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Expression Template: CV020487_x_at

Template Basic Information

Template name:	CV020487_x_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U444954
External db links:	GenBank: CV020487

Annotations for unigene SGN-U444954 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|40287554\|gb\|AAR83891.1\|	311	2e-83	100	444 bp (64.4%)	3
Description:	ubiquitin-conjugating enzyme 8 [Capsicum annuum] >gi80975780\|gb\|ABB54487.1\| ubiquitin-conjugati&hellip
arabidopsis	blastx	At4G27960.2	307	3e-84	94.7	453 bp (65.7%)	3
Description:	Symbols: UBC9 \| UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase \| chr4:1391607&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
CV020487_x_at_probe_01	PM	data not available	data not available	1
CV020487_x_at_probe_02	PM	data not available	data not available	1
CV020487_x_at_probe_03	PM	data not available	data not available	1
CV020487_x_at_probe_04	PM	data not available	data not available	1
CV020487_x_at_probe_05	PM	data not available	data not available	1
CV020487_x_at_probe_06	PM	data not available	data not available	1
CV020487_x_at_probe_07	PM	data not available	data not available	1
CV020487_x_at_probe_08	PM	data not available	data not available	1
CV020487_x_at_probe_09	PM	data not available	data not available	1
CV020487_x_at_probe_10	PM	data not available	data not available	1
CV020487_x_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	8.18	8.11	0.30	0.04
	TobEA vegetative shoot apex	shoot apex	8	8	8.71	8.69	0.37	0.04
	TobEA closed bud	flower bud	5	5	8.80	8.74	0.36	0.04
	TobEA open bud	flower bud	5	5	8.83	8.73	0.28	0.03
	TobEA cotyledons	cotyledon	5	5	8.17	7.97	0.37	0.05
	TobEA flower	flower	5	5	9.16	9.14	0.45	0.05
	TobEA lower stem	stem internode	5	5	9.40	9.43	0.41	0.04
	TobEA upper stem	stem internode	5	5	8.70	8.84	0.49	0.06
	TobEA cauline leaf	cauline leaf	5	5	9.52	9.48	0.13	0.01
	TobEA early senescent leaf	adult vascular leaf	5	5	9.90	9.94	0.17	0.02
	TobEA late senescent leaf	adult vascular leaf	5	5	9.64	9.65	0.23	0.02
	TobEA mature leaf	adult vascular leaf	5	5	9.59	9.58	0.30	0.03
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	9.74	9.82	0.34	0.04
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	9.72	9.71	0.37	0.04
	TobEA young leaf	juvenile vascular leaf	5	5	8.32	8.24	0.27	0.03
	TobEA mature root	root	5	5	8.85	8.98	0.33	0.04
	TobEA young root	root	6	6	8.69	8.68	0.21	0.02
	TobEA seed	seed	6	6	8.58	8.67	0.33	0.04
	TobEA young shoot	shoot system	5	5	8.28	8.22	0.16	0.02

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 145.CEL	8.310105	0.002	P
	Atlas 143.CEL	8.11395	0.004	P
	Atlas 144.CEL	7.8768053	0.002	P
	Atlas 146.CEL	8.634201	0.019	P
	Atlas 147.CEL	7.9860144	0.030	P
TobEA vegetative shoot apex	Atlas 246.CEL	8.376151	0.002	P
	Atlas 249.CEL	8.746277	0.003	P
	Atlas 58.CEL	8.720093	0.003	P
	Atlas 247.CEL	8.168984	0.001	P
	Atlas 250.CEL	9.151564	7e-4	P
	Atlas 59.CEL	9.311072	0.004	P
	Atlas 248.CEL	8.581034	0.004	P
	Atlas 61.CEL	8.661123	0.004	P
TobEA closed bud	Atlas 173.CEL	8.45758	0.003	P
	Atlas 195.CEL	8.932329	0.004	P
	Atlas 199.CEL	8.73618	0.014	P
	Atlas 161.CEL	9.352698	0.008	P
	Atlas 163.CEL	8.51284	2e-4	P
TobEA open bud	Atlas 159.CEL	8.6008215	0.011	P
	Atlas 169.CEL	8.732502	0.004	P
	Atlas 167.CEL	8.682255	0.014	P
	Atlas 171.CEL	9.3062525	0.006	P
	Atlas 244.CEL	8.833845	0.001	P
TobEA cotyledons	Atlas 69.CEL	7.8329697	0.024	P
	Atlas 75.CEL	8.731056	0.019	P
	Atlas 70.CEL	7.9507375	7e-4	P
	Atlas 71.CEL	7.9710264	0.008	P
	Atlas 74.CEL	8.344103	0.002	P
TobEA flower	Atlas 158.CEL	9.13627	0.014	P
	Atlas 165.CEL	8.829598	0.001	P
	Atlas 166.CEL	8.661559	0.006	P
	Atlas 198.CEL	9.794722	0.004	P
	Atlas 197.CEL	9.38576	7e-4	P
TobEA lower stem	Atlas 172.CEL	9.669417	0.006	P
	Atlas 164.CEL	9.902049	0.002	P
	Atlas 245.CEL	9.096135	0.004	P
	Atlas 174.CEL	9.432305	0.003	P
	Atlas 200.CEL	8.91163	7e-4	P
TobEA upper stem	Atlas 160.CEL	8.966853	0.004	P
	Atlas 162.CEL	9.240537	0.008	P
	Atlas 168.CEL	8.503037	0.002	P
	Atlas 170.CEL	8.840295	0.006	P
	Atlas 196.CEL	7.964075	0.006	P
TobEA cauline leaf	Atlas 231.CEL	9.355009	7e-4	P
	Atlas 235.CEL	9.699858	0.002	P
	Atlas 237.CEL	9.478238	0.003	P
	Atlas 233.CEL	9.452672	0.006	P
	Atlas 229.CEL	9.5996	0.006	P
TobEA early senescent leaf	Atlas 175.CEL	9.8512945	0.004	P
	Atlas 182.CEL	9.668131	0.002	P
	Atlas 191.CEL	9.935614	0.006	P
	Atlas 183.CEL	10.124837	0.004	P
	Atlas 187.CEL	9.936975	0.008	P
TobEA late senescent leaf	Atlas 178.CEL	9.645779	0.008	P
	Atlas 179.CEL	9.906489	0.008	P
	Atlas 194.CEL	9.399137	7e-4	P
	Atlas 186.CEL	9.816269	0.004	P
	Atlas 190.CEL	9.428711	0.056	M
TobEA mature leaf	Atlas 94.CEL	9.201491	0.001	P
	Atlas 95.CEL	9.735432	0.003	P
	Atlas 96.CEL	10.009873	0.002	P
	Atlas 93.CEL	9.445689	0.002	P
	Atlas 97.CEL	9.580616	0.004	P
TobEA mid/early senescent leaf	Atlas 188.CEL	9.821864	0.011	P
	Atlas 192.CEL	9.159112	0.002	P
	Atlas 181.CEL	10.087944	0.006	P
	Atlas 176.CEL	9.775034	0.008	P
	Atlas 184.CEL	9.831098	0.001	P
TobEA mid/late senescent leaf	Atlas 185.CEL	10.223716	0.006	P
	Atlas 177.CEL	9.827794	0.004	P
	Atlas 180.CEL	9.210297	0.056	M
	Atlas 189.CEL	9.711389	0.030	P
	Atlas 193.CEL	9.6172285	0.003	P
TobEA young leaf	Atlas 54.CEL	8.635452	0.011	P
	Atlas 55.CEL	7.982934	0.004	P
	Atlas 56.CEL	8.197991	0.014	P
	Atlas 53.CEL	8.244569	0.003	P
	Atlas 57.CEL	8.563758	0.011	P
TobEA mature root	Atlas 64.CEL	9.040124	0.011	P
	Atlas 65.CEL	8.978046	0.030	P
	Atlas 63.CEL	8.32892	0.001	P
	Atlas 66.CEL	9.160585	0.003	P
	Atlas 67.CEL	8.7555065	0.004	P
TobEA young root	Atlas 41.CEL	8.871384	0.002	P
	Atlas 43.CEL	8.68119	0.002	P
	Atlas 44.CEL	8.907449	0.006	P
	Atlas 42.CEL	8.681544	0.002	P
	Atlas 39.CEL	8.307742	0.024	P
	Atlas 40.CEL	8.670892	0.002	P
TobEA seed	Atlas 78.CEL	8.878869	0.011	P
	Atlas 79.CEL	7.969317	7e-4	P
	Atlas 98.CEL	8.524662	0.011	P
	Atlas 76.CEL	8.734895	0.002	P
	Atlas 99.CEL	8.787065	0.003	P
	Atlas 77.CEL	8.608807	0.004	P
TobEA young shoot	Atlas 88.CEL	8.545693	0.030	P
	Atlas 89.CEL	8.176818	0.006	P
	Atlas 86.CEL	8.142924	0.004	P
	Atlas 90.CEL	8.220594	0.001	P
	Atlas 87.CEL	8.303172	0.011	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (43 templates correlated)

Template	Pearson	Internal Mapping
C7235_at	0.8448366	SGN-U423770
C3954_at	0.8407	SGN-U449000
DW002175_s_at	0.8406014	SGN-U433218
DW002271_s_at	0.8389587	SGN-U455301
C4786_at	0.838922	SGN-U447749
C6676_at	0.8378348	SGN-U445675
C4914_at	0.8368059	SGN-U432750
DV161716_at	0.8360141	SGN-U450189
C10926_x_at	0.8340619	SGN-U445809
C8832_s_at	0.832777	SGN-U445809
TT29_M10_at	0.831969	SGN-U447818
EB449275_at	0.8312077	SGN-U441604
DV160344_at	0.8307768	SGN-U474073
C8246_s_at	0.8289967	SGN-U448108
C2061_at	0.8282597	SGN-U445626
C10886_at	0.8262821	SGN-U450600
C2061_s_at	0.8252967	SGN-U445626
DW000595_at	0.8247899	SGN-U421724
EB431558_at	0.8229358	No available
C11058_at	0.8223945	SGN-U440779
TT12_B04_at	0.8222268	SGN-U443334
C6394_s_at	0.8222158	SGN-U440560
C4791_s_at	0.81921	SGN-U438915
C697_at	0.8183218	SGN-U426826
C3474_at	0.8180202	SGN-U450062
C9896_s_at	0.8173301	SGN-U444058
C3338_at	0.8169577	SGN-U447834
CV018571_at	0.8158903	SGN-U436167
DW003870_at	0.8144919	SGN-U431988
C3496_at	0.8111289	SGN-U451222
BP533602_at	0.8102222	SGN-U448756
TT10_K17_at	0.8083372	SGN-U468909
C11654_s_at	0.8078388	SGN-U447515
C8829_s_at	0.8077607	SGN-U453824
C1680_s_at	0.8059245	SGN-U447834
CV018571_x_at	0.8055495	SGN-U436167
EB425527_at	0.805079	SGN-U465269
C6309_at	0.804922	SGN-U451475
C7273_s_at	0.8039641	SGN-U426828
C6906_at	0.8025199	SGN-U432073
C8809_at	0.8022536	SGN-U433565
C7273_at	0.8020834	SGN-U426828
C8317_s_at	0.801827	SGN-U441112

Correlation Type:

Negative correlations (11 templates correlated)

Template	Pearson	Internal Mapping
C7763_at	-0.8333961	SGN-U422735
TT05_I14_at	-0.8189262	SGN-U440472
C5098_at	-0.8166985	SGN-U422735
DV999056_at	-0.8153848	SGN-U451492
C3297_s_at	-0.8142707	SGN-U444580
EB677203_s_at	-0.8121704	SGN-U466680
C9452_at	-0.8084012	SGN-U439864
TT17_C19_s_at	-0.8064737	SGN-U436524
C3297_at	-0.8060433	SGN-U444580
C7770_at	-0.804882	SGN-U425630
C3141_at	-0.8018724	SGN-U431380

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