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Expression Template: C8083_at

Template Basic Information

Template name:	C8083_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U450455
External db links:	data not available

Annotations for unigene SGN-U450455 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15226869\|ref\|NP_181042.1\|	142	4e-32	64.89	393 bp (34.7%)	1
Description:	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis thaliana] >gi3033392\|gb\|AAC&hellip
arabidopsis	blastx	At2G34970.1	142	3e-34	64.89	393 bp (34.7%)	1
Description:	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein \| chr2:14753419-14755611 FORWARD
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
C8083_at_probe_01	PM	data not available	data not available	1
C8083_at_probe_02	PM	data not available	data not available	1
C8083_at_probe_03	PM	data not available	data not available	1
C8083_at_probe_04	PM	data not available	data not available	1
C8083_at_probe_05	PM	data not available	data not available	1
C8083_at_probe_06	PM	data not available	data not available	1
C8083_at_probe_07	PM	data not available	data not available	1
C8083_at_probe_08	PM	data not available	data not available	1
C8083_at_probe_09	PM	data not available	data not available	1
C8083_at_probe_10	PM	data not available	data not available	1
C8083_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	8.65	8.61	0.17	0.02
	TobEA vegetative shoot apex	shoot apex	8	8	8.22	8.14	0.21	0.03
	TobEA closed bud	flower bud	5	5	8.37	8.30	0.14	0.02
	TobEA open bud	flower bud	5	5	8.23	8.28	0.17	0.02
	TobEA cotyledons	cotyledon	5	5	8.07	8.14	0.37	0.05
	TobEA flower	flower	5	5	8.15	8.15	0.08	0.01
	TobEA lower stem	stem internode	5	5	8.48	8.48	0.16	0.02
	TobEA upper stem	stem internode	5	5	8.23	8.25	0.17	0.02
	TobEA cauline leaf	cauline leaf	5	5	8.09	8.11	0.11	0.01
	TobEA early senescent leaf	adult vascular leaf	5	5	7.62	7.54	0.30	0.04
	TobEA late senescent leaf	adult vascular leaf	5	5	7.95	7.94	0.17	0.02
	TobEA mature leaf	adult vascular leaf	5	5	7.98	7.92	0.22	0.03
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	7.48	7.37	0.30	0.04
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	7.69	7.86	0.68	0.09
	TobEA young leaf	juvenile vascular leaf	5	5	8.37	8.37	0.06	0.01
	TobEA mature root	root	5	5	8.22	8.21	0.16	0.02
	TobEA young root	root	6	6	8.26	8.32	0.12	0.01
	TobEA seed	seed	6	6	9.56	9.58	0.13	0.01
	TobEA young shoot	shoot system	5	5	7.75	7.77	0.13	0.02

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 144.CEL	8.68351	2e-4	P
	Atlas 145.CEL	8.453788	2e-4	P
	Atlas 146.CEL	8.611945	2e-4	P
	Atlas 143.CEL	8.919698	2e-4	P
	Atlas 147.CEL	8.582194	2e-4	P
TobEA vegetative shoot apex	Atlas 250.CEL	8.117748	2e-4	P
	Atlas 246.CEL	8.438301	2e-4	P
	Atlas 247.CEL	8.487407	2e-4	P
	Atlas 248.CEL	8.123607	2e-4	P
	Atlas 59.CEL	8.051612	2e-4	P
	Atlas 61.CEL	8.153189	2e-4	P
	Atlas 249.CEL	8.459486	2e-4	P
	Atlas 58.CEL	7.9323187	2e-4	P
TobEA closed bud	Atlas 199.CEL	8.563261	2e-4	P
	Atlas 173.CEL	8.295668	2e-4	P
	Atlas 195.CEL	8.225916	2e-4	P
	Atlas 163.CEL	8.46948	2e-4	P
	Atlas 161.CEL	8.285066	2e-4	P
TobEA open bud	Atlas 244.CEL	7.969382	2e-4	P
	Atlas 169.CEL	8.392623	2e-4	P
	Atlas 159.CEL	8.351943	2e-4	P
	Atlas 167.CEL	8.281696	2e-4	P
	Atlas 171.CEL	8.163044	2e-4	P
TobEA cotyledons	Atlas 69.CEL	8.593797	7e-4	P
	Atlas 75.CEL	8.138013	7e-4	P
	Atlas 71.CEL	7.8604803	0.001	P
	Atlas 74.CEL	8.1452675	7e-4	P
	Atlas 70.CEL	7.606599	7e-4	P
TobEA flower	Atlas 158.CEL	8.148938	2e-4	P
	Atlas 166.CEL	8.12665	2e-4	P
	Atlas 197.CEL	8.029653	2e-4	P
	Atlas 198.CEL	8.250941	2e-4	P
	Atlas 165.CEL	8.186007	2e-4	P
TobEA lower stem	Atlas 200.CEL	8.615053	2e-4	P
	Atlas 172.CEL	8.469515	2e-4	P
	Atlas 164.CEL	8.223144	2e-4	P
	Atlas 245.CEL	8.598679	2e-4	P
	Atlas 174.CEL	8.477698	2e-4	P
TobEA upper stem	Atlas 162.CEL	8.011663	2e-4	P
	Atlas 168.CEL	8.250979	2e-4	P
	Atlas 196.CEL	8.427136	2e-4	P
	Atlas 160.CEL	8.351792	2e-4	P
	Atlas 170.CEL	8.099039	2e-4	P
TobEA cauline leaf	Atlas 231.CEL	8.19099	2e-4	P
	Atlas 229.CEL	8.1050205	2e-4	P
	Atlas 235.CEL	8.086426	2e-4	P
	Atlas 237.CEL	8.142166	2e-4	P
	Atlas 233.CEL	7.9067874	2e-4	P
TobEA early senescent leaf	Atlas 182.CEL	7.5448246	2e-4	P
	Atlas 187.CEL	7.397784	0.002	P
	Atlas 191.CEL	7.7821646	2e-4	P
	Atlas 175.CEL	7.3210125	2e-4	P
	Atlas 183.CEL	8.044321	0.001	P
TobEA late senescent leaf	Atlas 194.CEL	8.02101	2e-4	P
	Atlas 178.CEL	7.9442654	2e-4	P
	Atlas 186.CEL	7.7064333	0.002	P
	Atlas 190.CEL	8.181782	2e-4	P
	Atlas 179.CEL	7.8984613	0.002	P
TobEA mature leaf	Atlas 93.CEL	7.9164047	2e-4	P
	Atlas 96.CEL	8.323713	2e-4	P
	Atlas 94.CEL	8.03346	2e-4	P
	Atlas 95.CEL	7.745598	2e-4	P
	Atlas 97.CEL	7.857489	2e-4	P
TobEA mid/early senescent leaf	Atlas 184.CEL	7.3370566	2e-4	P
	Atlas 192.CEL	7.3746257	2e-4	P
	Atlas 181.CEL	7.829436	2e-4	P
	Atlas 188.CEL	7.7410274	7e-4	P
	Atlas 176.CEL	7.1119804	2e-4	P
TobEA mid/late senescent leaf	Atlas 180.CEL	7.856683	2e-4	P
	Atlas 189.CEL	8.557376	0.004	P
	Atlas 177.CEL	6.811851	2e-4	P
	Atlas 185.CEL	7.9779716	0.002	P
	Atlas 193.CEL	7.233298	2e-4	P
TobEA young leaf	Atlas 53.CEL	8.291646	2e-4	P
	Atlas 57.CEL	8.351833	2e-4	P
	Atlas 55.CEL	8.397061	2e-4	P
	Atlas 56.CEL	8.453863	2e-4	P
	Atlas 54.CEL	8.369737	2e-4	P
TobEA mature root	Atlas 64.CEL	8.183972	2e-4	P
	Atlas 63.CEL	8.212334	2e-4	P
	Atlas 66.CEL	8.284281	2e-4	P
	Atlas 67.CEL	7.991321	2e-4	P
	Atlas 65.CEL	8.437097	2e-4	P
TobEA young root	Atlas 41.CEL	8.320223	2e-4	P
	Atlas 39.CEL	8.100813	2e-4	P
	Atlas 40.CEL	8.125719	2e-4	P
	Atlas 43.CEL	8.334598	2e-4	P
	Atlas 44.CEL	8.385921	2e-4	P
	Atlas 42.CEL	8.313871	2e-4	P
TobEA seed	Atlas 78.CEL	9.642172	2e-4	P
	Atlas 79.CEL	9.672336	2e-4	P
	Atlas 99.CEL	9.519247	2e-4	P
	Atlas 77.CEL	9.693232	2e-4	P
	Atlas 98.CEL	9.46635	2e-4	P
	Atlas 76.CEL	9.366094	2e-4	P
TobEA young shoot	Atlas 87.CEL	7.532067	0.001	P
	Atlas 88.CEL	7.749545	2e-4	P
	Atlas 89.CEL	7.896154	2e-4	P
	Atlas 86.CEL	7.771978	0.001	P
	Atlas 90.CEL	7.787748	2e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (85 templates correlated)

Template	Pearson	Internal Mapping
BP525841_s_at	0.8854872	SGN-U434575
C867_at	0.8770947	SGN-U432041
C2064_at	0.866397	SGN-U448569
EB429415_at	0.8644036	SGN-U434004
C3991_at	0.8642334	SGN-U423072
EB679666_s_at	0.8635097	SGN-U425016
C9490_s_at	0.8619036	SGN-U430258
C2986_s_at	0.8603048	SGN-U430142
EB679750_at	0.8598373	SGN-U447286
C7075_at	0.8586584	SGN-U444080
C50_at	0.8570884	SGN-U451103
EB681743_s_at	0.8567417	SGN-U434719
C611_at	0.8566595	SGN-U442873
BP535339_at	0.8547327	SGN-U447815
C306_at	0.8535705	SGN-U430335
EB683056_x_at	0.8531747	SGN-U459618
BP133081_s_at	0.849605	SGN-U434004
C11298_at	0.8493868	SGN-U437273
C3211_at	0.8491995	SGN-U424016
C4082_s_at	0.846332	No available
BP534606_s_at	0.8458162	SGN-U442174
C9124_x_at	0.843416	SGN-U440790
C2800_at	0.8429236	SGN-U469694
C4936_at	0.8428935	SGN-U459118
EB445936_at	0.8424431	SGN-U437394
DV158853_at	0.841539	SGN-U499352
C10533_at	0.8393096	No available
BP534075_s_at	0.8389695	SGN-U443411
C9490_at	0.8383737	SGN-U430258
EB438278_at	0.8376429	No available
C1212_at	0.8356314	SGN-U424912
DW004153_at	0.8333376	SGN-U442868
C3918_at	0.8320883	SGN-U442174
DV159082_at	0.8309467	SGN-U451616
TT22_M13_at	0.8296599	SGN-U434575
EB681861_at	0.8270654	SGN-U464429
DV158482_at	0.8262053	SGN-U449710
BP532369_at	0.825777	SGN-U498293
EB446946_at	0.8246316	SGN-U426404
C3788_at	0.8242498	SGN-U436464
C3894_at	0.8238099	SGN-U422378
C3247_at	0.823124	SGN-U428125
C2096_s_at	0.8210344	SGN-U435374
BP533036_at	0.8198643	SGN-U432051
BP527241_at	0.8195985	SGN-U442758
C8525_at	0.8195333	SGN-U422697
L38828_at	0.8190783	SGN-U469051
C4064_at	0.8190553	SGN-U433976
C11601_at	0.8188206	SGN-U435410
C989_at	0.8186634	SGN-U422862
C383_at	0.8173556	SGN-U444917
C6830_at	0.8172834	SGN-U421444
TT38_F24_at	0.8162782	SGN-U449541
DV162145_at	0.815938	SGN-U482684
C8329_at	0.8156404	SGN-U442487
EB451374_at	0.8151967	SGN-U425157
TT25_J05_s_at	0.8148462	SGN-U428586
C1289_at	0.8148383	SGN-U436789
BP137240_s_at	0.8141328	SGN-U426013
C1545_at	0.8136003	SGN-U431446
C4719_at	0.8132856	SGN-U424913
C8102_at	0.8132263	SGN-U448999
C844_at	0.812751	SGN-U430257
C3286_s_at	0.8122703	SGN-U436785
C1970_s_at	0.812266	SGN-U422786
C1970_s_at	0.812266	SGN-U444392
C1970_s_at	0.812266	SGN-U445423
BP530590_at	0.8116387	SGN-U438921
EB677990_s_at	0.8108852	SGN-U451723
BP534075_at	0.8096612	SGN-U443411
C265_at	0.8071967	SGN-U435759
BP533375_at	0.806943	SGN-U443349
DV158198_s_at	0.8063473	SGN-U425982
C7739_at	0.8062984	SGN-U429302
DV161151_at	0.8057057	SGN-U439706
C4418_at	0.8056726	SGN-U440464
C11468_at	0.8055558	No available
EB434811_at	0.8055332	SGN-U451613
C4064_x_at	0.8050948	SGN-U433976
BP531191_at	0.8046383	SGN-U480049
BP531211_at	0.8038179	SGN-U432746
EB678059_at	0.8033244	SGN-U465926
C3286_at	0.8031743	SGN-U436785
C915_at	0.8022661	SGN-U433734
C9124_at	0.8019867	SGN-U440790
C4916_at	0.801068	SGN-U440723
C9921_at	0.8002042	SGN-U449312

Correlation Type:

Negative correlations (15 templates correlated)

Template	Pearson	Internal Mapping
C6603_at	-0.848245	SGN-U425913
C6603_x_at	-0.847193	SGN-U425913
C242_at	-0.825149	SGN-U428470
C1748_at	-0.8194477	SGN-U433217
TT09_L11_at	-0.8134153	SGN-U422589
TT13_N23_at	-0.8127479	SGN-U443745
DV999672_at	-0.8111292	SGN-U438036
TT36_B24_at	-0.8108823	SGN-U450171
C3891_at	-0.8068321	SGN-U443247
C1541_at	-0.8064546	SGN-U424324
DV999564_at	-0.8054268	SGN-U438852
EB643507_x_at	-0.8035246	SGN-U437124
C1930_s_at	-0.8031374	SGN-U449214
EB433346_at	-0.8025833	SGN-U448224
CV020771_x_at	-0.8002931	SGN-U444724

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