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Expression Template: EB425808_s_at

Template Basic Information

Template name:	EB425808_s_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U436460
External db links:	GenBank: EB425808

Annotations for unigene SGN-U436460 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|34484310\|gb\|AAQ72788.1\|	293	5e-133	82.56	516 bp (43.5%)	3
Description:	hypersensitive-induced response protein [Cucumis sativus]
arabidopsis	blastx	At1G69840.4	292	3e-132	87.35	498 bp (42.0%)	3
Description:	band 7 family protein \| chr1:26297595-26298813 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
EB425808_s_at_probe_01	PM	data not available	data not available	1
EB425808_s_at_probe_02	PM	data not available	data not available	1
EB425808_s_at_probe_03	PM	data not available	data not available	1
EB425808_s_at_probe_04	PM	data not available	data not available	1
EB425808_s_at_probe_05	PM	data not available	data not available	1
EB425808_s_at_probe_06	PM	data not available	data not available	1
EB425808_s_at_probe_07	PM	data not available	data not available	1
EB425808_s_at_probe_08	PM	data not available	data not available	1
EB425808_s_at_probe_09	PM	data not available	data not available	1
EB425808_s_at_probe_10	PM	data not available	data not available	1
EB425808_s_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	10.47	10.46	0.15	0.01
	TobEA vegetative shoot apex	shoot apex	8	8	9.77	9.74	0.12	0.01
	TobEA closed bud	flower bud	5	5	10.16	10.16	0.05	0.00
	TobEA open bud	flower bud	5	5	10.00	10.06	0.13	0.01
	TobEA cotyledons	cotyledon	5	5	8.74	8.72	0.24	0.03
	TobEA flower	flower	5	5	9.78	9.73	0.12	0.01
	TobEA lower stem	stem internode	5	5	10.25	10.23	0.13	0.01
	TobEA upper stem	stem internode	5	5	9.50	9.52	0.09	0.01
	TobEA cauline leaf	cauline leaf	5	5	10.22	10.17	0.20	0.02
	TobEA early senescent leaf	adult vascular leaf	5	5	10.33	10.21	0.25	0.02
	TobEA late senescent leaf	adult vascular leaf	5	5	10.67	10.66	0.26	0.02
	TobEA mature leaf	adult vascular leaf	5	5	10.16	10.14	0.14	0.01
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	10.52	10.65	0.50	0.05
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	10.60	10.57	0.25	0.02
	TobEA young leaf	juvenile vascular leaf	5	5	9.69	9.60	0.17	0.02
	TobEA mature root	root	5	5	9.58	9.63	0.17	0.02
	TobEA young root	root	6	6	9.16	9.16	0.19	0.02
	TobEA seed	seed	6	6	10.59	10.59	0.10	0.01
	TobEA young shoot	shoot system	5	5	9.07	9.11	0.15	0.02

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 145.CEL	10.677055	2e-4	P
	Atlas 146.CEL	10.348869	2e-4	P
	Atlas 143.CEL	10.307913	2e-4	P
	Atlas 144.CEL	10.536657	2e-4	P
	Atlas 147.CEL	10.460703	2e-4	P
TobEA vegetative shoot apex	Atlas 249.CEL	9.731976	2e-4	P
	Atlas 250.CEL	9.888904	2e-4	P
	Atlas 59.CEL	10.003289	7e-4	P
	Atlas 61.CEL	9.677227	2e-4	P
	Atlas 246.CEL	9.740291	2e-4	P
	Atlas 247.CEL	9.635517	7e-4	P
	Atlas 58.CEL	9.748821	2e-4	P
	Atlas 248.CEL	9.763051	2e-4	P
TobEA closed bud	Atlas 163.CEL	10.081402	2e-4	P
	Atlas 195.CEL	10.202372	2e-4	P
	Atlas 199.CEL	10.162632	2e-4	P
	Atlas 161.CEL	10.155698	2e-4	P
	Atlas 173.CEL	10.195342	2e-4	P
TobEA open bud	Atlas 159.CEL	9.879256	2e-4	P
	Atlas 171.CEL	10.064562	2e-4	P
	Atlas 244.CEL	9.847063	7e-4	P
	Atlas 169.CEL	10.11646	2e-4	P
	Atlas 167.CEL	10.083233	2e-4	P
TobEA cotyledons	Atlas 69.CEL	9.063604	0.001	P
	Atlas 74.CEL	8.718413	0.003	P
	Atlas 70.CEL	8.612115	0.004	P
	Atlas 75.CEL	8.431454	0.006	P
	Atlas 71.CEL	8.866248	0.002	P
TobEA flower	Atlas 158.CEL	9.81119	2e-4	P
	Atlas 197.CEL	9.730623	2e-4	P
	Atlas 166.CEL	9.731432	2e-4	P
	Atlas 165.CEL	9.967774	2e-4	P
	Atlas 198.CEL	9.650003	2e-4	P
TobEA lower stem	Atlas 172.CEL	10.45811	2e-4	P
	Atlas 200.CEL	10.285595	2e-4	P
	Atlas 164.CEL	10.149077	2e-4	P
	Atlas 174.CEL	10.228061	2e-4	P
	Atlas 245.CEL	10.141507	2e-4	P
TobEA upper stem	Atlas 160.CEL	9.623601	7e-4	P
	Atlas 162.CEL	9.534609	2e-4	P
	Atlas 168.CEL	9.462084	2e-4	P
	Atlas 196.CEL	9.379852	2e-4	P
	Atlas 170.CEL	9.519288	2e-4	P
TobEA cauline leaf	Atlas 233.CEL	10.399605	2e-4	P
	Atlas 237.CEL	10.108557	2e-4	P
	Atlas 231.CEL	9.968255	2e-4	P
	Atlas 229.CEL	10.451158	2e-4	P
	Atlas 235.CEL	10.168303	2e-4	P
TobEA early senescent leaf	Atlas 183.CEL	10.548429	2e-4	P
	Atlas 191.CEL	10.136056	2e-4	P
	Atlas 175.CEL	10.206376	2e-4	P
	Atlas 187.CEL	10.650378	2e-4	P
	Atlas 182.CEL	10.094854	2e-4	P
TobEA late senescent leaf	Atlas 190.CEL	10.657453	2e-4	P
	Atlas 178.CEL	10.356866	2e-4	P
	Atlas 186.CEL	10.495591	2e-4	P
	Atlas 179.CEL	11.013432	2e-4	P
	Atlas 194.CEL	10.805861	2e-4	P
TobEA mature leaf	Atlas 96.CEL	10.387564	2e-4	P
	Atlas 93.CEL	10.139219	2e-4	P
	Atlas 97.CEL	10.010078	2e-4	P
	Atlas 94.CEL	10.090148	2e-4	P
	Atlas 95.CEL	10.175212	2e-4	P
TobEA mid/early senescent leaf	Atlas 181.CEL	11.187337	2e-4	P
	Atlas 184.CEL	9.919722	2e-4	P
	Atlas 176.CEL	10.12931	2e-4	P
	Atlas 188.CEL	10.708318	2e-4	P
	Atlas 192.CEL	10.650038	2e-4	P
TobEA mid/late senescent leaf	Atlas 180.CEL	10.571643	2e-4	P
	Atlas 189.CEL	10.828405	2e-4	P
	Atlas 177.CEL	10.206911	2e-4	P
	Atlas 193.CEL	10.570447	2e-4	P
	Atlas 185.CEL	10.805634	2e-4	P
TobEA young leaf	Atlas 53.CEL	9.79351	2e-4	P
	Atlas 55.CEL	9.595443	0.001	P
	Atlas 56.CEL	9.571988	2e-4	P
	Atlas 54.CEL	9.5463085	2e-4	P
	Atlas 57.CEL	9.94627	2e-4	P
TobEA mature root	Atlas 64.CEL	9.651067	2e-4	P
	Atlas 67.CEL	9.294006	2e-4	P
	Atlas 63.CEL	9.608762	2e-4	P
	Atlas 65.CEL	9.724955	2e-4	P
	Atlas 66.CEL	9.633602	2e-4	P
TobEA young root	Atlas 39.CEL	9.144807	2e-4	P
	Atlas 42.CEL	8.924534	2e-4	P
	Atlas 41.CEL	9.386777	2e-4	P
	Atlas 44.CEL	8.948426	2e-4	P
	Atlas 40.CEL	9.183472	2e-4	P
	Atlas 43.CEL	9.344788	2e-4	P
TobEA seed	Atlas 77.CEL	10.554302	2e-4	P
	Atlas 78.CEL	10.609514	2e-4	P
	Atlas 79.CEL	10.692007	2e-4	P
	Atlas 76.CEL	10.570838	2e-4	P
	Atlas 98.CEL	10.697083	2e-4	P
	Atlas 99.CEL	10.435833	2e-4	P
TobEA young shoot	Atlas 90.CEL	9.107205	0.001	P
	Atlas 87.CEL	9.009493	7e-4	P
	Atlas 88.CEL	8.863402	0.002	P
	Atlas 86.CEL	9.272435	0.001	P
	Atlas 89.CEL	9.116579	7e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (86 templates correlated)

Template	Pearson	Internal Mapping
TT15_K23_at	0.9284555	SGN-U458984
C4234_at	0.9064245	SGN-U436459
DW001476_s_at	0.9052989	SGN-U472724
EB435274_at	0.8950865	SGN-U428640
C8600_at	0.8914488	SGN-U435068
C2819_s_at	0.8909823	SGN-U437026
C10845_at	0.8756765	SGN-U442406
DW001352_at	0.8748495	SGN-U429208
C6952_at	0.8742175	SGN-U439494
C2869_s_at	0.8719934	SGN-U448264
C9549_at	0.864788	SGN-U421476
EB444726_s_at	0.8619918	SGN-U435531
EB443063_at	0.8610007	SGN-U434351
C5502_s_at	0.860439	SGN-U425394
C10301_at	0.858237	No available
EB679439_s_at	0.8563842	SGN-U432000
C10489_s_at	0.8557586	SGN-U447321
C10964_at	0.8479712	No available
EB439586_at	0.8452135	SGN-U450430
EB679557_s_at	0.8436572	SGN-U444974
BP531457_at	0.8413765	SGN-U421130
DW002611_at	0.8406805	SGN-U432384
C8448_at	0.840523	SGN-U437026
C3360_at	0.8401416	No available
C10597_at	0.8366828	No available
EB430226_at	0.8362934	SGN-U447052
C6886_at	0.8351457	SGN-U442266
TT40_F05_at	0.8339313	SGN-U448167
BP533019_at	0.8338031	SGN-U440126
TT16_J09_at	0.8334097	SGN-U423778
C7965_at	0.8325512	SGN-U449501
EB679481_at	0.8310874	SGN-U426041
C2452_s_at	0.8309576	SGN-U433067
EB679315_at	0.8298028	SGN-U495951
EB679191_s_at	0.8275215	SGN-U426436
BP534952_at	0.8225914	SGN-U433108
TT04_E08_at	0.8198307	SGN-U456683
C10786_s_at	0.8193392	SGN-U459353
BP532086_at	0.8192702	SGN-U446371
TT37_G03_at	0.8188404	SGN-U442639
EB682890_at	0.8177584	SGN-U442641
C268_at	0.8171597	SGN-U440595
DW002072_at	0.816762	SGN-U441942
C11216_at	0.8163773	SGN-U449526
DW003716_at	0.8152248	SGN-U427251
AJ294474_at	0.8146777	SGN-U427203
C11675_at	0.8146134	SGN-U485165
TT36_C05_s_at	0.814491	SGN-U462806
TT22_C21_s_at	0.8144081	SGN-U451693
TT37_I21_at	0.814244	SGN-U431693
TT13_N20_s_at	0.8141519	SGN-U471400
BP533969_at	0.8124927	SGN-U445199
C8272_at	0.8116415	SGN-U449729
C7195_at	0.8098228	SGN-U442810
C187_at	0.809766	SGN-U438575
DW000064_at	0.8091447	SGN-U423565
C3048_at	0.8090196	SGN-U448412
C3835_at	0.8082994	SGN-U448138
EB444681_at	0.8082326	SGN-U474190
C3927_at	0.8081338	SGN-U425075
EB431405_at	0.8081248	SGN-U448958
BP533834_at	0.8069494	SGN-U445138
EB427135_at	0.8060191	SGN-U442464
BP134210_at	0.8059897	SGN-U422818
EB450062_at	0.8058901	SGN-U426436
C5051_at	0.8053074	SGN-U432886
C2558_at	0.805179	SGN-U429737
C6636_at	0.8048958	SGN-U428963
EB681708_s_at	0.8046836	SGN-U450513
BP531997_at	0.8044158	SGN-U498603
DW002969_at	0.8031043	SGN-U437026
TT39_O20_at	0.8028941	SGN-U455862
EB679157_s_at	0.8028342	SGN-U447507
BP530548_at	0.8025456	SGN-U462315
EB446377_at	0.8022337	SGN-U468587
C5359_s_at	0.8021734	SGN-U426563
TT16_N12_s_at	0.8020962	SGN-U473194
DV158623_at	0.8020578	SGN-U433881
BP533293_s_at	0.8018982	SGN-U443881
C6422_at	0.8018591	SGN-U435698
TT19_H15_at	0.801723	SGN-U479123
TT22_H16_at	0.8014954	SGN-U474086
C1078_at	0.8012697	SGN-U440197
TT17_M24_s_at	0.8012371	SGN-U430409
BP531324_s_at	0.8006657	SGN-U449242
C9715_s_at	0.8003908	No available

Correlation Type:

Negative correlations (14 templates correlated)

Template	Pearson	Internal Mapping
EB447074_at	-0.9007441	SGN-U465563
DV160835_x_at	-0.8811537	SGN-U449257
C9272_at	-0.8453749	SGN-U441631
C5907_s_at	-0.8417681	SGN-U437225
C1417_at	-0.8358664	SGN-U445034
C9891_s_at	-0.8357523	SGN-U429774
C1417_x_at	-0.8298292	SGN-U445034
EB446266_at	-0.8298081	SGN-U421897
BP535437_at	-0.8113902	SGN-U429869
C9941_x_at	-0.8089715	SGN-U447809
C9941_at	-0.805617	SGN-U447809
C409_at	-0.8053892	SGN-U449257
C4885_at	-0.8021437	SGN-U439464
C8853_at	-0.8004163	SGN-U445426

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