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Expression Template: DW001987_at

Template Basic Information

Template name:	DW001987_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U448184
External db links:	GenBank: DW001987

Annotations for unigene SGN-U448184 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	Identity	Alignment Length	Frame
genbank	blastx	gi\|75146039\|sp\|Q7Y1B6\|GAI_LYCES	860	78.94	1677 bp (64.4%)	3
Description:	DELLA
arabidopsis	blastx	At2G01570.1	640	59.62	1593 bp (61.2%)	3
Description:	Symbols: RGA, RGA1 \| RGA1 (REPRESSOR OF GA1-3 1); transcription factor \| chr2:255580-257343 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
DW001987_at_probe_01	PM	data not available	data not available	1
DW001987_at_probe_02	PM	data not available	data not available	1
DW001987_at_probe_03	PM	data not available	data not available	1
DW001987_at_probe_04	PM	data not available	data not available	1
DW001987_at_probe_05	PM	data not available	data not available	1
DW001987_at_probe_06	PM	data not available	data not available	1
DW001987_at_probe_07	PM	data not available	data not available	1
DW001987_at_probe_08	PM	data not available	data not available	1
DW001987_at_probe_09	PM	data not available	data not available	1
DW001987_at_probe_10	PM	data not available	data not available	1
DW001987_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	8.76	8.73	0.15	0.02
	TobEA vegetative shoot apex	shoot apex	8	8	9.64	9.63	0.17	0.02
	TobEA closed bud	flower bud	5	5	8.78	8.71	0.22	0.03
	TobEA open bud	flower bud	5	5	8.61	8.64	0.21	0.02
	TobEA cotyledons	cotyledon	5	5	7.93	8.01	0.86	0.11
	TobEA flower	flower	5	5	6.78	6.74	0.34	0.05
	TobEA lower stem	stem internode	5	5	9.20	9.24	0.22	0.02
	TobEA upper stem	stem internode	5	5	9.08	9.12	0.47	0.05
	TobEA cauline leaf	cauline leaf	5	5	7.94	7.98	0.18	0.02
	TobEA early senescent leaf	adult vascular leaf	5	5	7.53	7.66	0.42	0.06
	TobEA late senescent leaf	adult vascular leaf	5	5	7.09	6.93	0.28	0.04
	TobEA mature leaf	adult vascular leaf	5	5	7.66	7.69	0.14	0.02
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	7.52	7.57	0.27	0.04
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	7.53	7.66	0.39	0.05
	TobEA young leaf	juvenile vascular leaf	5	5	9.06	9.07	0.12	0.01
	TobEA mature root	root	5	5	7.19	7.19	0.32	0.04
	TobEA young root	root	6	6	7.77	7.71	0.27	0.04
	TobEA seed	seed	6	6	9.21	9.18	0.13	0.01
	TobEA young shoot	shoot system	5	5	8.66	8.62	0.25	0.03

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 145.CEL	8.875278	0.001	P
	Atlas 143.CEL	8.729006	7e-4	P
	Atlas 146.CEL	8.555111	0.002	P
	Atlas 147.CEL	8.694514	0.006	P
	Atlas 144.CEL	8.947548	0.003	P
TobEA vegetative shoot apex	Atlas 250.CEL	9.471753	2e-4	P
	Atlas 59.CEL	9.923921	7e-4	P
	Atlas 61.CEL	9.778399	0.002	P
	Atlas 247.CEL	9.595101	2e-4	P
	Atlas 248.CEL	9.658347	2e-4	P
	Atlas 58.CEL	9.742545	2e-4	P
	Atlas 246.CEL	9.475137	0.001	P
	Atlas 249.CEL	9.486559	0.002	P
TobEA closed bud	Atlas 163.CEL	8.723362	0.002	P
	Atlas 173.CEL	8.633996	0.002	P
	Atlas 161.CEL	8.706588	7e-4	P
	Atlas 195.CEL	8.674121	0.002	P
	Atlas 199.CEL	9.169532	2e-4	P
TobEA open bud	Atlas 159.CEL	8.638668	0.001	P
	Atlas 167.CEL	8.9125	0.002	P
	Atlas 169.CEL	8.684104	0.002	P
	Atlas 171.CEL	8.40228	0.002	P
	Atlas 244.CEL	8.41244	0.004	P
TobEA cotyledons	Atlas 69.CEL	8.012153	7e-4	P
	Atlas 75.CEL	8.926334	0.002	P
	Atlas 71.CEL	7.079773	0.038	P
	Atlas 70.CEL	7.029511	0.003	P
	Atlas 74.CEL	8.596153	0.001	P
TobEA flower	Atlas 165.CEL	6.427317	0.002	P
	Atlas 166.CEL	6.7448883	7e-4	P
	Atlas 198.CEL	6.5693836	0.002	P
	Atlas 197.CEL	7.3062406	2e-4	P
	Atlas 158.CEL	6.876111	7e-4	P
TobEA lower stem	Atlas 172.CEL	8.86147	0.003	P
	Atlas 245.CEL	9.166296	0.002	P
	Atlas 200.CEL	9.296333	0.002	P
	Atlas 164.CEL	9.244165	7e-4	P
	Atlas 174.CEL	9.451773	0.004	P
TobEA upper stem	Atlas 160.CEL	9.506232	0.001	P
	Atlas 170.CEL	9.118581	7e-4	P
	Atlas 162.CEL	8.389351	0.003	P
	Atlas 168.CEL	8.902724	0.003	P
	Atlas 196.CEL	9.498885	7e-4	P
TobEA cauline leaf	Atlas 233.CEL	7.7876434	0.002	P
	Atlas 229.CEL	8.165187	0.002	P
	Atlas 235.CEL	7.717145	2e-4	P
	Atlas 237.CEL	7.979053	2e-4	P
	Atlas 231.CEL	8.02857	0.002	P
TobEA early senescent leaf	Atlas 182.CEL	7.906061	0.006	P
	Atlas 183.CEL	7.474175	2e-4	P
	Atlas 187.CEL	7.781128	0.001	P
	Atlas 175.CEL	7.662952	0.001	P
	Atlas 191.CEL	6.836254	0.004	P
TobEA late senescent leaf	Atlas 186.CEL	6.806594	0.024	P
	Atlas 190.CEL	7.412726	0.024	P
	Atlas 194.CEL	7.356284	2e-4	P
	Atlas 178.CEL	6.929898	0.004	P
	Atlas 179.CEL	6.9333615	0.068	A
TobEA mature leaf	Atlas 94.CEL	7.712033	0.002	P
	Atlas 95.CEL	7.6859307	0.006	P
	Atlas 93.CEL	7.830754	7e-4	P
	Atlas 96.CEL	7.6337986	0.001	P
	Atlas 97.CEL	7.437333	0.002	P
TobEA mid/early senescent leaf	Atlas 188.CEL	7.69069	0.001	P
	Atlas 176.CEL	7.1779523	0.002	P
	Atlas 184.CEL	7.832402	2e-4	P
	Atlas 181.CEL	7.5722384	0.008	P
	Atlas 192.CEL	7.30678	2e-4	P
TobEA mid/late senescent leaf	Atlas 177.CEL	7.0392966	2e-4	P
	Atlas 189.CEL	7.6603317	0.003	P
	Atlas 193.CEL	7.230976	0.002	P
	Atlas 180.CEL	7.998648	0.003	P
	Atlas 185.CEL	7.7289925	0.003	P
TobEA young leaf	Atlas 55.CEL	8.971588	0.003	P
	Atlas 57.CEL	9.067611	2e-4	P
	Atlas 53.CEL	8.918095	0.001	P
	Atlas 56.CEL	9.168775	0.001	P
	Atlas 54.CEL	9.19162	7e-4	P
TobEA mature root	Atlas 63.CEL	7.575002	0.011	P
	Atlas 65.CEL	6.742495	0.011	P
	Atlas 67.CEL	7.19415	0.003	P
	Atlas 66.CEL	7.039154	0.001	P
	Atlas 64.CEL	7.376613	0.002	P
TobEA young root	Atlas 39.CEL	7.783008	2e-4	P
	Atlas 42.CEL	7.959392	0.001	P
	Atlas 43.CEL	7.590173	7e-4	P
	Atlas 44.CEL	7.444448	0.003	P
	Atlas 40.CEL	7.641215	0.001	P
	Atlas 41.CEL	8.197072	0.002	P
TobEA seed	Atlas 76.CEL	9.034294	2e-4	P
	Atlas 79.CEL	9.411219	0.006	P
	Atlas 98.CEL	9.193173	7e-4	P
	Atlas 77.CEL	9.16178	2e-4	P
	Atlas 99.CEL	9.270969	7e-4	P
	Atlas 78.CEL	9.17028	0.001	P
TobEA young shoot	Atlas 86.CEL	8.624306	0.002	P
	Atlas 87.CEL	8.364428	0.006	P
	Atlas 89.CEL	8.920604	0.006	P
	Atlas 90.CEL	8.921474	0.002	P
	Atlas 88.CEL	8.4928255	0.003	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (4 templates correlated)

Template	Pearson	Internal Mapping
TT03_O20_at	0.8237619	SGN-U465186
EB433942_at	0.8110485	No available
C5526_at	0.8110032	SGN-U448184
C7651_at	0.8051517	SGN-U449772

Correlation Type:

Negative correlations (24 templates correlated)

Template	Pearson	Internal Mapping
EB428243_at	-0.8610906	SGN-U447390
C5230_at	-0.8448286	SGN-U450832
C9149_at	-0.8433911	SGN-U448203
C1431_at	-0.8352035	SGN-U425340
C10103_s_at	-0.8347695	SGN-U448277
EB431961_at	-0.83365	SGN-U431472
DW000812_at	-0.8307455	SGN-U448630
C10543_at	-0.8279171	No available
TT11_J06_at	-0.8271424	SGN-U445682
C10491_s_at	-0.826502	No available
TT05_B21_s_at	-0.8224889	SGN-U425969
U65390_at	-0.8204143	SGN-U467604
EB443629_x_at	-0.8195646	SGN-U461143
EB435316_at	-0.818874	SGN-U442953
TT17_H13_at	-0.817245	SGN-U437751
AJ718098_s_at	-0.8158738	SGN-U450830
C5347_s_at	-0.8156341	SGN-U447575
C6365_at	-0.8135415	SGN-U442198
C5959_s_at	-0.8122117	SGN-U441444
TT12_O16_at	-0.8117388	SGN-U421641
C10315_s_at	-0.810986	SGN-U434021
C159_at	-0.8092062	SGN-U426296
C4655_at	-0.8045309	SGN-U448848
EB428803_at	-0.8039595	SGN-U449758

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