations (2 templates correlated)

Template	Pearson	Internal Mapping
C11360_at	-0.811393	No available
CV018672_s_at	-0.8010746	SGN-U446593

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