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Expression Template: DV162563_at

Template Basic Information

Template name:	DV162563_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U442330
External db links:	GenBank: DV162563

Annotations for unigene SGN-U442330 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157354312\|emb\|CAO46913.1\|	233	1e-59	66.95	717 bp (66.6%)	3
Description:	unnamed
arabidopsis	blastx	At5G49880.1	219	2e-57	61.89	732 bp (68.0%)	3
Description:	mitotic checkpoint family protein \| chr5:20299531-20305001 FORWARD
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
DV162563_at_probe_01	PM	data not available	data not available	1
DV162563_at_probe_02	PM	data not available	data not available	1
DV162563_at_probe_03	PM	data not available	data not available	1
DV162563_at_probe_04	PM	data not available	data not available	1
DV162563_at_probe_05	PM	data not available	data not available	1
DV162563_at_probe_06	PM	data not available	data not available	1
DV162563_at_probe_07	PM	data not available	data not available	1
DV162563_at_probe_08	PM	data not available	data not available	1
DV162563_at_probe_09	PM	data not available	data not available	1
DV162563_at_probe_10	PM	data not available	data not available	1
DV162563_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	8.88	8.93	0.16	0.02
	TobEA vegetative shoot apex	shoot apex	8	8	8.25	8.19	0.42	0.05
	TobEA closed bud	flower bud	5	5	8.40	8.37	0.11	0.01
	TobEA open bud	flower bud	5	5	7.89	7.92	0.32	0.04
	TobEA cotyledons	cotyledon	5	5	6.81	6.91	0.54	0.08
	TobEA flower	flower	5	5	7.76	7.91	0.33	0.04
	TobEA lower stem	stem internode	5	5	8.30	8.19	0.26	0.03
	TobEA upper stem	stem internode	5	5	7.75	7.72	0.25	0.03
	TobEA cauline leaf	cauline leaf	5	5	7.42	7.46	0.12	0.02
	TobEA early senescent leaf	adult vascular leaf	5	5	6.87	6.70	0.85	0.12
	TobEA late senescent leaf	adult vascular leaf	5	5	7.50	7.60	0.24	0.03
	TobEA mature leaf	adult vascular leaf	5	5	7.44	7.44	0.29	0.04
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	6.33	5.97	0.85	0.13
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	7.07	7.59	0.85	0.12
	TobEA young leaf	juvenile vascular leaf	5	5	7.94	7.93	0.25	0.03
	TobEA mature root	root	5	5	8.07	8.09	0.17	0.02
	TobEA young root	root	6	6	7.63	7.71	0.30	0.04
	TobEA seed	seed	6	6	7.58	7.50	0.44	0.06
	TobEA young shoot	shoot system	5	5	7.34	7.32	0.16	0.02

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 144.CEL	9.03421	2e-4	P
	Atlas 145.CEL	8.9868355	2e-4	P
	Atlas 146.CEL	8.639635	2e-4	P
	Atlas 143.CEL	8.788134	2e-4	P
	Atlas 147.CEL	8.926276	2e-4	P
TobEA vegetative shoot apex	Atlas 58.CEL	7.9444957	2e-4	P
	Atlas 59.CEL	7.8340306	2e-4	P
	Atlas 248.CEL	7.7355986	2e-4	P
	Atlas 250.CEL	8.539977	2e-4	P
	Atlas 61.CEL	8.185161	2e-4	P
	Atlas 246.CEL	8.800297	2e-4	P
	Atlas 247.CEL	8.785402	2e-4	P
	Atlas 249.CEL	8.199011	2e-4	P
TobEA closed bud	Atlas 163.CEL	8.471389	2e-4	P
	Atlas 161.CEL	8.558874	2e-4	P
	Atlas 199.CEL	8.373638	2e-4	P
	Atlas 173.CEL	8.351331	2e-4	P
	Atlas 195.CEL	8.268068	2e-4	P
TobEA open bud	Atlas 159.CEL	7.7735987	7e-4	P
	Atlas 167.CEL	8.265701	2e-4	P
	Atlas 171.CEL	8.083964	2e-4	P
	Atlas 244.CEL	7.427533	2e-4	P
	Atlas 169.CEL	7.9216504	2e-4	P
TobEA cotyledons	Atlas 70.CEL	6.2985544	0.014	P
	Atlas 69.CEL	7.1785	2e-4	P
	Atlas 75.CEL	6.9053106	0.003	P
	Atlas 71.CEL	7.4526296	2e-4	P
	Atlas 74.CEL	6.2273874	0.019	P
TobEA flower	Atlas 197.CEL	7.922395	2e-4	P
	Atlas 158.CEL	7.907482	2e-4	P
	Atlas 165.CEL	7.7647486	7e-4	P
	Atlas 166.CEL	7.2039075	2e-4	P
	Atlas 198.CEL	8.016665	2e-4	P
TobEA lower stem	Atlas 164.CEL	8.194976	2e-4	P
	Atlas 172.CEL	8.113121	2e-4	P
	Atlas 245.CEL	8.673247	2e-4	P
	Atlas 200.CEL	8.470217	2e-4	P
	Atlas 174.CEL	8.059943	2e-4	P
TobEA upper stem	Atlas 168.CEL	7.861025	2e-4	P
	Atlas 160.CEL	7.7153506	2e-4	P
	Atlas 162.CEL	7.620314	2e-4	P
	Atlas 170.CEL	7.460668	2e-4	P
	Atlas 196.CEL	8.105462	2e-4	P
TobEA cauline leaf	Atlas 229.CEL	7.498672	2e-4	P
	Atlas 233.CEL	7.5175858	2e-4	P
	Atlas 231.CEL	7.2095366	2e-4	P
	Atlas 235.CEL	7.4580736	2e-4	P
	Atlas 237.CEL	7.4368405	2e-4	P
TobEA early senescent leaf	Atlas 187.CEL	7.805634	0.001	P
	Atlas 175.CEL	6.4518533	2e-4	P
	Atlas 182.CEL	6.6983795	0.003	P
	Atlas 183.CEL	5.7523785	0.399	A
	Atlas 191.CEL	7.616828	2e-4	P
TobEA late senescent leaf	Atlas 178.CEL	7.3176446	2e-4	P
	Atlas 179.CEL	7.6958423	2e-4	P
	Atlas 186.CEL	7.177555	0.001	P
	Atlas 194.CEL	7.5983853	2e-4	P
	Atlas 190.CEL	7.729567	7e-4	P
TobEA mature leaf	Atlas 94.CEL	7.566129	2e-4	P
	Atlas 95.CEL	6.987595	2e-4	P
	Atlas 93.CEL	7.786912	2e-4	P
	Atlas 96.CEL	7.442093	2e-4	P
	Atlas 97.CEL	7.424224	2e-4	P
TobEA mid/early senescent leaf	Atlas 188.CEL	6.551341	2e-4	P
	Atlas 181.CEL	7.704359	0.002	P
	Atlas 184.CEL	5.9652023	0.003	P
	Atlas 176.CEL	5.5429344	7e-4	P
	Atlas 192.CEL	5.9108963	0.002	P
TobEA mid/late senescent leaf	Atlas 177.CEL	6.403717	0.046	P
	Atlas 180.CEL	7.7260394	2e-4	P
	Atlas 185.CEL	7.697764	2e-4	P
	Atlas 193.CEL	5.916961	0.001	P
	Atlas 189.CEL	7.5933423	0.002	P
TobEA young leaf	Atlas 54.CEL	7.65213	7e-4	P
	Atlas 53.CEL	7.929975	2e-4	P
	Atlas 57.CEL	8.235565	2e-4	P
	Atlas 55.CEL	8.124008	2e-4	P
	Atlas 56.CEL	7.7403345	2e-4	P
TobEA mature root	Atlas 63.CEL	8.092533	2e-4	P
	Atlas 66.CEL	8.174071	2e-4	P
	Atlas 67.CEL	7.875905	2e-4	P
	Atlas 65.CEL	7.91829	2e-4	P
	Atlas 64.CEL	8.271938	2e-4	P
TobEA young root	Atlas 40.CEL	7.8545504	2e-4	P
	Atlas 39.CEL	7.346236	2e-4	P
	Atlas 42.CEL	7.754944	2e-4	P
	Atlas 41.CEL	7.9492197	7e-4	P
	Atlas 43.CEL	7.191079	7e-4	P
	Atlas 44.CEL	7.6591854	2e-4	P
TobEA seed	Atlas 76.CEL	7.0537076	2e-4	P
	Atlas 78.CEL	7.728103	7e-4	P
	Atlas 79.CEL	7.4538703	7e-4	P
	Atlas 98.CEL	7.5409474	2e-4	P
	Atlas 77.CEL	8.343243	2e-4	P
	Atlas 99.CEL	7.334047	2e-4	P
TobEA young shoot	Atlas 88.CEL	7.589626	2e-4	P
	Atlas 89.CEL	7.209623	0.002	P
	Atlas 87.CEL	7.3154063	2e-4	P
	Atlas 86.CEL	7.369685	7e-4	P
	Atlas 90.CEL	7.191616	2e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (35 templates correlated)

Template	Pearson	Internal Mapping
EB437390_at	0.8715865	SGN-U443010
EB427300_at	0.8667616	SGN-U450010
AJ718372_at	0.8641559	SGN-U438537
BP530396_s_at	0.8624621	SGN-U446590
TT35_D04_at	0.8522307	SGN-U450628
AJ718300_at	0.8503417	SGN-U440958
C3458_at	0.8399953	SGN-U436831
TT06_H24_at	0.8374123	SGN-U438698
C651_at	0.8371731	SGN-U438950
EB446047_at	0.8357957	SGN-U430256
EB681410_at	0.8311485	SGN-U485890
DV162195_at	0.828438	SGN-U485787
EB446047_x_at	0.8276572	SGN-U430256
C5264_at	0.8243606	SGN-U442865
C6141_at	0.8216529	SGN-U449037
DW004216_at	0.8203893	SGN-U441564
BP528477_at	0.8194059	SGN-U501179
BP532739_at	0.8152994	SGN-U476121
C7248_s_at	0.8151273	SGN-U439032
C963_at	0.8143231	SGN-U439545
DW000697_at	0.8142432	SGN-U438698
DV162099_at	0.812856	SGN-U487200
EB682764_at	0.8124957	SGN-U480517
C11340_at	0.8118591	No available
EB440405_x_at	0.8113396	SGN-U464241
DV162089_at	0.8102584	SGN-U503177
C1959_at	0.8085674	SGN-U426871
TT25_L10_at	0.808068	SGN-U486917
EB447413_at	0.8071906	SGN-U425587
EB442083_at	0.805619	SGN-U428898
DW005207_at	0.8039047	SGN-U422176
C7601_at	0.8024467	SGN-U438525
DV160082_at	0.8009264	SGN-U435880
TT29_E10_at	0.800551	SGN-U450212
C8523_at	0.8003026	SGN-U450681

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