Sol Genomics Network

clone(s) in cart (order)

Old browser version detected

This site is optimized for modern web browsers

Please upgrade your browser

Sorry!, some features may not work in outdated browsers

Sol Genomics Network

Search
- Organisms
- Loci & Genes
- Genome features
- Expression
- Accessions and Plots
- QTLs
- Markers
- BACs
- Unigenes
- ESTs and libraries
- Gene Families
- Insitu database
- Images
- People
- FAQ
Maps
- All Maps
- The New Comparative Viewer
- Comparative Viewer
- Submit a map
- Tomato
- Tomato-EXPEN 2000
- Tomato-Kazusa/SolCAP
- Tomato QTLs
- Tomato physical map
- Tomato FPC contig map
- Tomato IL map
- Tomato FISH map
- Tomato AGP map
- Pepper
- Pepper COSII map
- Pepper-AC99
- Pepper-FA03
- Eggplant
- Eggplant COSII map
- Eggplant-LXM 2002
- More Maps
- Potato-TXB 1992
- Tobacco SSR 2007
- Arabidopsis COSII
Genomes
- Sequenced Accessions
- Completed Genomes
- Tomato
- Potato
- Pepper
- Eggplant
- Solanum pennellii
- Solanum lycopersicoides
- Solanum pimpinellifolium
- Solanum lycopersicum var. cerasiforme
- Iochroma cyaneum
- Draft Genomes
- Nicotiana attenuata
- Nicotiana benthamiana
- Nicotiana tabacum
- Petunia axillaris
- Petunia inflata
- Solanum chilense
- Coffea humblotiana
- Resequencing projects
- Solanum lycopersicum inbreds
- 150 Tomato Genome Resequencing Project
- BGI Tomato 360 genomes
- Varitome Project
Projects
Tools
- Sequence Analysis
- BLAST
- VIGS Tool
- Alignment Analyzer
- Tree Browser
- Motif Finder
- Mapping
- Genome Browser (Jbrowse)
- SolBrowse Comparative genome viewer
- Comparative Map Viewer
- CAPS Designer
- solQTL: QTL Mapping
- Molecular Biology
- In Silico PCR
- Tomato Expression Atlas (TEA)
- Tomato Expression Database (TED)
- Systems Biology
- SolCyc Biochemical Pathways
- Coffee Interactomic Data
- SGN Ontology Browser
- Breeder Tools
- Breeders Toolbox
- Bulk Query
- FTP Site
- Download Genome Sequences
- Download Gene Sequences
- Clones, Arrays, Unigenes and BACs
- Unigene Converter
About
- About
- Contact
- Cite SGN
- Links
- Help
- FAQ
- Become SGN Editor
- Forum
- FTP data
- SlideShare
- Twitter
- Facebook

Advanced

This site uses cookies to provide logins and other features. Please accept the use of cookies by clicking Accept.

Expression Template: DW005191_at

Template Basic Information

Template name:	DW005191_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U470263
External db links:	GenBank: DW005191

Annotations for unigene SGN-U470263 (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits (or none blast was used over this dataset)
arabidopsis	blastx	No significant hits (or none blast was used over this dataset)
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
DW005191_at_probe_01	PM	data not available	data not available	1
DW005191_at_probe_02	PM	data not available	data not available	1
DW005191_at_probe_03	PM	data not available	data not available	1
DW005191_at_probe_04	PM	data not available	data not available	1
DW005191_at_probe_05	PM	data not available	data not available	1
DW005191_at_probe_06	PM	data not available	data not available	1
DW005191_at_probe_07	PM	data not available	data not available	1
DW005191_at_probe_08	PM	data not available	data not available	1
DW005191_at_probe_09	PM	data not available	data not available	1
DW005191_at_probe_10	PM	data not available	data not available	1
DW005191_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	8.76	8.75	0.13	0.01
	TobEA vegetative shoot apex	shoot apex	8	8	8.48	8.45	0.15	0.02
	TobEA closed bud	flower bud	5	5	8.52	8.55	0.11	0.01
	TobEA open bud	flower bud	5	5	8.30	8.36	0.22	0.03
	TobEA cotyledons	cotyledon	5	5	7.84	7.74	0.27	0.03
	TobEA flower	flower	5	5	8.26	8.21	0.18	0.02
	TobEA lower stem	stem internode	5	5	8.43	8.42	0.08	0.01
	TobEA upper stem	stem internode	5	5	8.01	8.11	0.34	0.04
	TobEA cauline leaf	cauline leaf	5	5	8.56	8.61	0.10	0.01
	TobEA early senescent leaf	adult vascular leaf	5	5	8.11	8.11	0.06	0.01
	TobEA late senescent leaf	adult vascular leaf	5	5	8.23	8.35	0.29	0.03
	TobEA mature leaf	adult vascular leaf	5	5	8.45	8.45	0.08	0.01
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	7.86	7.83	0.24	0.03
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	8.16	8.32	0.54	0.07
	TobEA young leaf	juvenile vascular leaf	5	5	8.39	8.41	0.16	0.02
	TobEA mature root	root	5	5	8.07	8.10	0.12	0.01
	TobEA young root	root	6	6	7.89	7.77	0.37	0.05
	TobEA seed	seed	6	6	8.80	8.77	0.23	0.03
	TobEA young shoot	shoot system	5	5	7.87	7.83	0.08	0.01

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 143.CEL	8.972367	2e-4	P
	Atlas 145.CEL	8.751174	2e-4	P
	Atlas 144.CEL	8.666145	2e-4	P
	Atlas 146.CEL	8.657675	2e-4	P
	Atlas 147.CEL	8.757477	2e-4	P
TobEA vegetative shoot apex	Atlas 246.CEL	8.446532	2e-4	P
	Atlas 250.CEL	8.347634	2e-4	P
	Atlas 59.CEL	8.327795	2e-4	P
	Atlas 247.CEL	8.338577	2e-4	P
	Atlas 248.CEL	8.443524	2e-4	P
	Atlas 249.CEL	8.603071	2e-4	P
	Atlas 58.CEL	8.755348	2e-4	P
	Atlas 61.CEL	8.561944	2e-4	P
TobEA closed bud	Atlas 161.CEL	8.546644	2e-4	P
	Atlas 173.CEL	8.388718	2e-4	P
	Atlas 195.CEL	8.584716	2e-4	P
	Atlas 199.CEL	8.442109	2e-4	P
	Atlas 163.CEL	8.660836	2e-4	P
TobEA open bud	Atlas 171.CEL	8.485398	2e-4	P
	Atlas 244.CEL	8.12958	2e-4	P
	Atlas 159.CEL	8.504501	2e-4	P
	Atlas 167.CEL	8.023974	2e-4	P
	Atlas 169.CEL	8.364473	2e-4	P
TobEA cotyledons	Atlas 71.CEL	8.199873	2e-4	P
	Atlas 70.CEL	7.610041	2e-4	P
	Atlas 75.CEL	7.602576	7e-4	P
	Atlas 69.CEL	8.029967	2e-4	P
	Atlas 74.CEL	7.7395177	7e-4	P
TobEA flower	Atlas 198.CEL	8.214523	2e-4	P
	Atlas 158.CEL	8.337777	2e-4	P
	Atlas 165.CEL	8.106238	2e-4	P
	Atlas 197.CEL	8.100496	2e-4	P
	Atlas 166.CEL	8.527166	2e-4	P
TobEA lower stem	Atlas 174.CEL	8.540476	2e-4	P
	Atlas 172.CEL	8.469766	2e-4	P
	Atlas 200.CEL	8.41502	2e-4	P
	Atlas 245.CEL	8.364006	2e-4	P
	Atlas 164.CEL	8.3547125	2e-4	P
TobEA upper stem	Atlas 170.CEL	7.4567404	2e-4	P
	Atlas 160.CEL	8.141312	2e-4	P
	Atlas 162.CEL	8.113888	2e-4	P
	Atlas 196.CEL	8.349832	2e-4	P
	Atlas 168.CEL	7.996676	2e-4	P
TobEA cauline leaf	Atlas 233.CEL	8.639758	2e-4	P
	Atlas 231.CEL	8.526136	2e-4	P
	Atlas 237.CEL	8.624806	2e-4	P
	Atlas 229.CEL	8.612716	2e-4	P
	Atlas 235.CEL	8.403551	2e-4	P
TobEA early senescent leaf	Atlas 175.CEL	8.116175	2e-4	P
	Atlas 183.CEL	8.080055	7e-4	P
	Atlas 187.CEL	8.111421	7e-4	P
	Atlas 191.CEL	8.037009	2e-4	P
	Atlas 182.CEL	8.198844	2e-4	P
TobEA late senescent leaf	Atlas 178.CEL	8.531609	2e-4	P
	Atlas 186.CEL	7.8234105	2e-4	P
	Atlas 194.CEL	8.049601	2e-4	P
	Atlas 179.CEL	8.345391	2e-4	P
	Atlas 190.CEL	8.394403	7e-4	P
TobEA mature leaf	Atlas 93.CEL	8.454091	2e-4	P
	Atlas 95.CEL	8.338743	2e-4	P
	Atlas 96.CEL	8.555426	2e-4	P
	Atlas 94.CEL	8.418182	2e-4	P
	Atlas 97.CEL	8.461749	2e-4	P
TobEA mid/early senescent leaf	Atlas 188.CEL	7.754535	2e-4	P
	Atlas 192.CEL	8.022906	2e-4	P
	Atlas 181.CEL	8.16455	7e-4	P
	Atlas 176.CEL	7.539019	2e-4	P
	Atlas 184.CEL	7.8345447	2e-4	P
TobEA mid/late senescent leaf	Atlas 193.CEL	7.960752	2e-4	P
	Atlas 177.CEL	7.3431425	0.003	P
	Atlas 185.CEL	8.423348	2e-4	P
	Atlas 189.CEL	8.744842	2e-4	P
	Atlas 180.CEL	8.32486	2e-4	P
TobEA young leaf	Atlas 53.CEL	8.54825	2e-4	P
	Atlas 54.CEL	8.202947	2e-4	P
	Atlas 56.CEL	8.408926	2e-4	P
	Atlas 57.CEL	8.540096	2e-4	P
	Atlas 55.CEL	8.230101	2e-4	P
TobEA mature root	Atlas 64.CEL	7.8635097	2e-4	P
	Atlas 65.CEL	8.150493	2e-4	P
	Atlas 63.CEL	8.147073	2e-4	P
	Atlas 66.CEL	8.104169	2e-4	P
	Atlas 67.CEL	8.071938	2e-4	P
TobEA young root	Atlas 40.CEL	7.7412076	2e-4	P
	Atlas 44.CEL	7.7911053	2e-4	P
	Atlas 39.CEL	8.343557	2e-4	P
	Atlas 42.CEL	7.5527825	2e-4	P
	Atlas 41.CEL	8.351652	2e-4	P
	Atlas 43.CEL	7.548716	2e-4	P
TobEA seed	Atlas 76.CEL	8.666292	7e-4	P
	Atlas 98.CEL	9.085972	2e-4	P
	Atlas 99.CEL	8.624091	2e-4	P
	Atlas 78.CEL	8.533713	2e-4	P
	Atlas 79.CEL	8.875605	2e-4	P
	Atlas 77.CEL	9.026562	2e-4	P
TobEA young shoot	Atlas 88.CEL	7.8148932	2e-4	P
	Atlas 87.CEL	7.9922924	2e-4	P
	Atlas 86.CEL	7.8270664	2e-4	P
	Atlas 89.CEL	7.803023	2e-4	P
	Atlas 90.CEL	7.9275155	2e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (5 templates correlated)

Template	Pearson	Internal Mapping
BP131760_s_at	0.8134484	SGN-U424016
C2905_at	0.8122431	SGN-U450240
TT31_P02_at	0.8072114	SGN-U433938
TT08_P01_at	0.8070498	SGN-U442242
C3737_s_at	0.8066048	SGN-U442422

Your Lists

Public Lists

List Contents

List Validation Report: Failed

Elements not found:

Optional: Add Missing Accessions to A List

Mismatched case

Click the Adjust Case button to align the case in the list with what is in the database.

Multiple mismatched case

Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.

List elements matching a synonym

Multiple synonym matches

Multiple synonym matches have to be resolved manually. Contact database administrators if necessary.

Fuzzy Search Results

Synonym Search Results

Create a New List from Unique Names:

Available Seedlots

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Create a New List from Selected Seedlots:

Manage Seedlots

Your Datasets

Public Datasets

Dataset Contents

Dataset Validation Failed

Elements not found:

Your Calendar

Having trouble viewing events on the calendar?
Are you associated with the breeding program you are interested in viewing?

Calendar Permissions

Add New Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

http://www.

Event Info

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

Edit Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

Login

Show Password

Forgot Username

If you've forgotten your username, enter your email address below. An email will be sent with any account username(s) associated with your email address.

Email Address

Reset Password

To reset your password, please enter your email address. A link will be sent to that address with a link that will enable you to reset your password.

Email Address

Create New User

Notice

Before creating a new account, please check if you already have an account using the directory search.
A link will be emailed to you. Please click on it to activate the account.
All fields are required.

First Name:

Last Name:

Organization:

Username:

Username must be at least 7 characters long.

Password:

Password must be at least 7 characters long and different from your username.

Confirm Password:

Password must be at least 7 characters long and different from your username.

Email Address:

An email will be sent to this address requiring you to confirm its receipt to activate your account.