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Expression Template: CK720588_at

Template Basic Information

Template name:	CK720588_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U425985
External db links:	GenBank: CK720588

Annotations for unigene SGN-U425985 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|1346736\|sp\|P49173\|NIP1_NICAL	330	1e-88	95.48	531 bp (37.2%)	-2
Description:	gi\|1346736\|sp\|P49173\|NIP1_NICAL Probable aquaporin NIP-type (Pollen-specific membrane integral &hellip
arabidopsis	blastx	At5G37820.1	259	2e-69	74.57	519 bp (36.3%)	-2
Description:	Symbols: NIP4;2, NLM5 \| NIP4;2/NLM5 (NOD26-LIKE INTRINSIC PROTEIN 4;2); water channel \| chr5:1&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
CK720588_at_probe_01	PM	data not available	data not available	1
CK720588_at_probe_02	PM	data not available	data not available	1
CK720588_at_probe_03	PM	data not available	data not available	1
CK720588_at_probe_04	PM	data not available	data not available	1
CK720588_at_probe_05	PM	data not available	data not available	1
CK720588_at_probe_06	PM	data not available	data not available	1
CK720588_at_probe_07	PM	data not available	data not available	1
CK720588_at_probe_08	PM	data not available	data not available	1
CK720588_at_probe_09	PM	data not available	data not available	1
CK720588_at_probe_10	PM	data not available	data not available	1
CK720588_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	0.49	0.28	0.57	1.17
	TobEA vegetative shoot apex	shoot apex	8	8	0.77	0.40	1.10	1.44
	TobEA closed bud	flower bud	5	5	6.63	6.46	0.38	0.06
	TobEA open bud	flower bud	5	5	9.25	8.92	0.92	0.10
	TobEA cotyledons	cotyledon	5	5	1.28	0.85	1.29	1.01
	TobEA flower	flower	5	5	10.17	10.13	0.36	0.04
	TobEA lower stem	stem internode	5	5	1.94	1.06	2.20	1.14
	TobEA upper stem	stem internode	5	5	1.58	1.61	1.21	0.76
	TobEA cauline leaf	cauline leaf	5	5	1.58	1.60	0.78	0.50
	TobEA early senescent leaf	adult vascular leaf	5	5	1.76	2.21	1.29	0.73
	TobEA late senescent leaf	adult vascular leaf	5	5	2.12	2.54	1.47	0.69
	TobEA mature leaf	adult vascular leaf	5	5	0.49	0.44	0.51	1.03
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	1.19	1.05	0.59	0.50
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	2.78	2.19	2.15	0.77
	TobEA young leaf	juvenile vascular leaf	5	5	0.93	0.70	0.76	0.82
	TobEA mature root	root	5	5	1.41	1.33	0.96	0.68
	TobEA young root	root	6	6	2.67	3.13	1.48	0.56
	TobEA seed	seed	6	6	1.54	1.25	1.48	0.96
	TobEA young shoot	shoot system	5	5	1.22	1.12	0.88	0.72

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 143.CEL		0.954	A
	Atlas 145.CEL	1.2878759	0.829	A
	Atlas 146.CEL	0.28375998	0.870	A
	Atlas 147.CEL	0.8692287	0.944	A
	Atlas 144.CEL		0.986	A
TobEA vegetative shoot apex	Atlas 248.CEL		0.829	A
	Atlas 249.CEL		0.998	A
	Atlas 58.CEL	0.9332852	0.870	A
	Atlas 61.CEL	3.206199	0.829	A
	Atlas 247.CEL	0.8074823	0.805	A
	Atlas 250.CEL		0.888	A
	Atlas 59.CEL		0.974	A
	Atlas 246.CEL	1.1756277	0.696	A
TobEA closed bud	Atlas 163.CEL	7.1291156	0.001	P
	Atlas 195.CEL	6.272717	0.008	P
	Atlas 161.CEL	6.331946	0.002	P
	Atlas 173.CEL	6.9431467	7e-4	P
	Atlas 199.CEL	6.4602237	0.002	P
TobEA open bud	Atlas 169.CEL	10.429017	2e-4	P
	Atlas 244.CEL	8.171929	2e-4	P
	Atlas 159.CEL	9.948287	2e-4	P
	Atlas 167.CEL	8.75614	2e-4	P
	Atlas 171.CEL	8.922951	2e-4	P
TobEA cotyledons	Atlas 69.CEL	0.84858	0.919	A
	Atlas 74.CEL	2.227856	0.805	A
	Atlas 70.CEL		0.976	A
	Atlas 71.CEL	3.0236125	0.944	A
	Atlas 75.CEL	0.3100139	0.981	A
TobEA flower	Atlas 166.CEL	10.131917	2e-4	P
	Atlas 197.CEL	9.828095	2e-4	P
	Atlas 165.CEL	10.630795	2e-4	P
	Atlas 198.CEL	10.449607	2e-4	P
	Atlas 158.CEL	9.830705	2e-4	P
TobEA lower stem	Atlas 174.CEL	4.6901355	0.304	A
	Atlas 200.CEL		0.992	A
	Atlas 164.CEL	3.8912942	0.130	A
	Atlas 172.CEL	1.0595878	0.888	A
	Atlas 245.CEL	0.05950802	0.805	A
TobEA upper stem	Atlas 162.CEL	0.7138155	0.754	A
	Atlas 170.CEL	2.7669086	0.593	A
	Atlas 168.CEL	1.6119148	0.781	A
	Atlas 160.CEL	0.061338887	0.970	A
	Atlas 196.CEL	2.7635818	0.534	A
TobEA cauline leaf	Atlas 231.CEL	1.5965034	0.500	A
	Atlas 233.CEL	1.5190909	0.696	A
	Atlas 237.CEL	2.3654583	0.666	A
	Atlas 229.CEL	2.0821993	0.568	A
	Atlas 235.CEL	0.32108527	0.774	A
TobEA early senescent leaf	Atlas 182.CEL		0.976	A
	Atlas 191.CEL	2.2072053	0.666	A
	Atlas 183.CEL	2.8688283	0.970	A
	Atlas 175.CEL	0.8258422	0.829	A
	Atlas 187.CEL	2.8785617	0.726	A
TobEA late senescent leaf	Atlas 178.CEL	1.3648436	0.754	A
	Atlas 186.CEL	3.7930436	0.500	A
	Atlas 194.CEL		0.805	A
	Atlas 179.CEL	2.8931916	0.726	A
	Atlas 190.CEL	2.5415518	0.696	A
TobEA mature leaf	Atlas 96.CEL	0.9193858	0.805	A
	Atlas 97.CEL		0.960	A
	Atlas 95.CEL		1.000	A
	Atlas 93.CEL	1.0953506	0.754	A
	Atlas 94.CEL	0.44245303	0.944	A
TobEA mid/early senescent leaf	Atlas 188.CEL	1.0468473	0.888	A
	Atlas 176.CEL	0.78115654	0.916	A
	Atlas 192.CEL	0.56491303	0.905	A
	Atlas 181.CEL	1.5377561	0.986	A
	Atlas 184.CEL	2.0201213	0.666	A
TobEA mid/late senescent leaf	Atlas 180.CEL	0.8154274	0.994	A
	Atlas 189.CEL	4.784359	0.500	A
	Atlas 177.CEL	2.1921396	0.805	A
	Atlas 185.CEL	5.3028626	0.432	A
	Atlas 193.CEL	0.8089157	0.805	A
TobEA young leaf	Atlas 53.CEL	1.6132057	0.905	A
	Atlas 56.CEL	1.8079795	0.829	A
	Atlas 54.CEL		0.954	A
	Atlas 55.CEL	0.52597034	0.870	A
	Atlas 57.CEL	0.6976815	0.870	A
TobEA mature root	Atlas 64.CEL	1.7172464	0.805	A
	Atlas 65.CEL	2.872505	0.754	A
	Atlas 67.CEL	0.7499208	0.829	A
	Atlas 63.CEL	0.39203712	0.944	A
	Atlas 66.CEL	1.3346082	0.850	A
TobEA young root	Atlas 39.CEL	3.0801036	0.601	A
	Atlas 44.CEL	3.1866214	0.666	A
	Atlas 41.CEL	4.348754	0.568	A
	Atlas 42.CEL	2.1383696	0.634	A
	Atlas 40.CEL		0.905	A
	Atlas 43.CEL	3.2466557	0.458	A
TobEA seed	Atlas 76.CEL	0.45256993	0.970	A
	Atlas 77.CEL	0.31478474	0.919	A
	Atlas 98.CEL	1.591568	0.805	A
	Atlas 78.CEL	1.3219638	0.962	A
	Atlas 99.CEL	4.3820624	0.466	A
	Atlas 79.CEL	1.1708893	0.726	A
TobEA young shoot	Atlas 89.CEL	0.11371864	0.976	A
	Atlas 86.CEL	2.5371275	0.634	A
	Atlas 87.CEL	0.93444973	0.941	A
	Atlas 90.CEL	1.3990053	0.919	A
	Atlas 88.CEL	1.1196421	0.870	A

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (16 templates correlated)

Template	Pearson	Internal Mapping
C9465_at	0.8573454	SGN-U443600
EB425504_s_at	0.8567549	SGN-U459942
C6307_x_at	0.8394053	SGN-U439940
C9489_at	0.8336466	No available
C6307_at	0.8324424	SGN-U439940
C6901_s_at	0.8254964	SGN-U443601
EB425199_at	0.8250597	SGN-U424621
EB425504_at	0.8197653	SGN-U459942
C9113_at	0.8186033	SGN-U446296
EB427127_at	0.8177182	SGN-U500073
C6725_at	0.8155067	SGN-U454041
C6172_at	0.8128275	SGN-U421712
EB426079_at	0.8116522	SGN-U431429
C6475_at	0.8108066	SGN-U442523
C6901_at	0.806055	SGN-U443601
C6273_at	0.8021039	SGN-U427077

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