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Expression Template: CV017877_at

Template Basic Information

Template name:	CV017877_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U467379
External db links:	GenBank: CV017877

Annotations for unigene SGN-U467379 (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits (or none blast was used over this dataset)
arabidopsis	blastx	No significant hits (or none blast was used over this dataset)
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
CV017877_at_probe_01	PM	data not available	data not available	1
CV017877_at_probe_02	PM	data not available	data not available	1
CV017877_at_probe_03	PM	data not available	data not available	1
CV017877_at_probe_04	PM	data not available	data not available	1
CV017877_at_probe_05	PM	data not available	data not available	1
CV017877_at_probe_06	PM	data not available	data not available	1
CV017877_at_probe_07	PM	data not available	data not available	1
CV017877_at_probe_08	PM	data not available	data not available	1
CV017877_at_probe_09	PM	data not available	data not available	1
CV017877_at_probe_10	PM	data not available	data not available	1
CV017877_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	9.93	9.89	0.22	0.02
	TobEA vegetative shoot apex	shoot apex	8	8	10.41	10.39	0.20	0.02
	TobEA closed bud	flower bud	5	5	10.39	10.40	0.10	0.01
	TobEA open bud	flower bud	5	5	10.28	10.28	0.16	0.02
	TobEA cotyledons	cotyledon	5	5	8.71	8.74	0.18	0.02
	TobEA flower	flower	5	5	9.79	9.74	0.14	0.01
	TobEA lower stem	stem internode	5	5	8.48	8.30	0.35	0.04
	TobEA upper stem	stem internode	5	5	10.09	10.24	0.55	0.05
	TobEA cauline leaf	cauline leaf	5	5	9.86	9.83	0.17	0.02
	TobEA early senescent leaf	adult vascular leaf	5	5	8.21	8.52	0.58	0.07
	TobEA late senescent leaf	adult vascular leaf	5	5	7.08	7.08	0.83	0.12
	TobEA mature leaf	adult vascular leaf	5	5	8.73	8.63	0.30	0.03
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	7.87	7.93	0.52	0.07
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	8.03	8.19	0.61	0.08
	TobEA young leaf	juvenile vascular leaf	5	5	10.10	10.12	0.08	0.01
	TobEA mature root	root	5	5	6.02	6.11	0.26	0.04
	TobEA young root	root	6	6	6.21	6.27	0.40	0.06
	TobEA seed	seed	6	6	7.72	7.75	0.43	0.06
	TobEA young shoot	shoot system	5	5	9.23	9.30	0.24	0.03

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 145.CEL	9.975619	2e-4	P
	Atlas 146.CEL	9.659458	7e-4	P
	Atlas 144.CEL	9.891699	7e-4	P
	Atlas 143.CEL	10.270668	7e-4	P
	Atlas 147.CEL	9.838781	7e-4	P
TobEA vegetative shoot apex	Atlas 61.CEL	10.599822	2e-4	P
	Atlas 248.CEL	10.35782	2e-4	P
	Atlas 58.CEL	10.181384	2e-4	P
	Atlas 59.CEL	10.12937	2e-4	P
	Atlas 246.CEL	10.39871	2e-4	P
	Atlas 249.CEL	10.712276	2e-4	P
	Atlas 247.CEL	10.374864	2e-4	P
	Atlas 250.CEL	10.491991	2e-4	P
TobEA closed bud	Atlas 173.CEL	10.260576	2e-4	P
	Atlas 199.CEL	10.39916	2e-4	P
	Atlas 163.CEL	10.423117	2e-4	P
	Atlas 195.CEL	10.349986	2e-4	P
	Atlas 161.CEL	10.535657	2e-4	P
TobEA open bud	Atlas 244.CEL	10.471086	2e-4	P
	Atlas 159.CEL	10.42209	2e-4	P
	Atlas 167.CEL	10.275358	2e-4	P
	Atlas 171.CEL	10.098134	2e-4	P
	Atlas 169.CEL	10.144839	2e-4	P
TobEA cotyledons	Atlas 70.CEL	8.917073	0.001	P
	Atlas 71.CEL	8.504742	7e-4	P
	Atlas 69.CEL	8.735535	2e-4	P
	Atlas 74.CEL	8.571683	2e-4	P
	Atlas 75.CEL	8.844202	7e-4	P
TobEA flower	Atlas 158.CEL	9.6443815	2e-4	P
	Atlas 166.CEL	9.838899	2e-4	P
	Atlas 197.CEL	10.017908	2e-4	P
	Atlas 198.CEL	9.739006	7e-4	P
	Atlas 165.CEL	9.720531	7e-4	P
TobEA lower stem	Atlas 174.CEL	8.943804	7e-4	P
	Atlas 200.CEL	8.758545	2e-4	P
	Atlas 245.CEL	8.122807	2e-4	P
	Atlas 164.CEL	8.2857485	2e-4	P
	Atlas 172.CEL	8.299785	0.001	P
TobEA upper stem	Atlas 162.CEL	9.297064	2e-4	P
	Atlas 170.CEL	10.24463	2e-4	P
	Atlas 160.CEL	10.608336	7e-4	P
	Atlas 168.CEL	9.778795	2e-4	P
	Atlas 196.CEL	10.539456	2e-4	P
TobEA cauline leaf	Atlas 231.CEL	10.099014	2e-4	P
	Atlas 233.CEL	9.960816	2e-4	P
	Atlas 235.CEL	9.641788	2e-4	P
	Atlas 229.CEL	9.782426	2e-4	P
	Atlas 237.CEL	9.830022	2e-4	P
TobEA early senescent leaf	Atlas 182.CEL	8.650027	2e-4	P
	Atlas 175.CEL	8.520953	2e-4	P
	Atlas 183.CEL	8.587536	0.002	P
	Atlas 187.CEL	7.9929585	0.014	P
	Atlas 191.CEL	7.287898	0.003	P
TobEA late senescent leaf	Atlas 178.CEL	6.6419425	7e-4	P
	Atlas 179.CEL	7.0784454	0.014	P
	Atlas 186.CEL	8.150603	7e-4	P
	Atlas 190.CEL	5.985999	0.019	P
	Atlas 194.CEL	7.5429244	7e-4	P
TobEA mature leaf	Atlas 94.CEL	9.112974	2e-4	P
	Atlas 93.CEL	8.991995	2e-4	P
	Atlas 97.CEL	8.509193	2e-4	P
	Atlas 95.CEL	8.62634	2e-4	P
	Atlas 96.CEL	8.421585	2e-4	P
TobEA mid/early senescent leaf	Atlas 181.CEL	8.02787	0.004	P
	Atlas 176.CEL	7.929227	0.001	P
	Atlas 184.CEL	8.45304	2e-4	P
	Atlas 188.CEL	7.900475	0.001	P
	Atlas 192.CEL	7.016707	2e-4	P
TobEA mid/late senescent leaf	Atlas 177.CEL	7.251476	0.001	P
	Atlas 189.CEL	8.357507	0.001	P
	Atlas 193.CEL	7.580352	7e-4	P
	Atlas 180.CEL	8.186379	7e-4	P
	Atlas 185.CEL	8.75491	0.003	P
TobEA young leaf	Atlas 54.CEL	10.12114	2e-4	P
	Atlas 56.CEL	10.188009	2e-4	P
	Atlas 57.CEL	9.981925	7e-4	P
	Atlas 53.CEL	10.138473	2e-4	P
	Atlas 55.CEL	10.084448	2e-4	P
TobEA mature root	Atlas 63.CEL	6.299409	0.006	P
	Atlas 66.CEL	6.106544	2e-4	P
	Atlas 65.CEL	5.840945	0.008	P
	Atlas 64.CEL	5.675058	0.038	P
	Atlas 67.CEL	6.184106	0.014	P
TobEA young root	Atlas 40.CEL	6.6862144	0.001	P
	Atlas 41.CEL	6.2764716	0.008	P
	Atlas 44.CEL	6.2608213	2e-4	P
	Atlas 39.CEL	6.5389	2e-4	P
	Atlas 42.CEL	5.884667	0.004	P
	Atlas 43.CEL	5.6075983	0.001	P
TobEA seed	Atlas 78.CEL	7.639851	0.002	P
	Atlas 79.CEL	7.8522854	0.003	P
	Atlas 98.CEL	7.987221	2e-4	P
	Atlas 77.CEL	7.5657363	7e-4	P
	Atlas 76.CEL	7.01773	2e-4	P
	Atlas 99.CEL	8.272735	0.001	P
TobEA young shoot	Atlas 88.CEL	9.303632	2e-4	P
	Atlas 87.CEL	9.342087	2e-4	P
	Atlas 86.CEL	9.15928	2e-4	P
	Atlas 89.CEL	8.858936	7e-4	P
	Atlas 90.CEL	9.476819	2e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (32 templates correlated)

Template	Pearson	Internal Mapping
C607_at	0.963287	SGN-U451303
C11336_at	0.880346	SGN-U439019
L13440_at	0.8638502	SGN-U445688
EB429602_at	0.8604758	SGN-U443242
EB681084_at	0.852151	SGN-U428426
C9114_at	0.8473303	SGN-U438900
TT10_J24_at	0.8465002	SGN-U424367
TT32_M07_at	0.8457547	SGN-U427568
C9610_at	0.8372233	No available
C9266_at	0.8357222	SGN-U451537
C3202_s_at	0.832678	SGN-U451537
C9314_at	0.8302032	SGN-U422212
C1754_at	0.8241086	SGN-U427243
C1929_s_at	0.8209656	SGN-U438901
C3862_at	0.8191211	SGN-U421975
DQ071272_s_at	0.8169975	SGN-U447792
TT34_E04_at	0.816895	SGN-U448136
EB437373_at	0.8168521	SGN-U431632
C8701_at	0.816847	SGN-U440072
C1929_at	0.8161467	SGN-U438901
C5530_at	0.8126756	SGN-U431967
C384_x_at	0.8125459	SGN-U445149
EB449430_at	0.8068024	SGN-U427415
BP135478_s_at	0.805708	SGN-U427572
EB444196_s_at	0.804956	No available
C5412_at	0.8049225	SGN-U448901
EB436976_at	0.8048708	SGN-U442836
C9843_at	0.8027747	SGN-U450492
DV160953_at	0.8026298	SGN-U427286
CV016010_at	0.8026068	SGN-U445903
CV019376_at	0.8014686	SGN-U445903
C9813_at	0.8002068	No available

Correlation Type:

Negative correlations (27 templates correlated)

Template	Pearson	Internal Mapping
C4513_at	-0.8718904	SGN-U445511
C1623_at	-0.8672441	SGN-U438504
C9200_at	-0.8634355	SGN-U433892
DW001599_s_at	-0.8566388	SGN-U444667
EB445278_at	-0.854184	No available
C9138_x_at	-0.8507258	SGN-U438501
C9198_at	-0.8488818	SGN-U427071
DW003125_at	-0.8476018	SGN-U445129
C4357_s_at	-0.8448149	SGN-U444667
BP129492_at	-0.8431367	SGN-U466334
C3553_at	-0.8342787	SGN-U448448
DW004753_at	-0.8325705	SGN-U455086
C10904_at	-0.8288187	SGN-U447580
AB196435_x_at	-0.823009	SGN-U438504
BP532664_at	-0.8216184	SGN-U426233
C10249_at	-0.821295	SGN-U443036
EB444290_at	-0.8197437	No available
TT02_J15_at	-0.8168662	SGN-U427627
C1803_at	-0.8166916	SGN-U441083
EB446288_at	-0.8160126	SGN-U442043
C6451_at	-0.8142696	SGN-U430906
CV019585_x_at	-0.8132518	SGN-U445083
C6362_at	-0.8131717	SGN-U439755
C9351_at	-0.810619	SGN-U424693
TT35_H17_x_at	-0.806188	SGN-U427131
DW003996_at	-0.8059592	SGN-U458983
C11144_s_at	-0.80471	SGN-U439755

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