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Expression Template: DW001247_at

Template Basic Information

Template name:	DW001247_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U460374
External db links:	GenBank: DW001247

Annotations for unigene SGN-U460374 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157340766\|emb\|CAO47571.1\|	194	1e-47	55.56	495 bp (54.3%)	1
Description:	unnamed
arabidopsis	blastx	At2G44510.1	152	3e-37	47.59	495 bp (54.3%)	1
Description:	p21Cip1-binding protein-related \| chr2:18384487-18386106 FORWARD
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
DW001247_at_probe_01	PM	data not available	data not available	1
DW001247_at_probe_02	PM	data not available	data not available	1
DW001247_at_probe_03	PM	data not available	data not available	1
DW001247_at_probe_04	PM	data not available	data not available	1
DW001247_at_probe_05	PM	data not available	data not available	1
DW001247_at_probe_06	PM	data not available	data not available	1
DW001247_at_probe_07	PM	data not available	data not available	1
DW001247_at_probe_08	PM	data not available	data not available	1
DW001247_at_probe_09	PM	data not available	data not available	1
DW001247_at_probe_10	PM	data not available	data not available	1
DW001247_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	9.34	9.33	0.07	0.01
	TobEA vegetative shoot apex	shoot apex	8	8	8.58	8.62	0.31	0.04
	TobEA closed bud	flower bud	5	5	8.97	8.97	0.07	0.01
	TobEA open bud	flower bud	5	5	9.10	9.20	0.24	0.03
	TobEA cotyledons	cotyledon	5	5	8.47	8.42	0.24	0.03
	TobEA flower	flower	5	5	8.78	8.82	0.19	0.02
	TobEA lower stem	stem internode	5	5	8.74	8.77	0.18	0.02
	TobEA upper stem	stem internode	5	5	8.74	8.77	0.26	0.03
	TobEA cauline leaf	cauline leaf	5	5	8.58	8.55	0.13	0.02
	TobEA early senescent leaf	adult vascular leaf	5	5	8.86	8.92	0.33	0.04
	TobEA late senescent leaf	adult vascular leaf	5	5	9.08	9.11	0.19	0.02
	TobEA mature leaf	adult vascular leaf	5	5	8.88	8.90	0.12	0.01
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	8.78	8.73	0.27	0.03
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	8.97	8.89	0.20	0.02
	TobEA young leaf	juvenile vascular leaf	5	5	8.70	8.84	0.43	0.05
	TobEA mature root	root	5	5	9.00	9.01	0.09	0.01
	TobEA young root	root	6	6	8.40	8.41	0.08	0.01
	TobEA seed	seed	6	6	9.75	9.69	0.26	0.03
	TobEA young shoot	shoot system	5	5	8.30	8.35	0.18	0.02

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 143.CEL	9.2631035	2e-4	P
	Atlas 145.CEL	9.318681	2e-4	P
	Atlas 144.CEL	9.330385	2e-4	P
	Atlas 147.CEL	9.463391	2e-4	P
	Atlas 146.CEL	9.3296175	2e-4	P
TobEA vegetative shoot apex	Atlas 250.CEL	8.632435	2e-4	P
	Atlas 58.CEL	8.5107355	2e-4	P
	Atlas 59.CEL	8.1355505	2e-4	P
	Atlas 246.CEL	9.010088	2e-4	P
	Atlas 249.CEL	8.809688	2e-4	P
	Atlas 247.CEL	8.754884	2e-4	P
	Atlas 248.CEL	8.144595	2e-4	P
	Atlas 61.CEL	8.60752	2e-4	P
TobEA closed bud	Atlas 173.CEL	9.067166	2e-4	P
	Atlas 195.CEL	8.965261	2e-4	P
	Atlas 161.CEL	8.898691	2e-4	P
	Atlas 163.CEL	8.905129	2e-4	P
	Atlas 199.CEL	9.02197	2e-4	P
TobEA open bud	Atlas 169.CEL	9.276536	2e-4	P
	Atlas 244.CEL	8.694877	2e-4	P
	Atlas 159.CEL	9.094555	2e-4	P
	Atlas 167.CEL	9.204074	2e-4	P
	Atlas 171.CEL	9.246354	2e-4	P
TobEA cotyledons	Atlas 75.CEL	8.424547	2e-4	P
	Atlas 69.CEL	8.76072	7e-4	P
	Atlas 71.CEL	8.671666	2e-4	P
	Atlas 70.CEL	8.276998	2e-4	P
	Atlas 74.CEL	8.198205	2e-4	P
TobEA flower	Atlas 158.CEL	8.824083	2e-4	P
	Atlas 165.CEL	8.698711	2e-4	P
	Atlas 198.CEL	9.042561	2e-4	P
	Atlas 166.CEL	8.524697	2e-4	P
	Atlas 197.CEL	8.818943	2e-4	P
TobEA lower stem	Atlas 164.CEL	8.823106	2e-4	P
	Atlas 174.CEL	8.766964	2e-4	P
	Atlas 200.CEL	8.593665	2e-4	P
	Atlas 245.CEL	8.978691	2e-4	P
	Atlas 172.CEL	8.545387	2e-4	P
TobEA upper stem	Atlas 160.CEL	8.863473	2e-4	P
	Atlas 168.CEL	8.773168	2e-4	P
	Atlas 162.CEL	8.4938135	7e-4	P
	Atlas 170.CEL	8.473858	2e-4	P
	Atlas 196.CEL	9.10487	2e-4	P
TobEA cauline leaf	Atlas 237.CEL	8.559989	2e-4	P
	Atlas 229.CEL	8.553716	2e-4	P
	Atlas 231.CEL	8.494302	2e-4	P
	Atlas 235.CEL	8.48606	2e-4	P
	Atlas 233.CEL	8.803494	2e-4	P
TobEA early senescent leaf	Atlas 183.CEL	8.930446	2e-4	P
	Atlas 187.CEL	9.331029	2e-4	P
	Atlas 175.CEL	8.454308	2e-4	P
	Atlas 182.CEL	8.657661	2e-4	P
	Atlas 191.CEL	8.919261	2e-4	P
TobEA late senescent leaf	Atlas 179.CEL	8.9267845	2e-4	P
	Atlas 194.CEL	9.198971	2e-4	P
	Atlas 178.CEL	9.113145	2e-4	P
	Atlas 186.CEL	8.863631	2e-4	P
	Atlas 190.CEL	9.313518	7e-4	P
TobEA mature leaf	Atlas 96.CEL	9.021885	2e-4	P
	Atlas 97.CEL	8.809009	2e-4	P
	Atlas 93.CEL	8.713537	2e-4	P
	Atlas 94.CEL	8.93814	2e-4	P
	Atlas 95.CEL	8.903685	2e-4	P
TobEA mid/early senescent leaf	Atlas 184.CEL	8.677515	2e-4	P
	Atlas 188.CEL	8.923062	2e-4	P
	Atlas 176.CEL	8.414084	7e-4	P
	Atlas 181.CEL	9.137781	2e-4	P
	Atlas 192.CEL	8.728254	2e-4	P
TobEA mid/late senescent leaf	Atlas 180.CEL	9.047733	2e-4	P
	Atlas 189.CEL	9.269647	2e-4	P
	Atlas 185.CEL	8.841482	2e-4	P
	Atlas 177.CEL	8.773213	2e-4	P
	Atlas 193.CEL	8.893355	2e-4	P
TobEA young leaf	Atlas 53.CEL	8.9264145	2e-4	P
	Atlas 57.CEL	8.976177	2e-4	P
	Atlas 55.CEL	8.844978	2e-4	P
	Atlas 54.CEL	7.935351	2e-4	P
	Atlas 56.CEL	8.816891	2e-4	P
TobEA mature root	Atlas 65.CEL	9.011118	2e-4	P
	Atlas 63.CEL	8.981666	2e-4	P
	Atlas 64.CEL	9.119681	2e-4	P
	Atlas 67.CEL	8.865274	2e-4	P
	Atlas 66.CEL	9.022785	2e-4	P
TobEA young root	Atlas 44.CEL	8.412151	2e-4	P
	Atlas 40.CEL	8.366145	2e-4	P
	Atlas 41.CEL	8.478981	2e-4	P
	Atlas 43.CEL	8.261041	2e-4	P
	Atlas 39.CEL	8.404814	2e-4	P
	Atlas 42.CEL	8.471449	2e-4	P
TobEA seed	Atlas 78.CEL	10.111403	2e-4	P
	Atlas 79.CEL	9.664903	2e-4	P
	Atlas 99.CEL	9.469229	2e-4	P
	Atlas 98.CEL	9.706175	2e-4	P
	Atlas 76.CEL	10.017489	2e-4	P
	Atlas 77.CEL	9.5314	2e-4	P
TobEA young shoot	Atlas 88.CEL	8.353318	2e-4	P
	Atlas 90.CEL	8.039459	2e-4	P
	Atlas 86.CEL	8.42748	2e-4	P
	Atlas 87.CEL	8.465079	2e-4	P
	Atlas 89.CEL	8.1979475	2e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (19 templates correlated)

Template	Pearson	Internal Mapping
EB440805_at	0.8769653	SGN-U441602
EB441061_at	0.8478313	SGN-U440580
EB428457_at	0.8399275	SGN-U431183
TT06_L23_s_at	0.8339324	SGN-U438148
DV161596_at	0.8304924	SGN-U504842
EB442396_at	0.8217465	SGN-U444628
TT41_L21_s_at	0.8208345	SGN-U447966
C4814_at	0.8192619	SGN-U438493
TT30_M11_at	0.8168428	SGN-U483157
EB442966_at	0.8146129	SGN-U439193
EB441122_s_at	0.8141133	SGN-U424056
EB682399_at	0.8137364	SGN-U435908
EB441322_at	0.8072893	SGN-U493257
EB677461_at	0.8072437	SGN-U428233
BP132558_at	0.8048681	SGN-U441602
C5046_at	0.8041528	SGN-U443302
BP532347_s_at	0.8022141	SGN-U425659
BP527277_at	0.801586	SGN-U446641
BP531588_at	0.801098	SGN-U435140

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