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Expression Template: DW001811_at

Template Basic Information

Template name:	DW001811_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U460236
External db links:	GenBank: DW001811

Annotations for unigene SGN-U460236 (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|118488424\|gb\|ABK96027.1\|	77	1e-12	43.88	321 bp (42.2%)	3
Description:	unknown
arabidopsis	blastx	No significant hits (or none blast was used over this dataset)
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
DW001811_at_probe_01	PM	data not available	data not available	1
DW001811_at_probe_02	PM	data not available	data not available	1
DW001811_at_probe_03	PM	data not available	data not available	1
DW001811_at_probe_04	PM	data not available	data not available	1
DW001811_at_probe_05	PM	data not available	data not available	1
DW001811_at_probe_06	PM	data not available	data not available	1
DW001811_at_probe_07	PM	data not available	data not available	1
DW001811_at_probe_08	PM	data not available	data not available	1
DW001811_at_probe_09	PM	data not available	data not available	1
DW001811_at_probe_10	PM	data not available	data not available	1
DW001811_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	9.71	9.68	0.14	0.01
	TobEA vegetative shoot apex	shoot apex	8	8	9.34	9.34	0.23	0.02
	TobEA closed bud	flower bud	5	5	9.11	9.08	0.26	0.03
	TobEA open bud	flower bud	5	5	8.73	8.62	0.49	0.06
	TobEA cotyledons	cotyledon	5	5	8.42	8.51	0.35	0.04
	TobEA flower	flower	5	5	8.48	8.31	0.35	0.04
	TobEA lower stem	stem internode	5	5	8.88	8.96	0.31	0.03
	TobEA upper stem	stem internode	5	5	8.66	8.59	0.40	0.05
	TobEA cauline leaf	cauline leaf	5	5	7.97	8.10	0.21	0.03
	TobEA early senescent leaf	adult vascular leaf	5	5	8.72	8.93	0.77	0.09
	TobEA late senescent leaf	adult vascular leaf	5	5	9.00	9.15	0.65	0.07
	TobEA mature leaf	adult vascular leaf	5	5	8.71	8.69	0.12	0.01
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	8.57	8.48	0.53	0.06
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	8.37	8.07	0.62	0.07
	TobEA young leaf	juvenile vascular leaf	5	5	9.17	9.17	0.19	0.02
	TobEA mature root	root	5	5	8.96	8.94	0.16	0.02
	TobEA young root	root	6	6	8.93	9.04	0.33	0.04
	TobEA seed	seed	6	6	10.01	10.04	0.17	0.02
	TobEA young shoot	shoot system	5	5	8.57	8.58	0.20	0.02

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 144.CEL	9.887534	2e-4	P
	Atlas 145.CEL	9.547107	7e-4	P
	Atlas 146.CEL	9.617645	2e-4	P
	Atlas 143.CEL	9.676412	2e-4	P
	Atlas 147.CEL	9.813454	2e-4	P
TobEA vegetative shoot apex	Atlas 58.CEL	9.273169	2e-4	P
	Atlas 61.CEL	9.178802	2e-4	P
	Atlas 246.CEL	9.584111	2e-4	P
	Atlas 247.CEL	9.41161	2e-4	P
	Atlas 250.CEL	9.624283	2e-4	P
	Atlas 59.CEL	8.967282	2e-4	P
	Atlas 248.CEL	9.192285	2e-4	P
	Atlas 249.CEL	9.512959	2e-4	P
TobEA closed bud	Atlas 195.CEL	9.45371	2e-4	P
	Atlas 199.CEL	9.253944	2e-4	P
	Atlas 163.CEL	9.082453	2e-4	P
	Atlas 161.CEL	8.754364	2e-4	P
	Atlas 173.CEL	8.995199	2e-4	P
TobEA open bud	Atlas 159.CEL	8.478346	2e-4	P
	Atlas 167.CEL	9.011155	2e-4	P
	Atlas 171.CEL	9.408626	2e-4	P
	Atlas 169.CEL	8.620266	2e-4	P
	Atlas 244.CEL	8.147369	2e-4	P
TobEA cotyledons	Atlas 71.CEL	8.625921	7e-4	P
	Atlas 70.CEL	8.512758	7e-4	P
	Atlas 74.CEL	7.9216924	2e-4	P
	Atlas 69.CEL	8.798991	7e-4	P
	Atlas 75.CEL	8.236395	2e-4	P
TobEA flower	Atlas 158.CEL	8.129636	2e-4	P
	Atlas 166.CEL	8.312232	7e-4	P
	Atlas 197.CEL	8.8152895	2e-4	P
	Atlas 198.CEL	8.904026	2e-4	P
	Atlas 165.CEL	8.24405	2e-4	P
TobEA lower stem	Atlas 164.CEL	8.435539	2e-4	P
	Atlas 172.CEL	8.687656	7e-4	P
	Atlas 174.CEL	8.962413	2e-4	P
	Atlas 200.CEL	9.147695	2e-4	P
	Atlas 245.CEL	9.14625	2e-4	P
TobEA upper stem	Atlas 162.CEL	8.176879	2e-4	P
	Atlas 170.CEL	8.731699	2e-4	P
	Atlas 160.CEL	8.531507	2e-4	P
	Atlas 168.CEL	8.585375	2e-4	P
	Atlas 196.CEL	9.269347	2e-4	P
TobEA cauline leaf	Atlas 235.CEL	7.8439045	7e-4	P
	Atlas 229.CEL	8.126961	2e-4	P
	Atlas 237.CEL	7.667271	2e-4	P
	Atlas 231.CEL	8.0983305	2e-4	P
	Atlas 233.CEL	8.1301155	2e-4	P
TobEA early senescent leaf	Atlas 175.CEL	7.624687	7e-4	P
	Atlas 183.CEL	8.934763	2e-4	P
	Atlas 187.CEL	9.350574	2e-4	P
	Atlas 191.CEL	9.449332	2e-4	P
	Atlas 182.CEL	8.258724	2e-4	P
TobEA late senescent leaf	Atlas 179.CEL	9.444265	2e-4	P
	Atlas 178.CEL	8.216952	2e-4	P
	Atlas 186.CEL	8.458755	2e-4	P
	Atlas 190.CEL	9.735111	7e-4	P
	Atlas 194.CEL	9.147776	2e-4	P
TobEA mature leaf	Atlas 97.CEL	8.693727	2e-4	P
	Atlas 94.CEL	8.658745	2e-4	P
	Atlas 95.CEL	8.56604	2e-4	P
	Atlas 93.CEL	8.87706	2e-4	P
	Atlas 96.CEL	8.7664995	2e-4	P
TobEA mid/early senescent leaf	Atlas 176.CEL	8.222955	2e-4	P
	Atlas 181.CEL	8.477194	2e-4	P
	Atlas 184.CEL	7.9521656	2e-4	P
	Atlas 188.CEL	9.274043	2e-4	P
	Atlas 192.CEL	8.900482	2e-4	P
TobEA mid/late senescent leaf	Atlas 189.CEL	9.194053	2e-4	P
	Atlas 193.CEL	8.066074	7e-4	P
	Atlas 177.CEL	7.8834033	7e-4	P
	Atlas 180.CEL	7.833843	7e-4	P
	Atlas 185.CEL	8.862837	0.006	P
TobEA young leaf	Atlas 53.CEL	9.220707	2e-4	P
	Atlas 54.CEL	8.925316	2e-4	P
	Atlas 57.CEL	9.45393	2e-4	P
	Atlas 55.CEL	9.172618	2e-4	P
	Atlas 56.CEL	9.098085	2e-4	P
TobEA mature root	Atlas 65.CEL	8.937497	2e-4	P
	Atlas 66.CEL	8.846969	2e-4	P
	Atlas 63.CEL	9.212104	2e-4	P
	Atlas 67.CEL	8.977071	2e-4	P
	Atlas 64.CEL	8.811356	7e-4	P
TobEA young root	Atlas 43.CEL	8.528826	2e-4	P
	Atlas 39.CEL	9.234407	2e-4	P
	Atlas 41.CEL	9.2403145	2e-4	P
	Atlas 40.CEL	8.522058	2e-4	P
	Atlas 42.CEL	9.124907	2e-4	P
	Atlas 44.CEL	8.955003	2e-4	P
TobEA seed	Atlas 77.CEL	9.987024	2e-4	P
	Atlas 78.CEL	10.083145	2e-4	P
	Atlas 79.CEL	10.233975	2e-4	P
	Atlas 98.CEL	10.124516	2e-4	P
	Atlas 99.CEL	9.911271	2e-4	P
	Atlas 76.CEL	9.741313	2e-4	P
TobEA young shoot	Atlas 86.CEL	8.541817	2e-4	P
	Atlas 90.CEL	8.706128	2e-4	P
	Atlas 89.CEL	8.576734	2e-4	P
	Atlas 87.CEL	8.759917	2e-4	P
	Atlas 88.CEL	8.250511	7e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (19 templates correlated)

Template	Pearson	Internal Mapping
BP532537_at	0.8781483	SGN-U461396
EB433013_at	0.8683119	SGN-U487370
TT04_O04_at	0.8614782	SGN-U459712
AJ717999_s_at	0.8590117	SGN-U444480
C8052_x_at	0.8540294	SGN-U448429
DV158099_at	0.842689	SGN-U449445
EB451374_at	0.8291376	SGN-U425157
EB444888_at	0.8257797	SGN-U457905
C667_at	0.8255475	SGN-U439970
BP531648_at	0.821132	SGN-U431508
C1090_at	0.8187556	SGN-U444817
TT05_J09_at	0.81525	SGN-U435302
DV160325_at	0.8150377	SGN-U458459
EB431055_x_at	0.810745	SGN-U449273
TT16_K03_at	0.8099533	SGN-U494085
EB432113_at	0.8084572	SGN-U447811
DV159907_at	0.8073967	SGN-U461378
EB445607_at	0.8034961	SGN-U438495
EB434811_at	0.80116	SGN-U451613

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