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Expression Template: DV998869_at

Template Basic Information

Template name:	DV998869_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U423948
External db links:	GenBank: DV998869

Annotations for unigene SGN-U423948 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157350362\|emb\|CAO40342.1\|	213	2e-53	50.57	723 bp (75.9%)	3
Description:	unnamed
arabidopsis	blastx	At5G46170.1	212	3e-55	51.16	717 bp (75.3%)	3
Description:	F-box family protein \| chr5:18732865-18734052 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
DV998869_at_probe_01	PM	data not available	data not available	1
DV998869_at_probe_02	PM	data not available	data not available	1
DV998869_at_probe_03	PM	data not available	data not available	1
DV998869_at_probe_04	PM	data not available	data not available	1
DV998869_at_probe_05	PM	data not available	data not available	1
DV998869_at_probe_06	PM	data not available	data not available	1
DV998869_at_probe_07	PM	data not available	data not available	1
DV998869_at_probe_08	PM	data not available	data not available	1
DV998869_at_probe_09	PM	data not available	data not available	1
DV998869_at_probe_10	PM	data not available	data not available	1
DV998869_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	8.98	8.89	0.20	0.02
	TobEA vegetative shoot apex	shoot apex	8	8	8.28	8.43	0.49	0.06
	TobEA closed bud	flower bud	5	5	9.28	9.27	0.07	0.01
	TobEA open bud	flower bud	5	5	9.58	9.59	0.08	0.01
	TobEA cotyledons	cotyledon	5	5	9.36	9.30	0.22	0.02
	TobEA flower	flower	5	5	9.89	10.00	0.25	0.02
	TobEA lower stem	stem internode	5	5	9.28	9.25	0.18	0.02
	TobEA upper stem	stem internode	5	5	9.70	9.68	0.17	0.02
	TobEA cauline leaf	cauline leaf	5	5	9.23	9.27	0.30	0.03
	TobEA early senescent leaf	adult vascular leaf	5	5	9.19	9.27	0.27	0.03
	TobEA late senescent leaf	adult vascular leaf	5	5	9.26	9.28	0.29	0.03
	TobEA mature leaf	adult vascular leaf	5	5	9.23	9.29	0.24	0.03
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	9.37	9.33	0.10	0.01
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	9.35	9.48	0.37	0.04
	TobEA young leaf	juvenile vascular leaf	5	5	8.18	8.41	0.83	0.10
	TobEA mature root	root	5	5	8.82	8.75	0.16	0.02
	TobEA young root	root	6	6	8.27	8.27	0.20	0.02
	TobEA seed	seed	6	6	7.92	7.86	0.30	0.04
	TobEA young shoot	shoot system	5	5	8.72	8.76	0.31	0.04

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 145.CEL	9.170161	2e-4	P
	Atlas 144.CEL	8.809111	2e-4	P
	Atlas 147.CEL	9.21837	2e-4	P
	Atlas 143.CEL	8.788205	7e-4	P
	Atlas 146.CEL	8.893597	2e-4	P
TobEA vegetative shoot apex	Atlas 246.CEL	8.636306	2e-4	P
	Atlas 248.CEL	7.731064	7e-4	P
	Atlas 249.CEL	8.874775	7e-4	P
	Atlas 59.CEL	7.441269	7e-4	P
	Atlas 58.CEL	8.069178	0.003	P
	Atlas 247.CEL	8.542458	2e-4	P
	Atlas 250.CEL	8.616244	2e-4	P
	Atlas 61.CEL	8.3116865	2e-4	P
TobEA closed bud	Atlas 163.CEL	9.38534	2e-4	P
	Atlas 195.CEL	9.214789	7e-4	P
	Atlas 161.CEL	9.230451	7e-4	P
	Atlas 173.CEL	9.269155	2e-4	P
	Atlas 199.CEL	9.280798	7e-4	P
TobEA open bud	Atlas 159.CEL	9.5544195	2e-4	P
	Atlas 167.CEL	9.624007	2e-4	P
	Atlas 171.CEL	9.675992	7e-4	P
	Atlas 244.CEL	9.455975	2e-4	P
	Atlas 169.CEL	9.594443	7e-4	P
TobEA cotyledons	Atlas 69.CEL	9.29539	2e-4	P
	Atlas 70.CEL	9.69342	2e-4	P
	Atlas 75.CEL	9.439691	2e-4	P
	Atlas 74.CEL	9.233988	2e-4	P
	Atlas 71.CEL	9.137747	2e-4	P
TobEA flower	Atlas 158.CEL	10.000835	2e-4	P
	Atlas 165.CEL	9.521706	2e-4	P
	Atlas 166.CEL	9.758955	2e-4	P
	Atlas 197.CEL	10.07444	2e-4	P
	Atlas 198.CEL	10.094993	2e-4	P
TobEA lower stem	Atlas 245.CEL	9.046713	2e-4	P
	Atlas 172.CEL	9.251507	7e-4	P
	Atlas 200.CEL	9.449393	2e-4	P
	Atlas 164.CEL	9.465452	2e-4	P
	Atlas 174.CEL	9.162321	2e-4	P
TobEA upper stem	Atlas 196.CEL	9.676632	2e-4	P
	Atlas 170.CEL	9.734687	2e-4	P
	Atlas 162.CEL	9.618439	2e-4	P
	Atlas 160.CEL	9.962934	2e-4	P
	Atlas 168.CEL	9.511934	2e-4	P
TobEA cauline leaf	Atlas 229.CEL	8.989721	2e-4	P
	Atlas 231.CEL	9.4658	2e-4	P
	Atlas 237.CEL	8.865779	2e-4	P
	Atlas 233.CEL	9.265277	2e-4	P
	Atlas 235.CEL	9.558982	2e-4	P
TobEA early senescent leaf	Atlas 183.CEL	9.269684	2e-4	P
	Atlas 187.CEL	9.533085	7e-4	P
	Atlas 175.CEL	8.844059	2e-4	P
	Atlas 182.CEL	9.302647	2e-4	P
	Atlas 191.CEL	8.9815035	2e-4	P
TobEA late senescent leaf	Atlas 190.CEL	8.777377	2e-4	P
	Atlas 178.CEL	9.262154	2e-4	P
	Atlas 179.CEL	9.282176	2e-4	P
	Atlas 186.CEL	9.573406	2e-4	P
	Atlas 194.CEL	9.385827	2e-4	P
TobEA mature leaf	Atlas 96.CEL	9.347283	7e-4	P
	Atlas 97.CEL	9.515261	7e-4	P
	Atlas 94.CEL	9.073238	7e-4	P
	Atlas 93.CEL	8.897036	7e-4	P
	Atlas 95.CEL	9.292356	7e-4	P
TobEA mid/early senescent leaf	Atlas 181.CEL	9.325768	2e-4	P
	Atlas 192.CEL	9.549209	2e-4	P
	Atlas 176.CEL	9.323319	7e-4	P
	Atlas 184.CEL	9.341297	2e-4	P
	Atlas 188.CEL	9.307739	7e-4	P
TobEA mid/late senescent leaf	Atlas 177.CEL	9.483663	7e-4	P
	Atlas 185.CEL	9.577127	7e-4	P
	Atlas 189.CEL	8.989954	2e-4	P
	Atlas 180.CEL	8.940116	2e-4	P
	Atlas 193.CEL	9.769746	2e-4	P
TobEA young leaf	Atlas 53.CEL	8.411936	7e-4	P
	Atlas 54.CEL	6.7617807	0.005	P
	Atlas 55.CEL	8.256115	2e-4	P
	Atlas 57.CEL	8.845581	7e-4	P
	Atlas 56.CEL	8.643729	2e-4	P
TobEA mature root	Atlas 64.CEL	8.679932	2e-4	P
	Atlas 65.CEL	8.691148	2e-4	P
	Atlas 63.CEL	9.048565	2e-4	P
	Atlas 67.CEL	8.910649	2e-4	P
	Atlas 66.CEL	8.754208	2e-4	P
TobEA young root	Atlas 39.CEL	8.098051	7e-4	P
	Atlas 42.CEL	8.469143	7e-4	P
	Atlas 40.CEL	8.434165	2e-4	P
	Atlas 43.CEL	8.051875	7e-4	P
	Atlas 41.CEL	8.104638	2e-4	P
	Atlas 44.CEL	8.449573	7e-4	P
TobEA seed	Atlas 76.CEL	8.158761	2e-4	P
	Atlas 79.CEL	7.921755	0.002	P
	Atlas 78.CEL	8.364521	2e-4	P
	Atlas 98.CEL	7.5711346	7e-4	P
	Atlas 77.CEL	7.7979116	2e-4	P
	Atlas 99.CEL	7.6855154	2e-4	P
TobEA young shoot	Atlas 89.CEL	8.351569	2e-4	P
	Atlas 88.CEL	8.991327	2e-4	P
	Atlas 86.CEL	9.034502	2e-4	P
	Atlas 87.CEL	8.761492	7e-4	P
	Atlas 90.CEL	8.442845	2e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (6 templates correlated)

Template	Pearson	Internal Mapping
C3446_s_at	0.860776	SGN-U423740
DV159617_at	0.8439827	SGN-U430085
TT50_H10_at	0.8219482	SGN-U433598
EB428729_at	0.818858	SGN-U434235
EB428449_at	0.8158565	SGN-U423740
EB441609_at	0.806217	SGN-U426447

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