Sol Genomics Network

clone(s) in cart (order)

Old browser version detected

This site is optimized for modern web browsers

Please upgrade your browser

Sorry!, some features may not work in outdated browsers

Sol Genomics Network

Search
- Organisms
- Loci & Genes
- Genome features
- Expression
- Accessions and Plots
- QTLs
- Markers
- BACs
- Unigenes
- ESTs and libraries
- Gene Families
- Insitu database
- Images
- People
- FAQ
Maps
- All Maps
- The New Comparative Viewer
- Comparative Viewer
- Submit a map
- Tomato
- Tomato-EXPEN 2000
- Tomato-Kazusa/SolCAP
- Tomato QTLs
- Tomato physical map
- Tomato FPC contig map
- Tomato IL map
- Tomato FISH map
- Tomato AGP map
- Pepper
- Pepper COSII map
- Pepper-AC99
- Pepper-FA03
- Eggplant
- Eggplant COSII map
- Eggplant-LXM 2002
- More Maps
- Potato-TXB 1992
- Tobacco SSR 2007
- Arabidopsis COSII
Genomes
- Sequenced Accessions
- Completed Genomes
- Tomato
- Potato
- Pepper
- Eggplant
- Solanum pennellii
- Solanum lycopersicoides
- Solanum pimpinellifolium
- Solanum lycopersicum var. cerasiforme
- Iochroma cyaneum
- Draft Genomes
- Nicotiana attenuata
- Nicotiana benthamiana
- Nicotiana tabacum
- Petunia axillaris
- Petunia inflata
- Solanum chilense
- Coffea humblotiana
- Resequencing projects
- Solanum lycopersicum inbreds
- 150 Tomato Genome Resequencing Project
- BGI Tomato 360 genomes
- Varitome Project
Projects
Tools
- Sequence Analysis
- BLAST
- VIGS Tool
- Alignment Analyzer
- Tree Browser
- Motif Finder
- Mapping
- Genome Browser (Jbrowse)
- SolBrowse Comparative genome viewer
- Comparative Map Viewer
- CAPS Designer
- solQTL: QTL Mapping
- Molecular Biology
- In Silico PCR
- Tomato Expression Atlas (TEA)
- Tomato Expression Database (TED)
- Systems Biology
- SolCyc Biochemical Pathways
- Coffee Interactomic Data
- SGN Ontology Browser
- Breeder Tools
- Breeders Toolbox
- Bulk Query
- FTP Site
- Download Genome Sequences
- Download Gene Sequences
- Clones, Arrays, Unigenes and BACs
- Unigene Converter
About
- About
- Contact
- Cite SGN
- Links
- Help
- FAQ
- Become SGN Editor
- Forum
- FTP data
- SlideShare
- Twitter
- Facebook

Advanced

This site uses cookies to provide logins and other features. Please accept the use of cookies by clicking Accept.

Expression Template: DW002216_at

Template Basic Information

Template name:	DW002216_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U424291
External db links:	GenBank: DW002216

Annotations for unigene SGN-U424291 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157343438\|emb\|CAO67944.1\|	437	9e-121	49.78	1386 bp (82.8%)	2
Description:	unnamed
arabidopsis	blastx	At1G73880.1	419	3e-117	45.32	1365 bp (81.6%)	2
Description:	UDP-glucoronosyl/UDP-glucosyl transferase family protein \| chr1:27788804-27790225 FORWARD
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
DW002216_at_probe_01	PM	data not available	data not available	1
DW002216_at_probe_02	PM	data not available	data not available	1
DW002216_at_probe_03	PM	data not available	data not available	1
DW002216_at_probe_04	PM	data not available	data not available	1
DW002216_at_probe_05	PM	data not available	data not available	1
DW002216_at_probe_06	PM	data not available	data not available	1
DW002216_at_probe_07	PM	data not available	data not available	1
DW002216_at_probe_08	PM	data not available	data not available	1
DW002216_at_probe_09	PM	data not available	data not available	1
DW002216_at_probe_10	PM	data not available	data not available	1
DW002216_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	6.38	6.32	0.23	0.04
	TobEA vegetative shoot apex	shoot apex	8	8	5.18	5.55	1.02	0.20
	TobEA closed bud	flower bud	5	5	7.08	7.06	0.37	0.05
	TobEA open bud	flower bud	5	5	8.34	8.29	0.10	0.01
	TobEA cotyledons	cotyledon	5	5	5.28	5.39	1.30	0.25
	TobEA flower	flower	5	5	8.58	8.54	0.16	0.02
	TobEA lower stem	stem internode	5	5	7.09	7.20	0.33	0.05
	TobEA upper stem	stem internode	5	5	6.83	6.58	0.50	0.07
	TobEA cauline leaf	cauline leaf	5	5	7.85	7.87	0.20	0.03
	TobEA early senescent leaf	adult vascular leaf	5	5	7.93	8.02	0.31	0.04
	TobEA late senescent leaf	adult vascular leaf	5	5	8.58	8.66	0.21	0.02
	TobEA mature leaf	adult vascular leaf	5	5	8.06	8.09	0.18	0.02
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	8.06	8.07	0.35	0.04
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	8.23	8.11	0.28	0.03
	TobEA young leaf	juvenile vascular leaf	5	5	5.59	5.75	0.60	0.11
	TobEA mature root	root	5	5	8.86	8.92	0.20	0.02
	TobEA young root	root	6	6	9.10	9.04	0.35	0.04
	TobEA seed	seed	6	6	7.00	6.97	0.28	0.04
	TobEA young shoot	shoot system	5	5	5.34	5.39	0.45	0.08

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 145.CEL	6.585356	0.011	P
	Atlas 146.CEL	6.6243777	0.008	P
	Atlas 143.CEL	6.281722	0.002	P
	Atlas 144.CEL	6.0612154	7e-4	P
	Atlas 147.CEL	6.322953	7e-4	P
TobEA vegetative shoot apex	Atlas 246.CEL	5.619499	0.001	P
	Atlas 249.CEL	5.607906	0.003	P
	Atlas 250.CEL	5.985337	0.019	P
	Atlas 248.CEL	5.438336	0.046	P
	Atlas 61.CEL	5.514569	0.024	P
	Atlas 247.CEL	5.582484	0.019	P
	Atlas 58.CEL	4.9203725	0.334	A
	Atlas 59.CEL	2.7570682	0.601	A
TobEA closed bud	Atlas 173.CEL	6.5108395	2e-4	P
	Atlas 163.CEL	7.0382037	2e-4	P
	Atlas 195.CEL	7.2636833	2e-4	P
	Atlas 199.CEL	7.5273113	2e-4	P
	Atlas 161.CEL	7.060643	7e-4	P
TobEA open bud	Atlas 171.CEL	8.490557	2e-4	P
	Atlas 159.CEL	8.237634	2e-4	P
	Atlas 244.CEL	8.294552	2e-4	P
	Atlas 167.CEL	8.267569	2e-4	P
	Atlas 169.CEL	8.391639	2e-4	P
TobEA cotyledons	Atlas 74.CEL	6.8363085	0.019	P
	Atlas 71.CEL	3.3691962	0.601	A
	Atlas 69.CEL	5.3904767	0.068	A
	Atlas 70.CEL	4.841007	0.195	A
	Atlas 75.CEL	5.962315	0.030	P
TobEA flower	Atlas 166.CEL	8.388406	2e-4	P
	Atlas 198.CEL	8.627326	2e-4	P
	Atlas 165.CEL	8.535848	2e-4	P
	Atlas 197.CEL	8.821978	2e-4	P
	Atlas 158.CEL	8.526676	2e-4	P
TobEA lower stem	Atlas 172.CEL	7.2515726	7e-4	P
	Atlas 200.CEL	7.2020645	2e-4	P
	Atlas 164.CEL	7.3620243	2e-4	P
	Atlas 174.CEL	6.526287	2e-4	P
	Atlas 245.CEL	7.0990667	2e-4	P
TobEA upper stem	Atlas 196.CEL	6.5761867	7e-4	P
	Atlas 162.CEL	7.6437216	7e-4	P
	Atlas 160.CEL	6.45189	0.002	P
	Atlas 168.CEL	6.988211	7e-4	P
	Atlas 170.CEL	6.476688	7e-4	P
TobEA cauline leaf	Atlas 235.CEL	7.8677597	2e-4	P
	Atlas 231.CEL	8.056565	2e-4	P
	Atlas 233.CEL	8.019046	2e-4	P
	Atlas 229.CEL	7.6912265	2e-4	P
	Atlas 237.CEL	7.608413	2e-4	P
TobEA early senescent leaf	Atlas 182.CEL	7.660009	2e-4	P
	Atlas 183.CEL	8.145291	2e-4	P
	Atlas 187.CEL	8.015621	2e-4	P
	Atlas 191.CEL	8.257826	2e-4	P
	Atlas 175.CEL	7.5533576	2e-4	P
TobEA late senescent leaf	Atlas 178.CEL	8.658054	2e-4	P
	Atlas 179.CEL	8.440589	2e-4	P
	Atlas 186.CEL	8.820926	2e-4	P
	Atlas 190.CEL	8.300829	2e-4	P
	Atlas 194.CEL	8.672874	2e-4	P
TobEA mature leaf	Atlas 95.CEL	8.195108	2e-4	P
	Atlas 97.CEL	8.269798	2e-4	P
	Atlas 93.CEL	7.885672	2e-4	P
	Atlas 94.CEL	7.8607235	2e-4	P
	Atlas 96.CEL	8.091662	2e-4	P
TobEA mid/early senescent leaf	Atlas 176.CEL	7.619536	2e-4	P
	Atlas 181.CEL	8.488983	2e-4	P
	Atlas 184.CEL	7.835532	2e-4	P
	Atlas 188.CEL	8.29811	2e-4	P
	Atlas 192.CEL	8.072698	2e-4	P
TobEA mid/late senescent leaf	Atlas 177.CEL	8.031847	2e-4	P
	Atlas 180.CEL	8.109455	2e-4	P
	Atlas 185.CEL	8.504289	2e-4	P
	Atlas 189.CEL	7.967002	2e-4	P
	Atlas 193.CEL	8.56131	2e-4	P
TobEA young leaf	Atlas 53.CEL	6.015055	0.019	P
	Atlas 54.CEL	4.9663243	0.095	A
	Atlas 57.CEL	4.957829	0.130	A
	Atlas 56.CEL	5.750115	0.046	P
	Atlas 55.CEL	6.247044	0.046	P
TobEA mature root	Atlas 63.CEL	8.968523	2e-4	P
	Atlas 67.CEL	9.064097	2e-4	P
	Atlas 66.CEL	8.530445	2e-4	P
	Atlas 64.CEL	8.831539	2e-4	P
	Atlas 65.CEL	8.923982	2e-4	P
TobEA young root	Atlas 41.CEL	8.787966	2e-4	P
	Atlas 42.CEL	9.119009	2e-4	P
	Atlas 40.CEL	9.592191	2e-4	P
	Atlas 44.CEL	9.430966	2e-4	P
	Atlas 39.CEL	8.708556	2e-4	P
	Atlas 43.CEL	8.95703	2e-4	P
TobEA seed	Atlas 78.CEL	7.3907666	2e-4	P
	Atlas 79.CEL	7.187807	2e-4	P
	Atlas 99.CEL	6.9841065	2e-4	P
	Atlas 76.CEL	6.961368	2e-4	P
	Atlas 77.CEL	6.551799	0.006	P
	Atlas 98.CEL	6.9084997	2e-4	P
TobEA young shoot	Atlas 89.CEL	5.4741282	0.171	A
	Atlas 86.CEL	5.992524	0.030	P
	Atlas 87.CEL	5.388096	0.011	P
	Atlas 90.CEL	4.7926397	0.195	A
	Atlas 88.CEL	5.07574	0.024	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (16 templates correlated)

Template	Pearson	Internal Mapping
C1493_at	0.8816319	SGN-U430430
BC3M1413_at	0.8512244	No available
C8877_at	0.8279833	SGN-U424362
TT37_C20_at	0.8272062	SGN-U436492
EB441684_at	0.8227371	SGN-U447619
EB434403_s_at	0.8225366	SGN-U426221
C1494_at	0.8169384	SGN-U428603
C343_s_at	0.8163797	SGN-U438843
TT04_E07_at	0.813796	SGN-U432502
C4465_at	0.810407	SGN-U433798
C4461_at	0.8071809	SGN-U428116
C4331_at	0.8043498	SGN-U429163
C10148_at	0.8043472	SGN-U436492
TT24_L16_at	0.8042647	SGN-U428106
C7812_at	0.8040787	SGN-U433530
CV021361_s_at	0.8022577	SGN-U448487

Correlation Type:

Negative correlations (4 templates correlated)

Template	Pearson	Internal Mapping
C2982_at	-0.8546969	SGN-U424423
C8747_at	-0.8215004	SGN-U444403
C2382_x_at	-0.820082	SGN-U448148
C11631_at	-0.8111663	No available

Your Lists

Public Lists

List Contents

List Validation Report: Failed

Elements not found:

Optional: Add Missing Accessions to A List

Mismatched case

Click the Adjust Case button to align the case in the list with what is in the database.

Multiple mismatched case

Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.

List elements matching a synonym

Multiple synonym matches

Multiple synonym matches have to be resolved manually. Contact database administrators if necessary.

Fuzzy Search Results

Synonym Search Results

Create a New List from Unique Names:

Available Seedlots

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Create a New List from Selected Seedlots:

Manage Seedlots

Your Datasets

Public Datasets

Dataset Contents

Dataset Validation Failed

Elements not found:

Your Calendar

Having trouble viewing events on the calendar?
Are you associated with the breeding program you are interested in viewing?

Calendar Permissions

Add New Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

http://www.

Event Info

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

Edit Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

Login

Show Password

Forgot Username

If you've forgotten your username, enter your email address below. An email will be sent with any account username(s) associated with your email address.

Email Address

Reset Password

To reset your password, please enter your email address. A link will be sent to that address with a link that will enable you to reset your password.

Email Address

Create New User

Notice

Before creating a new account, please check if you already have an account using the directory search.
A link will be emailed to you. Please click on it to activate the account.
All fields are required.

First Name:

Last Name:

Organization:

Username:

Username must be at least 7 characters long.

Password:

Password must be at least 7 characters long and different from your username.

Confirm Password:

Password must be at least 7 characters long and different from your username.

Email Address:

An email will be sent to this address requiring you to confirm its receipt to activate your account.