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Expression Template: CV019292_at

Template Basic Information

Template name:	CV019292_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U435737
External db links:	GenBank: CV019292

Annotations for unigene SGN-U435737 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|63253080\|dbj\|BAD98314.1\|	492	3e-137	82.2	1005 bp (76.2%)	3
Description:	peroxidase [Nicotiana tabacum]
arabidopsis	blastx	At5G05340.1	215	6e-56	49.12	828 bp (62.8%)	3
Description:	peroxidase, putative \| chr5:1579143-1580820 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
CV019292_at_probe_01	PM	data not available	data not available	1
CV019292_at_probe_02	PM	data not available	data not available	1
CV019292_at_probe_03	PM	data not available	data not available	1
CV019292_at_probe_04	PM	data not available	data not available	1
CV019292_at_probe_05	PM	data not available	data not available	1
CV019292_at_probe_06	PM	data not available	data not available	1
CV019292_at_probe_07	PM	data not available	data not available	1
CV019292_at_probe_08	PM	data not available	data not available	1
CV019292_at_probe_09	PM	data not available	data not available	1
CV019292_at_probe_10	PM	data not available	data not available	1
CV019292_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	3.85	4.49	1.17	0.30
	TobEA vegetative shoot apex	shoot apex	8	8	3.70	3.85	0.64	0.17
	TobEA closed bud	flower bud	5	5	3.36	3.67	1.22	0.36
	TobEA open bud	flower bud	5	5	2.68	3.70	1.94	0.72
	TobEA cotyledons	cotyledon	5	5	3.28	4.10	1.25	0.38
	TobEA flower	flower	5	5	2.43	2.77	1.16	0.48
	TobEA lower stem	stem internode	5	5	2.93	3.26	2.48	0.85
	TobEA upper stem	stem internode	5	5	2.54	2.08	1.35	0.53
	TobEA cauline leaf	cauline leaf	5	5	2.81	2.91	0.83	0.29
	TobEA early senescent leaf	adult vascular leaf	5	5	4.47	4.69	1.79	0.40
	TobEA late senescent leaf	adult vascular leaf	5	5	2.72	2.36	1.67	0.61
	TobEA mature leaf	adult vascular leaf	5	5	2.43	2.94	1.85	0.76
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	3.92	2.89	1.65	0.42
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	4.96	5.00	1.03	0.21
	TobEA young leaf	juvenile vascular leaf	5	5	2.24	2.48	1.28	0.57
	TobEA mature root	root	5	5	10.90	10.93	0.17	0.02
	TobEA young root	root	6	6	9.99	10.09	0.69	0.07
	TobEA seed	seed	6	6	3.36	3.99	1.63	0.49
	TobEA young shoot	shoot system	5	5	2.87	2.58	1.19	0.42

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 143.CEL	4.4946284	0.334	A
	Atlas 147.CEL	4.6407423	0.534	A
	Atlas 144.CEL	4.7617784	0.130	A
	Atlas 145.CEL	3.3004582	0.696	A
	Atlas 146.CEL	2.0446308	0.754	A
TobEA vegetative shoot apex	Atlas 246.CEL	3.8026867	0.432	A
	Atlas 250.CEL	3.9069471	0.399	A
	Atlas 61.CEL	4.713383	0.219	A
	Atlas 248.CEL	4.1386404	0.334	A
	Atlas 249.CEL	3.9036164	0.432	A
	Atlas 59.CEL	3.3275414	0.500	A
	Atlas 247.CEL	3.1323366	0.366	A
	Atlas 58.CEL	2.6740727	0.568	A
TobEA closed bud	Atlas 163.CEL	4.0902815	0.195	A
	Atlas 173.CEL	3.3275964	0.568	A
	Atlas 161.CEL	4.3986454	0.274	A
	Atlas 195.CEL	3.6728165	0.568	A
	Atlas 199.CEL	1.3071147	0.850	A
TobEA open bud	Atlas 169.CEL	4.5423985	0.399	A
	Atlas 244.CEL	0.63029635	0.666	A
	Atlas 167.CEL	0.5326578	0.696	A
	Atlas 171.CEL	3.9891634	0.500	A
	Atlas 159.CEL	3.7033489	0.219	A
TobEA cotyledons	Atlas 75.CEL	2.161188	0.726	A
	Atlas 69.CEL	4.2150817	0.334	A
	Atlas 70.CEL	4.241848	0.626	A
	Atlas 74.CEL	4.1028485	0.568	A
	Atlas 71.CEL	1.687082	0.829	A
TobEA flower	Atlas 158.CEL	2.8002248	0.500	A
	Atlas 165.CEL	2.7671983	0.534	A
	Atlas 197.CEL	3.7665238	0.432	A
	Atlas 198.CEL	0.6130151	0.754	A
	Atlas 166.CEL	2.1832035	0.601	A
TobEA lower stem	Atlas 245.CEL	3.2582474	0.466	A
	Atlas 164.CEL	5.5978622	0.095	A
	Atlas 172.CEL	0.46315217	0.696	A
	Atlas 200.CEL	5.0221643	0.219	A
	Atlas 174.CEL	0.3031889	0.432	A
TobEA upper stem	Atlas 160.CEL	1.4014482	0.634	A
	Atlas 162.CEL	1.263539	0.781	A
	Atlas 168.CEL	4.141738	0.601	A
	Atlas 196.CEL	3.7988265	0.304	A
	Atlas 170.CEL	2.0760121	0.754	A
TobEA cauline leaf	Atlas 229.CEL	3.1617184	0.366	A
	Atlas 231.CEL	2.058069	0.601	A
	Atlas 233.CEL	3.966867	0.500	A
	Atlas 235.CEL	1.9722878	0.601	A
	Atlas 237.CEL	2.9086635	0.304	A
TobEA early senescent leaf	Atlas 187.CEL	6.2686896	0.081	A
	Atlas 175.CEL	4.531137	0.195	A
	Atlas 182.CEL	5.3518887	0.024	P
	Atlas 183.CEL	1.5200679	0.962	A
	Atlas 191.CEL	4.69191	0.432	A
TobEA late senescent leaf	Atlas 194.CEL	1.0815686	0.534	A
	Atlas 178.CEL	2.9668915	0.466	A
	Atlas 179.CEL	1.7762232	0.905	A
	Atlas 186.CEL	5.441235	0.095	A
	Atlas 190.CEL	2.355095	0.696	A
TobEA mature leaf	Atlas 95.CEL	1.0371573	0.696	A
	Atlas 93.CEL	3.576524	0.150	A
	Atlas 96.CEL	2.941233	0.399	A
	Atlas 94.CEL	4.5347214	0.296	A
	Atlas 97.CEL	0.042146966	0.781	A
TobEA mid/early senescent leaf	Atlas 181.CEL	6.271634	0.304	A
	Atlas 192.CEL	5.0464745	0.112	A
	Atlas 176.CEL	2.6775312	0.500	A
	Atlas 184.CEL	2.8922343	0.534	A
	Atlas 188.CEL	2.7141018	0.718	A
TobEA mid/late senescent leaf	Atlas 177.CEL	5.716737	0.171	A
	Atlas 180.CEL	3.4697084	0.601	A
	Atlas 189.CEL	4.999448	0.568	A
	Atlas 193.CEL	4.53615	0.112	A
	Atlas 185.CEL	6.096277	0.171	A
TobEA young leaf	Atlas 56.CEL	0.35858306	0.781	A
	Atlas 55.CEL	2.4772918	0.634	A
	Atlas 53.CEL	3.872296	0.334	A
	Atlas 54.CEL	1.8826188	0.781	A
	Atlas 57.CEL	2.6166816	0.601	A
TobEA mature root	Atlas 64.CEL	10.708518	7e-4	P
	Atlas 67.CEL	11.045748	0.002	P
	Atlas 65.CEL	10.93487	0.002	P
	Atlas 63.CEL	10.733573	0.002	P
	Atlas 66.CEL	11.073793	0.001	P
TobEA young root	Atlas 43.CEL	10.886804	0.001	P
	Atlas 40.CEL	10.480339	0.002	P
	Atlas 41.CEL	9.213464	0.002	P
	Atlas 44.CEL	10.176107	0.002	P
	Atlas 39.CEL	9.168953	0.006	P
	Atlas 42.CEL	9.998997	7e-4	P
TobEA seed	Atlas 76.CEL	4.4835773	0.366	A
	Atlas 77.CEL	1.8281027	0.870	A
	Atlas 98.CEL	4.3334484	0.466	A
	Atlas 78.CEL	4.9756126	0.304	A
	Atlas 79.CEL	0.89819926	0.888	A
	Atlas 99.CEL	3.6541865	0.466	A
TobEA young shoot	Atlas 89.CEL	3.6164608	0.696	A
	Atlas 87.CEL	2.1505983	0.195	A
	Atlas 90.CEL	2.5842915	0.534	A
	Atlas 86.CEL	4.4954247	0.304	A
	Atlas 88.CEL	1.4903612	0.774	A

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (12 templates correlated)

Template	Pearson	Internal Mapping
C96_at	0.8425943	SGN-U422573
C1719_at	0.8298381	SGN-U428121
C4525_s_at	0.8187151	SGN-U433780
C113_at	0.8140688	SGN-U439129
C4591_at	0.8100192	SGN-U433780
C9333_at	0.8091997	SGN-U450370
EB445915_s_at	0.8063293	SGN-U431412
CV017008_at	0.8059404	SGN-U472935
C1404_at	0.8050207	SGN-U437702
C4608_s_at	0.8042388	SGN-U444943
C4608_x_at	0.8026235	SGN-U444943
EB683603_at	0.8001826	SGN-U433364

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