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Expression Template: DV160658_x_at

Template Basic Information

Template name:	DV160658_x_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U458570
External db links:	GenBank: DV160658

Annotations for unigene SGN-U458570 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|118487775\|gb\|ABK95711.1\|	207	9e-52	65.43	537 bp (59.1%)	3
Description:	unknown
arabidopsis	blastx	At3G23050.1	200	9e-52	63.89	522 bp (57.4%)	3
Description:	Symbols: AXR2, IAA7 \| IAA7 (AUXIN RESISTANT 2); transcription factor \| chr3:8194775-8196723 FORWARD
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
DV160658_x_at_probe_01	PM	data not available	data not available	1
DV160658_x_at_probe_02	PM	data not available	data not available	1
DV160658_x_at_probe_03	PM	data not available	data not available	1
DV160658_x_at_probe_04	PM	data not available	data not available	1
DV160658_x_at_probe_05	PM	data not available	data not available	1
DV160658_x_at_probe_06	PM	data not available	data not available	1
DV160658_x_at_probe_07	PM	data not available	data not available	1
DV160658_x_at_probe_08	PM	data not available	data not available	1
DV160658_x_at_probe_09	PM	data not available	data not available	1
DV160658_x_at_probe_10	PM	data not available	data not available	1
DV160658_x_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	8.16	8.25	0.26	0.03
	TobEA vegetative shoot apex	shoot apex	8	8	9.88	9.94	0.27	0.03
	TobEA closed bud	flower bud	5	5	8.67	8.78	0.18	0.02
	TobEA open bud	flower bud	5	5	8.56	8.69	0.30	0.03
	TobEA cotyledons	cotyledon	5	5	5.10	5.33	1.68	0.33
	TobEA flower	flower	5	5	7.61	7.36	0.47	0.06
	TobEA lower stem	stem internode	5	5	10.50	10.65	0.30	0.03
	TobEA upper stem	stem internode	5	5	10.79	10.77	0.34	0.03
	TobEA cauline leaf	cauline leaf	5	5	7.81	7.82	0.44	0.06
	TobEA early senescent leaf	adult vascular leaf	5	5	8.22	7.71	0.95	0.12
	TobEA late senescent leaf	adult vascular leaf	5	5	6.95	7.20	0.52	0.08
	TobEA mature leaf	adult vascular leaf	5	5	8.44	8.29	0.30	0.04
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	8.44	8.35	0.51	0.06
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	7.35	7.51	0.89	0.12
	TobEA young leaf	juvenile vascular leaf	5	5	9.50	9.62	0.19	0.02
	TobEA mature root	root	5	5	7.87	7.93	0.39	0.05
	TobEA young root	root	6	6	7.89	8.08	0.64	0.08
	TobEA seed	seed	6	6	3.54	3.11	1.29	0.36
	TobEA young shoot	shoot system	5	5	8.53	8.52	0.34	0.04

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 146.CEL	7.7567964	0.004	P
	Atlas 144.CEL	8.037717	0.006	P
	Atlas 145.CEL	8.389351	0.004	P
	Atlas 143.CEL	8.248331	0.004	P
	Atlas 147.CEL	8.367025	0.004	P
TobEA vegetative shoot apex	Atlas 61.CEL	10.25304	0.002	P
	Atlas 247.CEL	9.463696	7e-4	P
	Atlas 250.CEL	9.734734	0.002	P
	Atlas 59.CEL	9.848438	0.004	P
	Atlas 246.CEL	9.567889	0.002	P
	Atlas 248.CEL	10.047515	0.001	P
	Atlas 249.CEL	10.084639	0.002	P
	Atlas 58.CEL	10.025294	2e-4	P
TobEA closed bud	Atlas 173.CEL	8.775911	0.003	P
	Atlas 161.CEL	8.380292	0.003	P
	Atlas 163.CEL	8.781577	0.004	P
	Atlas 195.CEL	8.593581	0.006	P
	Atlas 199.CEL	8.81825	0.006	P
TobEA open bud	Atlas 167.CEL	8.399215	0.006	P
	Atlas 169.CEL	8.123702	0.006	P
	Atlas 244.CEL	8.719694	0.002	P
	Atlas 159.CEL	8.6894045	0.006	P
	Atlas 171.CEL	8.874126	0.006	P
TobEA cotyledons	Atlas 69.CEL	5.907542	0.219	A
	Atlas 74.CEL	5.3271914	0.500	A
	Atlas 70.CEL	5.189207	0.500	A
	Atlas 71.CEL	6.761222	0.171	A
	Atlas 75.CEL	2.3048863	0.666	A
TobEA flower	Atlas 166.CEL	7.253347	0.011	P
	Atlas 197.CEL	7.3550534	2e-4	P
	Atlas 198.CEL	7.1976857	0.004	P
	Atlas 158.CEL	8.057258	0.003	P
	Atlas 165.CEL	8.16758	0.002	P
TobEA lower stem	Atlas 245.CEL	10.008247	0.002	P
	Atlas 164.CEL	10.76553	0.004	P
	Atlas 174.CEL	10.645763	0.001	P
	Atlas 172.CEL	10.400478	0.004	P
	Atlas 200.CEL	10.666353	0.001	P
TobEA upper stem	Atlas 162.CEL	11.227446	0.003	P
	Atlas 170.CEL	11.028252	7e-4	P
	Atlas 160.CEL	10.440568	0.003	P
	Atlas 168.CEL	10.772286	2e-4	P
	Atlas 196.CEL	10.483054	7e-4	P
TobEA cauline leaf	Atlas 231.CEL	7.820884	0.008	P
	Atlas 233.CEL	7.920033	7e-4	P
	Atlas 229.CEL	7.6274114	7e-4	P
	Atlas 237.CEL	7.2241917	0.006	P
	Atlas 235.CEL	8.439945	7e-4	P
TobEA early senescent leaf	Atlas 182.CEL	9.725718	0.003	P
	Atlas 183.CEL	7.648974	0.003	P
	Atlas 187.CEL	7.4316564	0.008	P
	Atlas 191.CEL	7.7129397	0.002	P
	Atlas 175.CEL	8.589939	7e-4	P
TobEA late senescent leaf	Atlas 194.CEL	6.715731	0.014	P
	Atlas 178.CEL	6.1407094	0.003	P
	Atlas 179.CEL	7.200926	0.046	P
	Atlas 186.CEL	7.394809	0.024	P
	Atlas 190.CEL	7.3020763	0.014	P
TobEA mature leaf	Atlas 96.CEL	8.850469	0.002	P
	Atlas 93.CEL	8.6400175	0.003	P
	Atlas 94.CEL	8.250698	7e-4	P
	Atlas 95.CEL	8.288324	2e-4	P
	Atlas 97.CEL	8.14735	0.002	P
TobEA mid/early senescent leaf	Atlas 176.CEL	8.557262	0.006	P
	Atlas 192.CEL	8.01552	7e-4	P
	Atlas 181.CEL	8.034172	0.003	P
	Atlas 184.CEL	9.254653	0.003	P
	Atlas 188.CEL	8.345317	2e-4	P
TobEA mid/late senescent leaf	Atlas 177.CEL	8.211157	0.003	P
	Atlas 193.CEL	7.3197303	0.003	P
	Atlas 180.CEL	7.84041	0.008	P
	Atlas 185.CEL	7.5110106	0.081	A
	Atlas 189.CEL	5.8755965	0.056	M
TobEA young leaf	Atlas 53.CEL	9.295898	0.006	P
	Atlas 54.CEL	9.629616	0.004	P
	Atlas 56.CEL	9.28462	0.002	P
	Atlas 55.CEL	9.646942	0.002	P
	Atlas 57.CEL	9.619348	0.004	P
TobEA mature root	Atlas 64.CEL	8.170728	0.008	P
	Atlas 65.CEL	8.215795	0.006	P
	Atlas 66.CEL	7.766504	0.001	P
	Atlas 67.CEL	7.9315057	0.002	P
	Atlas 63.CEL	7.2604327	0.001	P
TobEA young root	Atlas 39.CEL	8.291157	0.003	P
	Atlas 41.CEL	8.164558	0.002	P
	Atlas 42.CEL	7.996121	0.004	P
	Atlas 44.CEL	6.907291	0.003	P
	Atlas 40.CEL	8.646698	0.002	P
	Atlas 43.CEL	7.357916	0.019	P
TobEA seed	Atlas 76.CEL	4.1278462	0.568	A
	Atlas 99.CEL	2.5628958	0.601	A
	Atlas 78.CEL	2.885976	0.666	A
	Atlas 98.CEL	2.4852614	0.534	A
	Atlas 77.CEL	5.868409	0.246	A
	Atlas 79.CEL	3.3307602	0.500	A
TobEA young shoot	Atlas 87.CEL	8.115698	0.002	P
	Atlas 89.CEL	8.301226	0.006	P
	Atlas 86.CEL	8.860664	0.002	P
	Atlas 88.CEL	8.877681	0.014	P
	Atlas 90.CEL	8.518261	0.014	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (6 templates correlated)

Template	Pearson	Internal Mapping
C11223_s_at	0.9256961	SGN-U447098
DV160658_at	0.8601252	SGN-U458570
DV999540_at	0.8369377	SGN-U430525
DV161859_at	0.8180812	SGN-U472083
DV160322_at	0.8119122	SGN-U448484
C10819_at	0.8013694	SGN-U424955

Correlation Type:

Negative correlations (2 templates correlated)

Template	Pearson	Internal Mapping
C11258_x_at	-0.8085079	SGN-U448527
C11258_at	-0.8053501	SGN-U448527

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